BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31410.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473635 jgi|Araly1|473635|fgenesh2_kg.1__3589__AT1G31410.1 2466 0.0
> Ahg473635 jgi|Araly1|473635|fgenesh2_kg.1__3589__AT1G31410.1
Length=1745
Score = 2466 bits (1335), Expect = 0.0
Identities = 1608/1739 (92%), Gaps = 21/1739 (1%)
Strand=Plus/Plus
Query 10 TATCGATGGCTACGGCGGCGATTATTTCCGTGAAACCGCCGGCGAGCTTCTACTGCGGAG 69
||||||||||||||||| ||||| ||||| ||||||||||||||||||||| | ||| |
Sbjct 1 TATCGATGGCTACGGCGACGATTCTTTCCTTGAAACCGCCGGCGAGCTTCTTCCACGGTG 60
Query 70 GAAACCGACGCGACGGAGGAAGGGGAATCACCATTGCACGAGTTTCTCGAGACGAACGGT 129
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 61 GAAACCGACGCGACGGAGGAAGGGGAATCATTGTTGCACGAGTTTCTCGAGGCGAACGGT 120
Query 130 TTCATGAGAGGATCGTTGGTCTCTCTGCCTCGACCGTGTTGTTCATCGGTTTAAGTAGCC 189
||||||||||||||||||||||||| || ||||| ||||||||| |||||||||| ||||
Sbjct 121 TTCATGAGAGGATCGTTGGTCTCTCCGCTTCGACTGTGTTGTTCCTCGGTTTAAGCAGCC 180
Query 190 TCCGCGTCTGTTCTCCGGCCTCCGCTCGAATACTACCACCGCCGATTGTCGTTACAGAGA 249
| ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 181 TTCGCGTCTGTTCTCCGGCCTCCGCTCGATTACTACCTCCGCCGATTATCGTTACAGAGA 240
Query 250 ATGAAATCAACACAGAAACTGTAGCTGGTGAAGAGAATCTAAATGAAGTTGAAGATGAAG 309
|||||||||| ||||||||||||||||||||||||||||||| ||| ||||| ||| |
Sbjct 241 ATGAAATCAATACAGAAACTGTAGCTGGTGAAGAGAATCTAATTGATGTTGACGAT--A- 297
Query 310 AAAAACTGGAAGCTGATTTCGAAGCGTACAAGTCTAAAGTGTATTCTCTTACTGTCCCGC 369
||||| ||||||| ||||||||||| || ||| |||||||||||||||| || || ||||
Sbjct 298 AAAAATTGGAAGCAGATTTCGAAGCTTATAAGGCTAAAGTGTATTCTCTGACGGTGCCGC 357
Query 370 TAAAACTCGTTGCCTTGCGTGGCTCAGTGCCACCATCATGGATCAAGGAGTTTATGAGCT 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TAAAACTCGTTGCCTTGCGTGGCTCAGTGCCACCATCATGGATCAAGGAGTTTATGAGCT 417
Query 430 CACAAGGGAAGAGAGTGAGGTTAAAGACTCAGTTTCGAGGAAATCTTGAAGAGATCTT-T 488
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| || |
Sbjct 418 CACAAGGGAAGAGAGTGAGGTTAAAGACTCGGTTTCGAGCAAACCTTGAAGAGATTTTCT 477
Query 489 TTCGATCTATCGAAACCAAGTAAGAATGGAAAAAAGGGGGCTGCTTCAACTGCAGCAGCT 548
|| ||| ||||||| || | || ||| ||| ||||||| | ||||||||||||||||||
Sbjct 478 TT-GATTTATCGAAGCCTACTAGGAAAGGACAAAAGGGTTCCGCTTCAACTGCAGCAGCT 536
Query 549 GATATGATCAGCATTGGTGATTCTTGGCTTAGTTTTGCTATTAAGGAAAAGCTAATTGAG 608
|||||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||
Sbjct 537 GATATGATCAGCATTGGTGATTCTTGGCTTAGTTATGCTATTAGGGAGAAGCTGATTGAG 596
Query 609 CCAATGAAAGGGATAGAAGATCAAGACTGGTATAAAGGCTTGAGTGATAAATGGAAGATT 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCAATGAAAGGGATAGAAGATCAAGACTGGTATAAAGGCTTGAGTGATAAATGGAAGATT 656
Query 669 TATCTCCGCAGGAACTATGCGGGAGAAAAAGCTCCTGACGGTGAAACGTGGGCTGTGCCA 728
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 TATCTCCGCAGGAACTATTCGGGAGAAAAAGCTCCTGATGGTGAAACGTGGGCTGTGCCA 716
Query 729 TACCGCTGGGGCACCATGGTTATAGCATACAAAAAGAGCAAATTTCAGAATTATAAATTG 788
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 717 TACCGATGGGGCACCATGGTAATAGCATACAAAAAGAGCAAATTTCAGAATTATAAATTG 776
Query 789 GCACCGATAGAGGACTGGGCTGATCTGTGGCGACCCGAGCTTGCAGG-AAGGATCGCAAT 847
|| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 777 GCTCCGATAGAGGACTGGGCTGATCTGTGGCGACCCGAGCTTGCAGGGAAG-ATCGCAAT 835
