BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31400.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133 809 0.0
Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598 676 0.0
Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996 139 3e-32
Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994 121 1e-26
Ahg930958 jgi|Araly1|930958|scaffold_303415.1 91.6 8e-18
Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754 86.1 4e-16
Ahg898777 jgi|Araly1|898777|Al_scaffold_0005_2743 82.4 5e-15
Ahg937123 jgi|Araly1|937123|scaffold_501314.1 78.7 6e-14
Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1 76.8 2e-13
Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854 76.8 2e-13
Ahg924373 jgi|Araly1|924373|scaffold_105654.1 75.0 8e-13
Ahg938811 jgi|Araly1|938811|scaffold_503002.1 71.3 1e-11
Ahg937127 jgi|Araly1|937127|scaffold_501318.1 63.9 2e-09
Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220 60.2 2e-08
> Ahg336568 jgi|Araly1|336568|fgenesh1_pg.C_scaffold_1003133
Length=849
Score = 809 bits (438), Expect = 0.0
Identities = 716/846 (85%), Gaps = 35/846 (4%)
Strand=Plus/Plus
Query 10 CAATATGAAAAGAGGATAACATGGACGATTAAGAATTTCTCCTCTTTGCAATCTCATGCA 69
||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||| |
Sbjct 10 CAATATGAAAAGAAGATAACATGGACGATCAAGAATTTCTCCACTTTGCAATCTAATG-A 68
Query 70 A-TTTATTTTGATATTTTTGTAGTTGGGGACACCAAATGGCATCTTCTGGCCTATCCCAA 128
| |||||| |||| ||| |||||||| ||| ||||||||| ||||||||||||||||||
Sbjct 69 ATTTTATTCCGATAATTTCGTAGTTGGTGACTCCAAATGGCGTCTTCTGGCCTATCCCAA 128
Query 129 GGGATATGGTGATAGCATTAATAAATGTTTGTCTCTGTTTCTTGG-TGTTCCTGATCCTG 187
|||| |||| ||| | |||||||| |||| |||||||||| ||| |||| ||||| |||
Sbjct 129 GGGAAATGGAGATGGTTTTAATAAAAGTTTTTCTCTGTTTC-TGGCTGTTGCTGATTCTG 187
Query 188 -ATGATTTGCCTTCTGGTTGGAAAAGACACATCATATATCGTCTTACTGTTGTTAATCAA 246
|| ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 188 AAT-CTTTGCCTAATGGTTGGAAAAGACACATCAAATATCGTCTAACTGTTGTTAATCAA 246
Query 247 ATGTCGGAGAAACTCTCCAAACAGGAAGTAGCACGGGGCGGGTTTTACCCGAGGTCTCTT 306
|||||||||||||| || |||||||||| | || | ||||| | | || ||||||
Sbjct 247 ATGTCGGAGAAACTTTCTAAACAGGAAGAATTACAATCCTGGTTTGATCAGAATTCTCTT 306
Query 307 ACCTTCGG-TTCCCAAGTAATGCTTCCACTTA-CAGAAC-T-TT-------ATGGTGGGT 355
| || || | ||| || ||||||||| |||| || ||| | || ||| |||||
Sbjct 307 AGCTGGGGCTACCC-AGCAATGCTTCCCCTTACCA-AACTTGTTGACGAAAATGATGGGT 364
Query 356 TTTTGGTTAGTGGCCAAGTCAAGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTTGGCA 415
|| |||| | ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 365 TTCTGGTGAATGGAGAAGTCAAGGTTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTTGGCA 424
Query 416 AGTCAGATGTGTTAGAGGAAACTTTGTTAGTTAATGGAG-GCATCAATGTCAATGGGTTT 474
| ||||||||||||| ||||||||| |||||| | ||| ||||| ||||||||||||||
Sbjct 425 AATCAGATGTGTTAGTGGAAACTTTATTAGTTCA-GGAAAGCATCGATGTCAATGGGTTT 483
