BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31390.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 791 0.0
Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598 769 0.0
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 172 3e-42
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 145 6e-34
Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 110 2e-23
Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 95.3 6e-19
Ahg938811 jgi|Araly1|938811|scaffold_503002.1 93.5 2e-18
Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 93.5 2e-18
Ahg937123 jgi|Araly1|937123|scaffold_501314.1 89.8 3e-17
Ahg924373 jgi|Araly1|924373|scaffold_105654.1 86.1 4e-16
Ahg930958 jgi|Araly1|930958|scaffold_303415.1 76.8 2e-13
Ahg937127 jgi|Araly1|937127|scaffold_501318.1 63.9 2e-09
Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 60.2 2e-08
> Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133
Length=849
Score = 791 bits (428), Expect = 0.0
Identities = 673/790 (85%), Gaps = 22/790 (3%)
Strand=Plus/Plus
Query 10 CAATATGAAAAGAAGATAACATGGACGATTAAGAATTTCTCC-TTTGTGCAATCTCAA-G 67
||||||||||||||||||||||||||||| |||||||||||| || |||||||| || |
Sbjct 10 CAATATGAAAAGAAGATAACATGGACGATCAAGAATTTCTCCACTT-TGCAATCT-AATG 67
Query 68 CAA-TTGATTCTGATATTTTCGTAGTTGGTGACTCCAAATGGCATCTTGTGGCCTATCCC 126
|| || |||| |||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 68 -AATTTTATTCCGATAATTTCGTAGTTGGTGACTCCAAATGGCGTCTTCTGGCCTATCCC 126
Query 127 AAGGGAAATGGTGAAAGTACTAATAAATGTTTGTCACTGTATCTGAATGTTGCGGATTTC 186
||||||||||| || || ||||||| |||| || |||| |||| |||||| || |||
Sbjct 127 AAGGGAAATGGAGATGGTTTTAATAAAAGTTTTTCTCTGTTTCTGGCTGTTGCTGA-TTC 185
Query 187 -CAATCTTTGCCTAATGGTTGGAAAAGACACATCAAATATCG-CTTAACTGTTGTTAATC 244
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 186 TGAATCTTTGCCTAATGGTTGGAAAAGACACATCAAATATCGTCT-AACTGTTGTTAATC 244
Query 245 AAATGTCGGAGAAACTTTCCGAACAGGAAGTAAT-ACAAGGCTGGTTTTATAAAAACTT- 302
||||||||||||||||||| ||||||||| ||| |||| ||||||| || | || ||
Sbjct 245 AAATGTCGGAGAAACTTTCTAAACAGGAAG-AATTACAATCCTGGTTTGATCAGAA-TTC 302
Query 303 TCATATCTCTGGTTTCCAAACAATGCTTCCCCTTTCCAAACTTCTTGACAAAAATGGTGG 362
|| || || || | || | |||||||||||||| |||||||| ||||| |||||| |||
Sbjct 303 TCTTAGCTGGGGCTACCCAGCAATGCTTCCCCTTACCAAACTTGTTGACGAAAATGATGG 362
Query 363 GTTTCTGGTGAATGGTGATGTCAAGATTGTTGTCGAGGTAGGTGTTCTTGAAGTCGTTGG 422
||||||||||||||| || |||||| |||||| |||||| |||||||||||||| |||||
Sbjct 363 GTTTCTGGTGAATGGAGAAGTCAAGGTTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTTGG 422
Query 423 CAAATCAGATGTGTTAGAGGAAACTTTATTAGTTCATGAAAGCATCGATATCAATGGGTT 482
||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||
Sbjct 423 CAAATCAGATGTGTTAGTGGAAACTTTATTAGTTCAGGAAAGCATCGATGTCAATGGGTT 482
