BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31450.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913338 jgi|Araly1|913338|Al_scaffold_0001_3592 1906 0.0
Ahg915392 jgi|Araly1|915392|Al_scaffold_0008_143 444 9e-124
Ahg915977 jgi|Araly1|915977|Al_scaffold_0008_728 433 2e-120
Ahg896469 jgi|Araly1|896469|Al_scaffold_0005_435 433 2e-120
> Ahg913338 jgi|Araly1|913338|Al_scaffold_0001_3592
Length=1338
Score = 1906 bits (1032), Expect = 0.0
Identities = 1249/1351 (92%), Gaps = 26/1351 (2%)
Strand=Plus/Plus
Query 1 ATGGCAACCAAAACTTTTCTCTACTGTTCTCTCTTAGCCATCAGCTTCTTCTTT-GCTTC 59
||||||||||||||| | ||||||||||| ||||||||||||| | |||| ||| ||||
Sbjct 1 ATGGCAACCAAAACTCTCCTCTACTGTTCGCTCTTAGCCATCACCATCTT-TTTCACTTC 59
Query 60 CAATTCTTCAGCTAACC-GAGAGAACTTAACCGTCGAGCTAATCCACCGTGACTCTCCTC 118
|| |||||||||| ||| || | ||| ||||||||||||||||||||||||||||||| |
Sbjct 60 CACTTCTTCAGCTCACCGGA-AAAACCTAACCGTCGAGCTAATCCACCGTGACTCTCCCC 118
Query 119 ATTCTCCACTCTACAACCCTCACCACACTGTCTCTGACCGTCTCAACGCTGCTTTCCTCC 178
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 119 ATTCTCCACTCTACAACCCTCAGCACACTGTCTCCGACCGTCTCAACGCCGCTTTCCTCC 178
Query 179 GATCAATCTCACGTTCTCGCCGTTTCACAACCAAAACCGATCTCCAATCCGGTTTAATCT 238
| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 GCTCAATCTCACGTTCCCGCCGTTTCTCAACCAAAACCGATCTCCAATCCGGTTTAATCT 238
Query 239 CAAATGGCGGCGAATACTTCATGTCCATCTCAATCGGTACTCCACCGTCGAAAGTT--TT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 239 CAAATGGCGGCGAATACTTCATGTCCATCTCAATCGGTACTCCACCGTCGAAA-TTCCTT 297
Query 297 CGCCATTGCTGACACGGGAAGTGACCTAACTTGGGTCCAATGTAAGCCATGTCAACAATG 356
||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 298 -GCCATTGCTGACACGGGAAGTGACCTAACATGGGTTCAGTGCAAGCCATGTCAACAATG 356
Query 357 TTACAAACAAAACAGTCCACTCTTCGACAAGAAGAAATCTTCCACCTACAAAACAGAATC 416
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 TTACAAGCAAAACACTCCACTCTTCGACAAGAAGAAATCTTCCACCTACAAAACTGAATC 416
Query 417 TTGCGATTCAAAAACCTGTCAA-GCCTTGTCCGAACACGAAGAAGGATGCGACGAATC-T 474
||| ||||| | |||||| ||| || ||||| |||||||||||||| |||||||||||
Sbjct 417 TTGTGATTCCATAACCTG-CAATGCGTTGTCTGAACACGAAGAAGGTTGCGACGAATCGC 475
Query 475 AAAGACATCTGCAAATACCGTTACTCTTATGGAGA-TAATTCGTTTACCAAAGGAGATGT 533
| || ||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 476 GCA-ACGCCTGCAAATACCGTTACTCTTATGGAGACGAA-TCGTTTACCAAAGGAGAGGT 533
Query 534 TGCGACCGAAACAATCTCCATTGATTCTTCCTCTGGCTCCTCTGTTTCTTTCCCCGGTAC 593
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 TGCAACCGAAACAATCTCCATTGATTCTTCCTCTGGCTCCCCTGTTTCTTTCCCCGGTAC 593
Query 594 TGTCTTTGGTTGCGGCTACAACAACGGTGGTACATTCGAAGAAACCGGATCCGGAATCAT 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGCCTTTGGTTGCGGCTACAACAACGGTGGTACATTCGAAGAAACCGGATCCGGAATCAT 653
Query 654 CGGACTCGGAGGTGGTCCATTATCGTTAGTTTCCCAGCTTGGTTCTTCCATAGGGAAGAA 713