Query 475 CAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTCAAAAATCACCCAGACATT 534
|||||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 484 CAAGTTCTTCCTTCTCAGGTAGACTCTGTGAACAATCTCTTTAAAAATTACCCAGACATT 543
Query 535 GCATCAAACTTCCGTCTGGAAAAC-A-CTCATCTAAGAACTACATACTTGAATAGCCTAC 592
|||||||| ||| ||||||| ||| | || ||| ||| | |||||| ||||||||||||
Sbjct 544 GCATCAAAATTCTGTCTGGAGAACCAACT--TCTGAGAGCAACATACATGAATAGCCTAC 601
Query 593 TATGCTTGACTGAGCTTCTGTGCCAGTCCCCTCATAAACTCTCCAATGTTGATCTCGCCA 652
|||||||||||||| ||||| ||||||||||| | |||||||| | ||||||||||||||
Sbjct 602 TATGCTTGACTGAGATTCTGAGCCAGTCCCCTGAGAAACTCTCTAGTGTTGATCTCGCCA 661
Query 653 ATGCGCACTGTACTCTAACTTGTGTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGAAA 712
|||| || ||||| ||| ||| | |||||||||||||||||||||||||||||||||| |
Sbjct 662 ATGCACATTGTACACTATCTTCTCTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGAGA 721
Query 713 AGAAACTGAAAGAGGTTGGTAAGACTCGGATGCAACAACTTGAACAAAATTTGAAGGACT 772
|||||||||||||| || || | |||||| ||||||||||||| ||| ||||||||||||
Sbjct 722 AGAAACTGAAAGAGCTTCGTGATACTCGGGTGCAACAACTTGAGCAAGATTTGAAGGACT 781
Query 773 TGAAGGAGA-GTTTATGCTGGAGTTCTGACGATGAGGATGACCTGAGTCGA-TCTGTT-A 829
||||||| | ||||| |||||| | || |||||||||| | ||||| |||||| |
Sbjct 782 TGAAGGAAAAGTTTACGCTGGA---C-GA---TGAGGATGACTTTTGTCGACTCTGTTTA 834
Query 830 AGACTT 835
||||||
Sbjct 835 AGACTT 840
> Ahg913344 jgi|Araly1|913344|Al_scaffold_0001_3598
Length=828
Score = 676 bits (366), Expect = 0.0
Identities = 654/789 (83%), Gaps = 36/789 (5%)
Strand=Plus/Plus
Query 10 CAATATGAAAAGAGGATAACATGGACGATTAAGAATTTCTCCTCTTTGCAATCTCATGCA 69
||||||||||||| |||||| |||||||||||||||||||||||||||| |||| || |
Sbjct 10 CAATATGAAAAGAAGATAACCTGGACGATTAAGAATTTCTCCTCTTTGCCATCTGATAAA 69
Query 70 ATTTATTTTGATATTTTTGTAGTTGGGGACACCAAATGGCATCTTCTGGCCTATCCCAAG 129
|||| || ||||| ||| |||||||| || ||||||||| |||| ||||||||||||||
Sbjct 70 ATTTGTTCTGATAATTTCGTAGTTGGTGATTCCAAATGGCGTCTTGTGGCCTATCCCAAG 129
Query 130 GGATATGGTGATAG-CATTAATAAATGTTTGTCTCTGTTTCTTGG-TGTTCCTGATCCTG 187
||| |||| ||||| | |||||||| ||||||||||||||| ||| |||| ||||| |||
Sbjct 130 GGACATGGGGATAGTC-TTAATAAAAGTTTGTCTCTGTTTC-TGGCTGTTGCTGATTCTG 187
Query 188 -ATGATTTGCCTTCTGGTTGGAAAAGACACATCATA-TATCGTCTTACTGTTGTTAATCA 245
|| |||||||| ||||||||||||| ||| || | ||||| | ||||||||||||||
Sbjct 188 AAT-CTTTGCCTTATGGTTGGAAAAGAGACA-CAAAGTATCGCCAAACTGTTGTTAATCA 245
Query 246 AA-TGTCGGAGAAACTCTCCAAACAGGAAGTAGCACGGGGCGGGTTTTACCCGAGGTCTC 304
|| | ||||||||||||||| ||||| ||| | || | ||||| | | || | |
Sbjct 246 AACT-TCGGAGAAACTCTCCCAACAGAAAGGAAAAC---CCTGGTTTAATCAGAATTGTG 301
Query 305 TTACCTTCGGTTCCCAAGT-AATGCTTCCACTTACAGAA---CTT----T--ATGGTGGG 354
| | || |||| |||| | |||| |||| ||||| ||| ||| | ||||||||
Sbjct 302 TCAGCTGGGGTTTCCAA-TCAATGGTTCCCCTTACCGAACTTCTTGACATAAATGGTGGG 360