Query 483 TCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTTGAGAAGCACCCAGACAT 542
||||||||||||||| |||||||| |||||||||||||||||| | || ||||||||||
Sbjct 483 TCAAGTTCTTCCTTCTCAGGTAGACTCTGTGAACAATCTCTTTAAAAATTACCCAGACAT 542
Query 543 CGTATCAGAATT-TCGT-TCCAAGAACCCACTTATGAGAACAACATACTTGAAT-GACCT 599
| |||| |||| | || | | ||||| |||| ||||| |||||||| ||||| | |||
Sbjct 543 TGCATCAAAATTCT-GTCTGGA-GAACCAACTTCTGAGAGCAACATACATGAATAG-CCT 599
Query 600 ACTATGTTTGACTGAGATCCTGTGCGAGTCCTCTGAGGAACTCTCCACTGGTGATATGGC 659
|||||| ||||||||||| ||| || ||||| ||||| ||||||| | || |||| | ||
Sbjct 600 ACTATGCTTGACTGAGATTCTGAGCCAGTCCCCTGAGAAACTCTCTAGTGTTGATCTCGC 659
Query 660 TAACGCGTATTCTACACTAACTTGTTTGAAAAAAGCGGGGTTTAAGTTGGATTGGCTGGA 719
|| || ||| ||||||| ||| | ||| |||||| || ||||||||||||||| ||||
Sbjct 660 CAATGCACATTGTACACTATCTTCTCTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGA 719
Query 720 GAAGAAACTGAAAGAGGTTTGTGAGGCTCGGGTGCAAGAAATTGATG-AAGAGTGGAAGG 778
|||||||||||||||| || |||| ||||||||||| || |||| | |||| | |||||
Sbjct 720 GAAGAAACTGAAAGAGCTTCGTGATACTCGGGTGCAACAACTTGA-GCAAGATTTGAAGG 778
Query 779 ACTTGACGGA 788
|||||| |||
Sbjct 779 ACTTGAAGGA 788
> Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598
Length=828
Score = 769 bits (416), Expect = 0.0
Identities = 675/797 (85%), Gaps = 29/797 (4%)
Strand=Plus/Plus
Query 1 ATGGAAGATCAATATGAAAAGAAGATAACATGGACGATTAAGAATTTCTCCT-TTGTGCA 59
||||| || |||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1 ATGGAGGAGCAATATGAAAAGAAGATAACCTGGACGATTAAGAATTTCTCCTCTT-TGCC 59
Query 60 ATCTCA-AGCAA-TTGATTCTGATATTTTCGTAGTTGGTGACTCCAAATGGCATCTTGTG 117
|||| | | || ||| |||||||| ||||||||||||||| |||||||||| |||||||
Sbjct 60 ATCTGATA-AAATTTG-TTCTGATAATTTCGTAGTTGGTGATTCCAAATGGCGTCTTGTG 117
Query 118 GCCTATCCCAAGGGAAATGGTGAAAGTAC-TAATAAATGTTTGTCACTGTATCTGAATGT 176
||||||||||||||| |||| || ||| | ||||||| ||||||| |||| |||| |||
Sbjct 118 GCCTATCCCAAGGGACATGGGGATAGT-CTTAATAAAAGTTTGTCTCTGTTTCTGGCTGT 176
Query 177 TGCGGATTTC-CAATCTTTGCCTAATGGTTGGAAAAGACACATCAAA-TATCGCTTAACT 234
||| || ||| ||||||||||| |||||||||||||| ||| |||| |||||| ||||
Sbjct 177 TGCTGA-TTCTGAATCTTTGCCTTATGGTTGGAAAAGAGACA-CAAAGTATCGCCAAACT 234
Query 235 GTTGTTAATCAAA-TGTCGGAGAAACTTTCCGAACAGGAAGTAATACAAGGCTGGTTTTA 293
||||||||||||| | ||||||||||| ||| ||||| ||| | | || ||||||| |
Sbjct 235 GTTGTTAATCAAACT-TCGGAGAAACTCTCCCAACAGAAAG-GA-A-AACCCTGGTTTAA 290
Query 294 TAAAAACTT-TCAT-ATCTCTGGTTTCCAAACAATGCTTCCCCTTTCCAAACTTCTTGAC 351
| | || || | | | || ||||||||| ||||| |||||||| || |||||||||||
Sbjct 291 TCAGAA-TTGT-GTCAGCTGGGGTTTCCAATCAATGGTTCCCCTTACCGAACTTCTTGAC 348
Query 352 AAAAATGGTGGGTTTCTGGTGAATGGTGATGTCAAGATTGTTGTCGAGGTAGGTGTTCTT 411
| |||||||||||||||||||||||| || |||||||||||| |||||| |||||||||
Sbjct 349 ATAAATGGTGGGTTTCTGGTGAATGGAGAAATCAAGATTGTTGCCGAGGTTGGTGTTCTT 408