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 CGGACTCGGAGGTGGTCCATTATCGTTAGTTTCCCAGCTCGGTTCTTCCATAGGGAAGAA 713
Query 714 ATTCTCGTATTGCTTGTCACACACGGCAGCTACAACAAACGGCACAAGCGTCATAAACCT 773
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 714 ATTCTCTTATTGCTTGTCACACACGTCAGCTACAACAAACGGCACAAGCGTCATAAACCT 773
Query 774 AGGAACCAACTCGAT-ACCTTCCAATCCAAGCAAAGACTCCGCTACGCTCACTACACCCT 832
||||||||||||||| || |||||| ||||||||||| ||||||| ||||||||||| |
Sbjct 774 AGGAACCAACTCGATGAC-TTCCAAGCCAAGCAAAGATTCCGCTATTCTCACTACACCGT 832
Query 833 TAATCCAAAAAGACCCCGAGACTTACTATTTCTTGACACTCGAAGCAGTCACCGTCGGCA 892
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 833 TAATCCAAAAAGACCCCGAGACTTACTATTTCTTGACTCTCGAAGCAATCACCGTCGGCA 892
Query 893 AAACCAAGCTTCCATACACCGGAGGAGGA---TACGGATTAAACGGGAAATCATCAAAGA 949
||||||||||||||||||||||||||||| ||| | |||||| |||||||| || ||
Sbjct 893 AAACCAAGCTTCCATACACCGGAGGAGGAGGGTACAGTTTAAACCGGAAATCA--AA-GA 949
Query 950 -GAACCGGAAACATCATAATCGATTCCGGTACAACCCTTACCCTTCTCGACTCAGGATTT 1008
|| |||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 950 AGA-CCGGTAACATCATAATCGACTCCGGCACAACTCTTACGCTTCTCGACTCAGGATTT 1008
Query 1009 TACGATGACTTTGGTACGGCCGTGGAAGAATCAGTAACCGGAGCAAAGCGTGTGAGTGAT 1068
|| |||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 1009 TATGATGACTTTGGTGCGGTGGTGGAAGAATCAGTGACCGGAGCTAAGCGTGTGAGTGAT 1068
Query 1069 CCACAAGGGCTTTTAACACATTGTTTCAAATCCGGAGACAAAGAGATCGGTTTGCCGGCG 1128
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1069 CCACAAGGGATTTTAACACACTGTTTCAAATCCGGAGACAAAGAGATCGGTTTGCCGACA 1128
Query 1129 ATAACAATGCATTTCAC-GAACGCCGACGTGAAGCTGAGTCCGATAAACGCGTTCGTGAA 1187
||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||
Sbjct 1129 ATAACAATGCATTTCACCGGA-GCCGACGTGAAGCTGAGTCCGATAAACTCGTTCGTGAA 1187
Query 1188 ACTAAATGAAGATACAGTGTGCTTGAGTATGATTCCGACAACTGAAGTTGCTATATACGG 1247
||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ACTGAGTGAAGATATAGTGTGCTTGAGTATGATTCCGACAACTGAAGTTGCTATATACGG 1247
Query 1248 AAACATGGTTCAAATGGATTTCCTTGTTGGCTATGACTTGGAGACCAAAACGGTATCGTT 1307
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AAATATGGTTCAAATGGATTTTCTTGTTGGCTATGACTTGGAGACCAAAACGGTATCGTT 1307
Query 1308 TCAACGCATGGATTGCTCCGGGAACTTATGA 1338
||||||||||||||||||||||||||| |||
Sbjct 1308 TCAACGCATGGATTGCTCCGGGAACTTGTGA 1338
> Ahg915392 jgi|Araly1|915392|Al_scaffold_0008_143
Length=405
Score = 444 bits (240), Expect = 9e-124
Identities = 292/317 (92%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 82 AACTTAACCGTCGAGCTAATCCACCGTGACTCTCCTCATTCTCCACTCTACAACCCTCAC 141
||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 64 AACCTAACCGTTGAGCTAATCCACAGTGACTCTCCTCATTCTCCACTTTACAACCCTCAC 123
Query 142 CACACTGTCTCTGACCGTCTCAACGCTGCTTTCCTCCGATCAATCTCACGTTCTCGCCGT 201
||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 124 CACACCGTCTCCGACGGTCTCAACGCTGCTTTCCTCCGCTCAATCTCACGCTCTCGCCGT 183