Query 355 TTTTTGGTTAGTGGCCAAGTCAAGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTTGGC 414
||| |||| | ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTCTGGTGAATGGAGAAATCAAGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTTGGC 420
Query 415 AAGTCAGATGTGTTAGAGGAAACTTTGTTAGTTAATGGAGGCATCAATGTCAATGGGTTT 474
||||||||||||||||||||||||| ||||| |||| | ||||| ||||||||||||||
Sbjct 421 AAGTCAGATGTGTTAGAGGAAACTTCATTAGTAAATGAAAGCATCGATGTCAATGGGTTT 480
Query 475 CAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTCAAAAATCACCCAGACATT 534
|||||||||||||||||||||||||||||||| | ||| || | ||| ||||||||||||
Sbjct 481 CAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGAGTCTTTTTATAAAGCACCCAGACATT 540
Query 535 GCATCA-AACTTCCGTCTGGAA-AACACTCATCTAAGAACTA-CATACTTGAATAGCCTA 591
|||||| || ||||||| || ||| | || || ||||| | |||||||||||||| ||
Sbjct 541 GCATCACAA-TTCCGTCCA-AAGAACCCACACCTGAGAAC-AGCATACTTGAATAGCATA 597
Query 592 CTATGCTTGACTGAGCTTCTGTGCCAGTCCCCTC-ATAAACTCTCCAATGTTGATCTCGC 650
||| ||||| | ||| ||||||||| ||||| | | |||||||||||| |||||| ||
Sbjct 598 CTAAGCTTGTCAGAGAGTCTGTGCCAATCCCC-CGAGGAACTCTCCAATGCTGATCTGGC 656
Query 651 CAATGCGCACTGTACTCTAACTTGTGTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGA 710
||||| ||||||| |||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 657 TAATGCATACTGTACACTAACTTGTGTGACAAAAGCGGGGTTTAAATTGGATTGGTTGGA 716
Query 711 AAAGAAACTGAAAGAGGTTGGTAAGACTCGGATGCAACA-ACTTGAACAA-AATTTGAAG 768
|||||||||||||||| ||||| || ||||| ||||| | | |||| || |||| ||||
Sbjct 717 AAAGAAACTGAAAGAGATTGGTGAGGCTCGGCTGCAAGAGA-TTGAGGAAGAATT-GAAG 774
Query 769 GACTTGAAG 777
||| |||||
Sbjct 775 GACATGAAG 783
> Ahg905868 jgi|Araly1|905868|Al_scaffold_0003_2996
Length=882
Score = 139 bits (75), Expect = 3e-32
Identities = 520/722 (72%), Gaps = 81/722 (11%)
Strand=Plus/Plus
Query 39 TAAGA-ATTTCTCCTCTTTGCAATCT-CATGCAATTTATTTTGATATTTTTGTAGTTG-G 95
||||| ||| || ||||||||| | ||| | ||||||| ||||| || || || |
Sbjct 38 TAAGAGATTCCTTTTCTTTGCAAGATGCAT-CGATTTATTCTGATAAATTCGTTGTCGAT 96
Query 96 GGACACCAAATGGCATCTTCTGG-CCTATCCCAAGGGATATGGTGATA-GCATTAATAAA 153
|| | |||||||||||||| || |||||||||||||||| | | | || ||||
Sbjct 97 GG-CTGCAAATGGCATCTTC-GGTTCTATCCCAAGGGATATAAT-A-AGGC--TAAT--- 147
Query 154 TGTTTGTCTCTGTTTCTTGGTGTTCCTGATCCTG-ATGATTTGCCT-TCTGGTTGGAAAA 211
||||||||||||| ||| |||||| ||| || || ||||||| | ||| |||| ||
Sbjct 148 TGTTTGTCTCTGTATCTACATGTTCCGGATATTGAAT-CTTTGCCTAT-TGGATGGAGAA 205
Query 212 GACACATCATATATCGTCT-T-ACTGTT-GTTAATCAA-ATGTC-GGAGAAACTCTCC-A 265
|||| | || || ||| | || || || |||||| || || ||| ||||||||| |
Sbjct 206 TACAC-GC-TAAATTTTCTCTAAC-ATTAGTAAATCAATAT-TCAGGA-AAACTCTCCAA 260
Query 266 AACAGGAAGTAG-CACGGGGCGGGTTTTACCCG-AGGTCTCTTACCT-TCGGTTCCCAAG 322
|| | | || || | | | | ||||| | | | ||| ||| || || |||| ||||
Sbjct 261 AATAAG-AG-AGACTCAGCACTGGTTTGATCAGAAGG-CTCCTAACTGGGGGTT-TCAAG 316