Query 412 GAAGTCGTTGGCAAATCAGATGTGTTAGAGGAAACTTTATTAGTTCATGAAAGCATCGAT 471
||||| |||||||| |||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 409 GAAGTTGTTGGCAAGTCAGATGTGTTAGAGGAAACTTCATTAGTAAATGAAAGCATCGAT 468
Query 472 ATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTTGAGAA- 530
||||||||||||||||||||||||||||||||||||||||||| | ||| ||| | ||
Sbjct 469 GTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGAGTCTTTTT-ATAAA 527
Query 531 GCACCCAGACATCGTATCAGAATTTCGTTCCAA-GAACCCACTTATGAGAACAACATACT 589
|||||||||||| | |||| |||| ||| |||| |||||||| |||||||| ||||||
Sbjct 528 GCACCCAGACATTGCATCACAATTCCGT-CCAAAGAACCCACACCTGAGAACAGCATACT 586
Query 590 TGAATGACC-TACTATGTTTGACTGAGA-TCCTGTGCGAGTCCTCTGAGGAACTCTCCAC 647
||||| | | ||||| | ||| | |||| || ||||| | ||| | |||||||||||||
Sbjct 587 TGAAT-AGCATACTAAGCTTGTCAGAGAGTC-TGTGCCAATCCCCCGAGGAACTCTCCAA 644
Query 648 TGGTGATATGGCTAACGCGTATTCTACACTAACTTGTTTGAAAAAAGCGGGGTTTAAGTT 707
|| |||| ||||||| || || | ||||||||||||| ||| ||||||||||||||| ||
Sbjct 645 TGCTGATCTGGCTAATGCATACTGTACACTAACTTGTGTGACAAAAGCGGGGTTTAAATT 704
Query 708 GGATTGGCTGGAGAAGAAACTGAAAGAGGTTTGTGAGGCTCGGGTGCAAGAAATTGATGA 767
||||||| |||| ||||||||||||||| || ||||||||||| ||||||| ||||| ||
Sbjct 705 GGATTGGTTGGAAAAGAAACTGAAAGAGATTGGTGAGGCTCGGCTGCAAGAGATTGAGGA 764
Query 768 AGAGTGGAAGGACTTGA 784
||| | ||||||| |||
Sbjct 765 AGAATTGAAGGACATGA 781
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 172 bits (93), Expect = 3e-42
Identities = 501/688 (73%), Gaps = 67/688 (10%)
Strand=Plus/Plus
Query 70 ATTGATTCTGATATTTTCGTAGTTGGTGACTCCAAATGGCATCTTGTGG-CCTATCCCAA 128
||| ||||||||| ||||| || | || || ||||||||||||| || |||||||||
Sbjct 70 ATTTATTCTGATAAATTCGTTGTCGATGGCTGCAAATGGCATCTT-CGGTTCTATCCCAA 128
Query 129 GGGAAATGGTGAAAGTACTAATAAATGTTTGTCACTGTATCTGA-ATGTTGCGGAT-TTC 186
|||| || | ||| ||||| |||||||| |||||||| | ||||| ||||| ||
Sbjct 129 GGGATATAAT--AAG-GCTAAT---TGTTTGTCTCTGTATCT-ACATGTTCCGGATATT- 180
Query 187 CAATCTTTGCCTAATGGTTGGAAAAGACACATC-AAA-TATCGCTTAACTGTT-GTTAAT 243
|||||||||||| ||| |||| || |||| | ||| | || | |||| || || |||
Sbjct 181 GAATCTTTGCCTATTGGATGGAGAATACAC-GCTAAATTTTCTC-TAAC-ATTAGTAAAT 237
Query 244 CAA-ATGTC-GGAGAAACTTTCCGAACAGGAAGTA-ATAC-AAG-GCTGGTTTTATAAAA 298
||| || || ||| ||||| ||| || | ||| | | || || ||||||| || | |
Sbjct 238 CAATAT-TCAGGA-AAACTCTCC-AA-AATAAG-AGAGACTCAGCACTGGTTTGATCAGA 292
Query 299 ACTTTCATATCT-CTGGTTTCCAA-ACAATGCTTCCCCTTTCCAAACTTCTTGACAAAAA 356
| || || || ||||| ||| | |||| || |||| | |||||| || | |||
Sbjct 293 AGGCTCCTAACTGGGGGTTT-CAAGA-AATGATTACCCTCACTGAACTTCATG-C-CAAA 348
Query 357 TGGTGGG-TTTCTGGTGAATGGTGATGTCA-AGATTGTTGTCGAGGTAGGTGTTCTTGAA 414
| ||| || |||||||||| || ||| | ||||||| | || ||| ||||||||||
Sbjct 349 --GCGGGATTGGTGGTGAATGGAGAACTCACA-ATTGTTGCCAAGATAGATGTTCTTGAA 405
