BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31440.1
Length=1870
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922633 jgi|Araly1|922633|scaffold_103914.1 2172 0.0
> Ahg922633 jgi|Araly1|922633|scaffold_103914.1
Length=1361
Score = 2172 bits (1176), Expect = 0.0
Identities = 1287/1342 (96%), Gaps = 1/1342 (0%)
Strand=Plus/Plus
Query 236 CATGGAAGCTATAAGAAAGCAAGCTGCGAAGCTCAGAGAGCAAGTCGCGAGGCAACAGCA 295
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 21 CATGGAAGCTATTAGAAAGCAAGCGGCTAAGCTCAGAGAGCAAGTCGCGAGGCAACAGCA 80
Query 296 AGCGGTTTTGAAGCATTTAGGGCATGTTAATGCTGATGCTGTTGTTGTTGATGAAGAAGA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 AGCGGTTTTGAAGCATTTAGGGCATGTTAATGCTGATGCTGTTGTTGTTGATGAAGAAGA 140
Query 356 GCTTCATTGTCATCAGAAACTTCAAGATCTTTATAGCTCTACTAAAGCTGCTAAGCGTTT 415
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 141 GCTTCACTGTCATCAGAAACTTCAAGATCTTTATAGCTCTACTAAGGCTGCTAAGCGTTT 200
Query 416 GCAAAGGAACATTGTTCGTGGACTCGAAGGTTTCATTGCGACTGGCACAAAGGTTGTTGA 475
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 201 GCAAAGGAATATTGTTCGTGGACTCGAAGGTTTCATTGCGACAGGCACGAAGGTTGTAGA 260
Query 476 GATAGGGTTGAAGTTTGCTGAAGATTTCAAGAAATATGGAGATGAGAATCCTGATGCTAA 535
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 261 GATAGGGTTGAAGTTTGCTGAAGATTTTAAGAAATATGGAGATGAGAATCCTGATGCTAA 320
Query 536 TACTCCTCTATCAAGAGTCGCACATCACTTTGGGACCTCTTACAAGTCGGTGGAAGGCGA 595
||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 321 TACTCCTCTCTCAAGAGTTGCTCATCACTTTGGGACCTCTTACAAGTCGGTGGAAGGCGA 380
Query 596 GAGGGAAACTCTCCTCGGAGTTCTTAGTGAGCAGGTTTGTGAGCCAATTCGTACAATGAT 655
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 381 GAGGGAAACTCTCCTCGGAGTTCTTAGTGAGCAGGTTTGTGAACCAATTCGTACGATGAT 440
Query 656 ATATAGTGCGCCTTTGGAGGATGCTCGGCATTTGGTGAATCACTATGACAGGCTGAGACA 715
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 441 ATATAGTGCGCCTTTGGAGGATGCTCGGCATTTAGTGAATCTCTATGACAGGCTGAGACA 500
Query 716 AGAAGTCGAAGCTCAGGCAACTGATGTACTGAGGAGAAGATCAAAGTTGAAGGAATCTGA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGAAGTCGAAGCTCAGGCAACTGATGTACTGAGGAGAAGATCAAAGTTGAAGGAATCTGA 560
Query 776 TATTTCTGAAGAAGCCTACATAAAACTTAAGAATTCTGAATCGAGATTGGCTGAGCTCAA 835
||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 561 TATTTCTGAAGAAGCATACATCAAACTTAAGAATTCCGAATCGAGATTAGCTGAGCTCAA 620
Query 836 ATCAAGTATGAAAACTCTTGGTAAAGAAGCTACTAAGGCCATGTTGGAAGTCGACGATCA 895
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 621 ATCAAGTATGAAAACTCTTGGCAAAGAAGCTACTAAGGCCATGTTGGAAGTCAACGATCA 680
Query 896 GCAGCAGAACGTAACTTCTCAGCGCCTCCGTGCTCTGGTTGAAGCTGAAAGATCATATCA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 GCAGCAGAACGTAACTTCTCAGCGCCTCCGTGCTCTGGTTGAAGCTGAAAGATCATATCA 740
Query 956 TCGTAATGCTCTTGATATCCTCGACAAGCTACATTCCGAGATGATTGCTGAGGAAGAAGC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCGTAATGCTCTTGATATCCTCGACAAGCTACATTCCGAGATGATTGCTGAGGAAGAAGC 800
Query 1016 TATAGGATCATCACCAAAGTCACTACCTTTACATATAGAGGATAGTGCTTCTCTTCCCCA 1075
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||
Sbjct 801 TATAGGATCATCACCAAAGTCACCAACTTTACATATAGAGGATAGTGTTTCTCTTCCCCA 860
Query 1076 ACAAGAACCGAATTCAAATTCCTCAGGAGAGATCAAATCAAATCCCTTGGGAAAGATCAA 1135
| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 861 AGAAGAACCGAATTCAAATCCCTCGGGAGAGATCAAATCAAATCCCTCGGGAAAGATCAA 920
Query 1136 AGCAAGTCGTCGAGAAGAAATCAAGTCTAATCCCCAAGAAGTAACCAAACCTAGTCCCAA 1195
| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 921 ATCAAGTCGTCGAGAAGAAATCAAGTCTAATCCCCAAGAAGTAACCAAACCCAATCCCAA 980
Query 1196 GGACGAAATGAAGTCCAGTCCACAAGAAGAAACCAAATCCAATCATCAGAAAGAAATTAA 1255
|||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||
Sbjct 981 AGACGAAATGAAGTCCAGTCCCCAAGAAGAAACCAAATCCAATCACCATAAAGAAATCAA 1040
Query 1256 GTCTAGTCCACAGGAAGAGATCAAGAAGTCCAATGGGTCTGATGATCATCACAATCATCA 1315
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1041 GTCTAGTCCACAGGAAGAGATCAAGAAGTCCAATGGATCTGATGATCATCACAACCATCA 1100
Query 1316 ACTTCTCAGCCAGAATGATTCCTACTTTCTTGCAAAGGTTGTGCACCCGTTTGATGCTCA 1375
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ACTTCTCAGTCAAAATGATTCCTACTTTCTTGCAAAGGTTGTGCACCCGTTTGATGCTCA 1160
Query 1376 AGCCCCAGGGGAACTCAGTCTCGCTGTCGATGATTATGTAATTGTGCGACAGGTGGCTGG 1435
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1161 AGCCCCAGGGGAACTCAGTCTAGCTGTCGATGATTATGTAATTGTGCGACAGGTGGCTGG 1220
Query 1436 TACAGGCTGGTCAGAAGGAGAATACAAAGGCAAAGCTGGATGGTTTCCGTCTGCGTACGT 1495
|||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 1221 GACAGGCTGGTCAGAAGGAGAATACAAGGGCAAAGCCGGATGGTTTCCGTCGGCTTACGT 1280
Query 1496 AGAGAAACAAGAGAAAGCTCCGGCAAGCAAGATCGTGGAATCAAACTCCAAGCAACAGTG 1555
||||||||||||||||||||||| |||||||| |||||||||||| |||||||||| ||
Sbjct 1281 TGAGAAACAAGAGAAAGCTCCGGCCAGCAAGATTGTGGAATCAAACCCCAAGCAACAATG 1340
Query 1556 ATGCCCTTTCTTTAACATATAC 1577
|| |||||||||||||| ||||
Sbjct 1341 AT-CCCTTTCTTTAACAAATAC 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70238411780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5