Query 323 TAATGCTT-CCACTTACAGAACTTTATG-----GTGGG-TTTTTGGTTAGTGGCCAAGTC 375
|||| || || || || |||||| ||| | ||| || |||| | ||| || ||
Sbjct 317 AAATGATTACC-CTCACTGAACTTCATGCCAAAGCGGGATTGGTGGTGAATGGAGAACTC 375
Query 376 A-AGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTGTTGGCAAGTCAGATGTG-TTAGAGG 433
| | ||||||||| || | | ||||||||||||||| || || | ||||| | | |||||
Sbjct 376 ACA-ATTGTTGCCAAGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATG-GCTCAGAGG 433
Query 434 AAACTTTGTTAGTTAATGGAGGC-ATCA-ATGTCAATGGGTTTCAAGTTCTTCCTTCACA 491
|| ||| | || || |||| | | | |||||||||| ||||||||||||||||||||
Sbjct 434 AATCTTCATCAG-TAGTGGAAACGGT-AGATGTCAATGGCTTTCAAGTTCTTCCTTCACA 491
Query 492 GGTAGAATCTGTGAA-CAATCTCTTCAAAAATCACCCAGACATTGCATCAAACTTCCGTC 550
||||||||| ||||| | | | || ||| ||||| ||| |||||||||| || ||||
Sbjct 492 GGTAGAATCAGTGAAGCTTT-TGTTTGAAAGTCACCAAGATTTTGCATCAAAATTTCGTC 550
Query 551 TGGAA-AA-C-ACTCATCT-AAGAACTACATACTTGAATAGC-CTACTATG--CTTGACT 603
| || || | | | || | |||| | ||||| ||||| | || || || ||| ||
Sbjct 551 TA-AATAATCCA-T-ATATGAAGA-CGGCATACATGAAT-GTTCT-CT-TGAGCTTAACC 603
Query 604 GAG-CTTCTGTGCC-AGTCCCCTCATA-AACTCTCCAATGTTGATCTCGCCAATGCG--C 658
| | || |||| | || ||||| | |||||||||||| || |||| ||||| |
Sbjct 604 CAAACG-CTATGCCGA-TCGCCTCA-AGAACTCTCCAATGATGGTCTCTTTGATGCGGGC 660
Query 659 ACTGTACTCTAACT-TGTGTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGAAAAGAAA 717
||| ||| | | | | | ||| | |||| || |||||||||||||||||||| ||||||
Sbjct 661 GCTGCACTGTCA-TAT-T-TGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAGAAGAAA 717
Query 718 CT 719
||
Sbjct 718 CT 719
> Ahg905866 jgi|Araly1|905866|Al_scaffold_0003_2994
Length=891
Score = 121 bits (65), Expect = 1e-26
Identities = 162/207 (78%), Gaps = 13/207 (6%)
Strand=Plus/Plus
Query 352 GGG-TTTTTGGTTAGTGGCCAAGTC-AAGATTGTTGCCGAGGTTGGTGTTCTTGAAGTTG 409
||| ||| |||| | ||| || || ||| |||||||| || | | ||||||||||||||
Sbjct 333 GGGATTTCTGGTGAATGGAGAACTCAAAG-TTGTTGCCAAGATAGATGTTCTTGAAGTTG 391
Query 410 TTGGCAAGTCAGATGTGTT-AGAGGAAACTTTGTTAGTTAATGG-AGGCATCA-ATGTCA 466
| || || | |||||| || | ||||| | || | || || ||| | | | | ||||||
Sbjct 392 TAGGAAAATTAGATGT-TTCACAGGAATCGTTATCAG-TAGTGGAAACCGT-AGATGTCA 448
Query 467 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTC-AAAAATCA 524
|||||||||||||||||||||||||||||||||||||||| | | | || ||||| ||
Sbjct 449 ATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAAGCGTT-TGTTTGAAAAA-CA 506
Query 525 CCCAGACATTGCATCAAACTTCCGTCT 551
|| ||| |||| |||||| || |||||
Sbjct 507 CCAAGATATTGTATCAAAGTTTCGTCT 533
> Ahg930958 jgi|Araly1|930958|scaffold_303415.1
Length=959
Score = 91.6 bits (49), Expect = 8e-18
Identities = 78/91 (86%), Gaps = 6/91 (7%)
Strand=Plus/Plus
Query 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTC-AA 518
||||||||||||||||||||||||||||||||| ||||||||||| | | | ||| ||