Query 415 GTCGTTGGCAAATCAGATGTG-TTAGAGGAAACTTTATTAGTTCA-T-GAAAGC-ATCGA 470
|| || || |||| ||||| | | ||||||| ||| || || | | | |||| | | ||
Sbjct 406 GTTGTAGGAAAATTAGATG-GCTCAGAGGAATCTTCATCAG-T-AGTGGAAA-CGGTAGA 461
Query 471 TATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTTGAGA 529
| ||||||| ||||||||||||||||||||||||||||| ||||| | | | ||||| |
Sbjct 462 TGTCAATGGCTTTCAAGTTCTTCCTTCACAGGTAGAATCAGTGAAGCTTT-TGTTTGA-A 519
Query 530 AG-CACCCAGACATCGTATCAGAATTTCGTTCCAAG-AACCCACT-TATGA-GAACAACA 585
|| |||| ||| | | |||| |||||||| | || || ||| | ||||| || | ||
Sbjct 520 AGTCACCAAGATTTTGCATCAAAATTTCGT-CTAAATAATCCA-TATATGAAGA-CGGCA 576
Query 586 TACTTGAATGACCTACTATGT--TTGACTGAGATC-CTGTGC-GAGTC-CTCTGAGGAAC 640
||| |||||| || || || || || | | | || ||| || || | || | ||||
Sbjct 577 TACATGAATGTTCT-CT-TGAGCTTAACCCAAA-CGCTATGCCGA-TCGC-CTCAAGAAC 631
Query 641 TCTCCACTGGTGATATGGCTAACGCGTATTCTACACTAACTTGTTTGAAAAAAGCGGGGT 700
|||||| || || | | | | ||| || |||| | | ||||| | |||| ||||
Sbjct 632 TCTCCAATGATGGTCTCTTTGATGCGGGCGCTGCACTGTCATATTTGAGAGAAGCAGGGT 691
Query 701 TTAAGTTGGATTGGCTGGAGAAGAAACT 728
|||||||||||||| |||||||||||||
Sbjct 692 TTAAGTTGGATTGGTTGGAGAAGAAACT 719
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 145 bits (78), Expect = 6e-34
Identities = 165/205 (80%), Gaps = 13/205 (6%)
Strand=Plus/Plus
Query 361 GGG-TTTCTGGTGAATGGTGATGTC-AAGATTGTTGTCGAGGTAGGTGTTCTTGAAGTCG 418
||| |||||||||||||| || || ||| |||||| | || ||| |||||||||||| |
Sbjct 333 GGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGCCAAGATAGATGTTCTTGAAGTTG 391
Query 419 TTGGCAAATCAGATGTGTT-AGAGGAAACTTTATTAGTTCA-T-GAAAGCATCGATATCA 475
| || |||| |||||| || | ||||| | |||| || | | | |||| | | ||| |||
Sbjct 392 TAGGAAAATTAGATGT-TTCACAGGAATCGTTATCAG-T-AGTGGAAACCGTAGATGTCA 448
Query 476 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTTGAGAAGCAC 534
|||||||||||||||||||||||||||||||||||||||| | | | ||||| || |||
Sbjct 449 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTT-TGTTTGAAAAACAC 507
Query 535 CCAGACATCGTATCAGAA-TTTCGT 558
| ||| || |||||| || ||||||
Sbjct 508 CAAGATATTGTATCA-AAGTTTCGT 531
> Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1
Length=927
Score = 110 bits (59), Expect = 2e-23
Identities = 246/331 (74%), Gaps = 34/331 (10%)
Strand=Plus/Plus
Query 188 AATCTTTGCCTAATGGTTGGAAAAGACACATC-AAA-TATCGCTTAACTGTT-GTTAATC 244
||||||| |||| ||| |||| ||||||| | ||| | || || ||| || || ||||
Sbjct 173 AATCTTTCCCTATTGGATGGAGAAGACAC-GCAAAATTTTC-TTTTACT-TTAGTAAATC 229
Query 245 AAATGTCGGAGAAA-CTTTCCGA-AC--AGGA-AGTAAT-ACAAGGCTGGTTTTATAAAA 298
||| || || ||| || ||| | || || | || ||| |||| ||||||| || | |
Sbjct 230 AAAAATCAGA-AAATCTCTCC-ATACTAAGAACAG-AATCACAACACTGGTTTGATCAGA 286
Query 299 ACT-TTCATATCT-CTGGTTTCCAA-ACAATGCTTCCCCTTTCCAAACTTCTTGA-CAAA 354