Query 848 GGTGAATTCTCCTAGAGAGGTTGTTGGTGCTGTTCTCAAATACATGAGAGCATCATACAA 907
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 836 GGTGAATTCTCCTAGAGAGGTTGTTGGTGCTGTTCTCAAATACATGGGAGCATCATACAA 895
Query 908 TACGACAGACCTGGATTCACAAGTTCCTGGCGGAAGATTAGCAGTGGAGAAAAATCTGGC 967
|||||||||||||||||||||||| ||| |||||| | || |||||||||||||| ||
Sbjct 896 CACGACAGACCTGGATTCACAAGTTGTTGGAGGAAGAATCGCCGTGGAGAAAAATCTAGC 955
Query 968 ATCACTCATGAAACAGATTAGACTATTTGATAGTAACAACTATTTAAAAGCTTTCAATGT 1027
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 956 ATCACTCATGAAACAGATTAGACTGTTTGACAGTAACAACTATTTAAAAGCTTTCAATGT 1015
Query 1028 CGGAGATGTCTGGGTCACTGTTGGTTGGAGCAGCGATGTTATCCCTGTCGCAAAACGTAT 1087
|||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 1016 TGGAGATGTTTGGGTCACTGTTGGGTGGAGCAGTGATGTTATCCCTGTTGCAAAACGTAT 1075
Query 1088 GTCTAATGTTACAGTGATTGTTCCCAAATCCGGTGCCACCTTATGGGCTGATCTATGGGC 1147
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1076 GTCTAATGTTACAGTGATTGTTCCCAAATCCGGTGCTACCTTATGGGCTGATCTATGGGC 1135
Query 1148 GATCCCGGCTGTTTCTGACTCTGGTAAAGAAGCAGAACAAAGAGGAGGACGAGTCCGAGG 1207
||||| ||||| |||||||||||||||||||| ||||| | ||||||| ||||||||||
Sbjct 1136 AATCCCAGCTGTCTCTGACTCTGGTAAAGAAGCGGAACAGATAGGAGGAAGAGTCCGAGG 1195
Query 1208 CCCATCTCCATTAATCAACCAGTGGATAGAATTCTGCTTGCAACCTGCAAGATCGTTACC 1267
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1196 CCCATCTCCATTAATCAACCAGTGGATAGAATTCTGCTTGCAACCCGCAAGATCATTACC 1255
Query 1268 ATTCACACGGGAAGTAATTCCTGGTGCATCTCCTTCAGCTCTTGATGGTCCTCTGGTTAC 1327
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1256 CTTCACACGGGAAGTGATTCCTGGTGCATCTCCTTCAGCACTTGATGGTCCTCTGGTTAG 1315
Query 1328 AGAACCCGAAAAAACAAAGAAAGACAGAACAAAACTGGACACAAACCTGGTCACAGGTGT 1387
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AGAACTCGAAAAAACAAAGAAAGACAGAACAAAACTGGACACAAACCTGGTCACAGGTGT 1375
Query 1388 TCCTCCTCCGGAGATCTTGTCTAAGTGTGAGTTCTTGGAACCTTTACCAGAGGCTACGCT 1447
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 TCCTCCTCCAGAGATCTTGTCTAAGTGTGAGTTCTTGGAACCTTTACCAGAGGCTACGCT 1435
Query 1448 ATCGGAATATCGGCTTCTGATTGAAACTGTAAGGAAGCAAAGCCAAAGAC-CTGGCCTTG 1506
|| |||||| ||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 1436 ATTGGAATACCGGCTTCTGATTGAAACTGTAAGAAAGCAAAGCCAAAGACAC-GGCCTTG 1494
Query 1507 TGGAGAAACTAAAGGACATTGTTTCAATTAAGGTTCGAGGATTTAGGGCAAAGCTTGACT 1566
|| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1495 TGAAGAAAATACAGGACATTGTTTCAATTAAGGTTCGAGGATTTAGGACAAAGCTTGACT 1554
Query 1567 CCGAGAT-GAATAAGAACATTTGAGAGACGGACAAAA-GTGGAAATGGAATCATTTGTAT 1624
||| | | ||| ||||||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 1555 CCGGG-TCGAA---GAACATTTGAGAGACTGACAAAAAGTGGAAATAAAATCATTTGTAT 1610
Query 1625 G---A-TTACATAGAGCAACTTCATGTTGGTTAACATAAGGGGTTTT-CTATCTCCTTAT 1679
| | |||| ||||||||||||| |||| |||||| | ||| |||| |||||||||| |
Sbjct 1611 GGTTAATTACTTAGAGCAACTTCACGTTGTTTAACA-ATGGGATTTTTCTATCTCCTTGT 1669
Query 1680 AACAGAGTATCATGTCATGAAGAGCCAGAGGCTGATCGCCTTTGCTCATGTTACTAGTT 1738
|||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 1670 AACAAAGTATCATGTCATGAAGAGCTAGAGGCTGATCAAATTTGCTCATGTTATTAGTT 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5