Sbjct 419 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCTGTGAAACG-TATATTCGAA 477
Query 519 AAATCACCCAGACATTGCA-TCAAACTTCCG 548
||| ||||||||||| ||| | ||| |||||
Sbjct 478 AAA-CACCCAGACATGGCACTAAAA-TTCCG 506
> Ahg898788 jgi|Araly1|898788|Al_scaffold_0005_2754
Length=918
Score = 86.1 bits (46), Expect = 4e-16
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 462 TGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTCAAAAA 521
||| |||||||||||||||||||||||||||||||||||||||| | | | || ||||
Sbjct 504 TGTTAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAGCCGTATTTTTGAAAA 563
Query 522 TCACCCAGACATTGCA 537
|||||||| ||||||
Sbjct 564 GCACCCAGAGATTGCA 579
> Ahg898777 jgi|Araly1|898777|Al_scaffold_0005_2743
Length=957
Score = 82.4 bits (44), Expect = 5e-15
Identities = 144/189 (76%), Gaps = 19/189 (10%)
Strand=Plus/Plus
Query 36 GATTAAGAATTTCTCCTCTTTGCAATCTCATGCAATT-TATTTTGAT-ATTTT-TGTAGT 92
|||||||||||||||||||||||||||| | | || | |||| |||| | || || | |
Sbjct 42 GATTAAGAATTTCTCCTCTTTGCAATCTGA-GAAAATATATTCTGATCAGTTCGTG-A-T 98
Query 93 TGG-GGACACCAAATGGCATCTTCTGGCCTATCCCAAGGGATATGGTGAT-AGCAT-TAA 149
|| || | || ||||| ||||||||||| |||||||||| || || || | || | |
Sbjct 99 TGACGG-CTGCAGATGGCGTCTTCTGGCCTTTCCCAAGGGAAATAGT-ATTAA-ATCTGA 155
Query 150 TAAATGTTTGTCTCTGTTTCTTGGTGTTCCTGA-TCCTGA-TGATTTGCCTTCTGGTTGG 207
| | | || |||||| | ||||| ||| |||| || ||| | ||| ||||| ||| |||
Sbjct 156 TCA-T-TT-GTCTCTATATCTTGAAGTTGCTGAGTC-TGAATCATT-GCCTTGTGGATGG 210
Query 208 AAAAGACAC 216
| |||||||
Sbjct 211 AGAAGACAC 219
> Ahg937123 jgi|Araly1|937123|scaffold_501314.1
Length=1048
Score = 78.7 bits (42), Expect = 6e-14
Identities = 68/80 (85%), Gaps = 4/80 (5%)
Strand=Plus/Plus
Query 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAA-CAATCTCTTCAAA 519
||||||||||||||||||||||||||||||||| ||||| ||||| | | | ||| ||
Sbjct 541 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGCGGAATCCGTGAAACG-TATATTCGAA 599
Query 520 A-ATCACCCAGACATTGCAT 538
| | ||||||||||| ||||
Sbjct 600 AGA-CACCCAGACATGGCAT 618
> Ahg480146 jgi|Araly1|480146|fgenesh2_kg.3__2847__AT2G05420.1
Length=927
Score = 76.8 bits (41), Expect = 2e-13
Identities = 93/117 (79%), Gaps = 8/117 (7%)
Strand=Plus/Plus
Query 380 TTGTTGCCGAGG-TTGGTGTTCTTGAAGTTGTTGGCAAGTCAGATGTGTT-AGAGGAAAC 437
|||||||| ||| | | ||||||||||||||| || || | |||||| || | ||| | |
Sbjct 374 TTGTTGCC-AGGATAGATGTTCTTGAAGTTGTAGGAAAATTAGATGT-TTCACAGGTATC 431
Query 438 TTTGTTAGTTAATGG-AGGCATCA-ATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 492
|| | || || ||| | | | | ||||||||||||||||||||||||||||||||
Sbjct 432 TTCATCAG-TACTGGAAACCGT-AGATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 486
Score = 60.2 bits (32), Expect = 2e-08
Identities = 174/239 (73%), Gaps = 24/239 (10%)
Strand=Plus/Plus