| | | | || || ||||| ||| || ||| ||||||| || |||||| | | ||||
Sbjct 287 AGTCTAC-TAGCTGGGGGTTT-CAAGAC-ATGATTCCCCTCTCTGAACTTCAT-ACCAAA 342
Query 355 AATGGTGGGTTTCTGGTGAATGGTGATGTCA-AGATTGTTGTCGAGG-TAGGTGTTCTTG 412
| | || |||||||||||||| || ||| | |||||| | ||| ||| ||||||||
Sbjct 343 GA--G-GGATTTCTGGTGAATGGAGAACTCATTG-TTGTTG-CCAGGATAGATGTTCTTG 397
Query 413 AAGTCGTTGGCAAATCAGATGTGTT-AGAGGAAACTTTATTAGTTCAT-GAAAGCATCGA 470
|||| || || |||| |||||| || | ||| | ||| || ||| | | |||| | | ||
Sbjct 398 AAGTTGTAGGAAAATTAGATGT-TTCACAGGTATCTTCATCAGTAC-TGGAAACCGTAGA 455
Query 471 TATCAATGGGTTTCAAGTTCTTCCTTCACAG 501
| |||||||||||||||||||||||||||||
Sbjct 456 TGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
> Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854
Length=1308
Score = 95.3 bits (51), Expect = 6e-19
Identities = 208/281 (74%), Gaps = 22/281 (8%)
Strand=Plus/Plus
Query 460 GAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA-TCTGTGAACAA 518
|||| ||| ||||||||||||||||||||||||||||||||||| ||| | ||||| |
Sbjct 862 GAAACCATGGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GAAATTTGTGAGCCG 920
Query 519 TCTCTTTGAGAAGCACCCAGACATCGTA-TCAGAATTTCGTTCCAAGAACCCACTTATGA 577
| | ||||| || |||||||||| | | | || ||| | | | ||||||| || | | |
Sbjct 921 TATTTTTGAAAAATACCCAGACATTGCAGT-AGGATTCCATGCAAAGAACCAACATCTTA 979
Query 578 -GAACAACATACTTGAATGACCTACT-ATGTTTGA-CTGAGATC-CTGTG-CGAGTC-CT 631
|| || ||| | |||||| ||| || | | | | | |||| | ||||| | |||| |
Sbjct 980 AGA-CAGCATGCATGAATGTCCTCCTCA-GCCTAATC-GAGA-CACTGTGTC-AGTCAC- 1033
Query 632 CTGAGGAACTCTCCACTGGTGATATGGCT--AACGC-GTATTCTACACTAACTTGTTTGA 688
|| |||| ||||| | || ||||||| | || || | | | | ||||| | | |||
Sbjct 1034 CTCAGGAGCTCTCAAATGAAGATATGG-TGGAA-GCAG-ACAATGCTCTAACATATGTGA 1090
Query 689 AAAAAGCGGGGTTTAAGTTGGATTGGCTGGAGAAGAAACTG 729
|| | ||||| |||||| |||||||| |||||| ||| |||
Sbjct 1091 AAGATGCGGGCTTTAAGGTGGATTGGTTGGAGATGAAGCTG 1131
> Ahg938811 jgi|Araly1|938811|scaffold_503002.1
Length=1099
Score = 93.5 bits (50), Expect = 2e-18
Identities = 105/132 (80%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 469 GATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTTGAG 528
||| ||||||||||||||||||||||||||||||| | | ||||| | | | |||||
Sbjct 651 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGAGCCGTATTTTTGAA 710
Query 529 AAGCACCCAGACA-TCGTATCAGAATTTCGTTCCAAGAACCCACTTATGAGAACAACATA 587
|| |||||||| | | | |||||||| ||| | ||||||| | | |||||||| ||||
Sbjct 711 AAACACCCAGAGACT-GCATCAGAATGCCGTACAAAGAACCAAGATCTGAGAACATCATA 769
Query 588 CTTGAATGACCT 599
| |||||| |||
Sbjct 770 CATGAATGTCCT 781
> Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754
Length=918
Score = 93.5 bits (50), Expect = 2e-18
Identities = 70/80 (88%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 460 GAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAAT 519