Query 493 GTAGAATCTGTGAA-CAATCTCTTC-AAAAATCACCCAGACATTGCATCAAACTTCCGT- 549
|||||||| ||||| | | | ||| ||||| |||| ||| ||||||||||| || |||
Sbjct 517 GTAGAATCAGTGAATC-GTTTGTTCGAAAAA-CACCTAGATATTGCATCAAAATTTCGTC 574
Query 550 C-TGGAAAACACTCATCT-AAGAACTACATACTTGAATAG-CC-TACTATGCTTGACTGA 605
| ||| || | || | ||| || | ||| ||||| | || || || |||| || |
Sbjct 575 CAAAGAATCCA-T-ATATGAAG-ACGGCGTACATGAAT-GTCCTTA-TAAGCTTAACCAA 629
Query 606 G-CTTCTGTGCCAGTCCCCTCATA-AACTCTCCAATGTTGATCTCG-CCAATGC--GCAC 660
| | |||||||| || ||||| | | |||||||||| ||| | | | ||| || |
Sbjct 630 GAC-GCTGTGCCAATCGCCTCA-AGATCTCTCCAATGAGGATAT-GTCTGGTGCAGGCGC 686
Query 661 TGTACTCTAACTTGTGTGACAAAAGCCGGTTTTAAGTTGGATTGGTTGGAAAAGAAACT 719
|| | | | || | | ||| | |||| || |||||||||||||||||||||||||||||
Sbjct 687 TGCA-T-TGACATATTTGAGAGAAGCAGGGTTTAAGTTGGATTGGTTGGAAAAGAAACT 743
> Ahg324310 jgi|Araly1|324310|fgenesh1_pm.C_scaffold_5001854
Length=1308
Score = 76.8 bits (41), Expect = 2e-13
Identities = 65/76 (86%), Gaps = 4/76 (5%)
Strand=Plus/Plus
Query 464 TCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA-TCTGTGAACAATCTCTTC-AAAAA 521
||||||||||||||||||||||||||||||| ||| | ||||| | | | || |||||
Sbjct 875 TCAATGGGTTTCAAGTTCTTCCTTCACAGGT-GAAATTTGTGAGCCGTATTTTTGAAAAA 933
Query 522 TCACCCAGACATTGCA 537
| ||||||||||||||
Sbjct 934 T-ACCCAGACATTGCA 948
> Ahg924373 jgi|Araly1|924373|scaffold_105654.1
Length=1003
Score = 75.0 bits (40), Expect = 8e-13
Identities = 62/72 (86%), Gaps = 4/72 (6%)
Strand=Plus/Plus
Query 466 AATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGA-ACA-ATCTCTTCAAAAATC 523
|||||||||||||||||||||||||||| ||||||||||| || || | || ||| | |
Sbjct 570 AATGGGTTTCAAGTTCTTCCTTCACAGGAAGAATCTGTGAGACGTATAT-TTGAAAGA-C 627
Query 524 ACCCAGACATTG 535
| ||||||||||
Sbjct 628 ATCCAGACATTG 639
> Ahg938811 jgi|Araly1|938811|scaffold_503002.1
Length=1099
Score = 71.3 bits (38), Expect = 1e-11
Identities = 67/81 (83%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAATCTGTGAACAATCTCTTC-AAA 519
|||||||||||||||||||||||||||||||||| | | ||||| | | | || |||
Sbjct 652 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTGGGTTTTGTGAGCCGTATTTTTGAAA 711
Query 520 AATCACCCAGACATTGCATCA 540
|| |||||||| | |||||||
Sbjct 712 AA-CACCCAGAGACTGCATCA 731
> Ahg937127 jgi|Araly1|937127|scaffold_501318.1
Length=586
Score = 63.9 bits (34), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAGGTAGAA 498
|||||||||||||||||||||||||||||||| |||||
Sbjct 532 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAG-TAGAA 568
> Ahg897254 jgi|Araly1|897254|Al_scaffold_0005_1220
Length=1629
Score = 60.2 bits (32), Expect = 2e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 461 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 492
||||||||||||||||||||||||||||||||
Sbjct 1223 ATGTCAATGGGTTTCAAGTTCTTCCTTCACAG 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5