|||||||| | | | |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 493 GAAAGCATTGTTGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGCCGT 552
Query 520 CTCTTTGAGAAGCACCCAGA 539
| ||||| |||||||||||
Sbjct 553 ATTTTTGAAAAGCACCCAGA 572
> Ahg937123 jgi|Araly1|937123|scaffold_501314.1
Length=1048
Score = 89.8 bits (48), Expect = 3e-17
Identities = 102/127 (80%), Gaps = 8/127 (6%)
Strand=Plus/Plus
Query 460 GAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAA 518
|||||||| ||| |||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 531 GAAAGCATTGATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAAACG- 589
Query 519 TCTCTTTGAGAAG-CACCCAGACATCGTATCAGAATTTCGT-TCCAA-GAACCCACTTAT 575
| | || || ||| ||||||||||| | || ||| ||||| | || ||||| || |||
Sbjct 590 TATATTCGA-AAGACACCCAGACATGGCATTAGAGTTTCGAGT--AATGAACCAACATAT 646
Query 576 GAGAACA 582
||| |||
Sbjct 647 GAGGACA 653
> Ahg924373 jgi|Araly1|924373|scaffold_105654.1
Length=1003
Score = 86.1 bits (46), Expect = 4e-16
Identities = 105/132 (80%), Gaps = 9/132 (7%)
Strand=Plus/Plus
Query 440 AGGAAACTTTATTAGTTCATGAAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCAC 499
||||| ||| || ||| | |||||||| | | | |||||||||||||||||||||||||
Sbjct 538 AGGAAGCTTCATCAGTAAAAGAAAGCAT-GGT-T-AATGGGTTTCAAGTTCTTCCTTCAC 594
Query 500 AGGTAGAATCTGTGA-ACAATCTCTTTGAGAAG-CACCCAGACATCGTA-TCAGAATTTC 556
||| ||||||||||| || | | ||||| ||| || |||||||| || | ||| || |
Sbjct 595 AGGAAGAATCTGTGAGACG-TATATTTGA-AAGACATCCAGACATTGTGGT-AGACTTCC 651
Query 557 GTTCCAAGAACC 568
|| | |||||||
Sbjct 652 GTGCAAAGAACC 663
> Ahg930958 jgi|Araly1|930958|scaffold_303415.1
Length=959
Score = 76.8 bits (41), Expect = 2e-13
Identities = 64/75 (85%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 469 GATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTTGA 527
||| |||||||||||||||||||||||||||||| ||||||||||| | | | || ||
Sbjct 418 GATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACG-TATATTCGA 476
Query 528 GAAGCACCCAGACAT 542
|| |||||||||||
Sbjct 477 AAAACACCCAGACAT 491
> Ahg937127 jgi|Araly1|937127|scaffold_501318.1
Length=586
Score = 63.9 bits (34), Expect = 2e-09
Identities = 43/47 (91%), Gaps = 1/47 (2%)
Strand=Plus/Plus
Query 461 AAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 507
||| ||| ||| ||||||||||||||||||||||||||||| |||||
Sbjct 523 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
> Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220
Length=1629
Score = 60.2 bits (32), Expect = 2e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 461 AAAGCATCGATATCAATGGGTTTCAAGTTCTTCCTTCACAG 501
||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1214 AAACCATGGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5