Query 202 TTCACA-ACCAAAACCGATCTCCAATCCGGTTTAATCTCAAATGGCGGCGAATACTTCAT 260
|||| | ||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 184 TTCA-ATACCAAAACCGACCTCCAATCCGGGTTGATCTCAAATGGCGGCGAATACTTCAT 242
Query 261 GTCCATCTCAATCGGTACTCCACCGTCGAAAGT-TTTCGCCATTGCTGACACGGGAAGTG 319
| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct 243 GAGTATCTCAATCGGTACTCCTCCGTCGAAAGTCCTT-GCCATCGCTGACACGGGAAGTG 301
Query 320 ACCTAACTTGGGTCCAATGTAAGCCATGTCAACAATGTTACAAACAAAACAGTCCACTCT 379
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ACCTAACTTGGGTTCAATGCAAGCCATGTCAACAATGTTACAAACAAAACAGTCCACTCT 361
Query 380 TCGACAAGAAGAAATCT 396
|||||||||||| ||||
Sbjct 362 TCGACAAGAAGATATCT 378
> Ahg915977 jgi|Araly1|915977|Al_scaffold_0008_728
Length=405
Score = 433 bits (234), Expect = 2e-120
Identities = 290/317 (91%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 82 AACTTAACCGTCGAGCTAATCCACCGTGACTCTCCTCATTCTCCACTCTACAACCCTCAC 141
||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 64 AACCTAACCGTTGAGCTAATCCACAGTGACTCTCCTCATTCTCCACTTTACAACCCTCAC 123
Query 142 CACACTGTCTCTGACCGTCTCAACGCTGCTTTCCTCCGATCAATCTCACGTTCTCGCCGT 201
||||| ||||| ||| |||| ||||||||||| ||||| ||||||||||| |||||||||
Sbjct 124 CACACCGTCTCCGACGGTCTAAACGCTGCTTTTCTCCGCTCAATCTCACGCTCTCGCCGT 183
Query 202 TTCACA-ACCAAAACCGATCTCCAATCCGGTTTAATCTCAAATGGCGGCGAATACTTCAT 260
|||| | ||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 184 TTCA-ATACCAAAACCGACCTCCAATCCGGGTTGATCTCAAATGGCGGCGAATACTTCAT 242
Query 261 GTCCATCTCAATCGGTACTCCACCGTCGAAAGT-TTTCGCCATTGCTGACACGGGAAGTG 319
| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct 243 GAGTATCTCAATCGGTACTCCTCCGTCGAAAGTCCTT-GCCATCGCTGACACGGGAAGTG 301
Query 320 ACCTAACTTGGGTCCAATGTAAGCCATGTCAACAATGTTACAAACAAAACAGTCCACTCT 379
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ACCTAACTTGGGTTCAATGCAAGCCATGTCAACAATGTTACAAACAAAACAGTCCACTCT 361
Query 380 TCGACAAGAAGAAATCT 396
|||||||||||| ||||
Sbjct 362 TCGACAAGAAGATATCT 378
> Ahg896469 jgi|Araly1|896469|Al_scaffold_0005_435
Length=621
Score = 433 bits (234), Expect = 2e-120
Identities = 298/329 (91%), Gaps = 4/329 (1%)
Strand=Plus/Plus
Query 70 GCTAACCGAGAGAACTTAACCGTCGAGCTAATCCACCGTGACTCTCCTCATTCTCCACTC 129
|||||| | || ||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 268 GCTAACAGGGAAAACCTAACCGTTGAGCTAATCCACCGTGACTCTAATCATTCTCCACTT 327
Query 130 TACAACCCTCACCACACTGTCTCTGACCGTCTCAACGCTGCTTTCCTCCGATCAATCTCA 189
||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 328 TACAACCCTCACCACACCGTCTCCGACGGTCTCAACGCTGCTTTCCTCCGCTCAATCTCA 387
Query 190 CGTTCTCGCCGTTTCACA-ACCAAAACCGATCTCCAATCCGGTTTAATCTCAAATGGCGG 248
|| ||||||||||||| | ||||||||||| ||||||||||| || || |||||||||||
Sbjct 388 CGCTCTCGCCGTTTCA-ATACCAAAACCGACCTCCAATCCGGGTTGATTTCAAATGGCGG 446
Query 249 CGAATACTTCATGTCCATCTCAATCGGTACTCCACCGTCGAAAGT-TTTCGCCATTGCTG 307
||||||||| ||| ||||||||||||||||| ||||||||||| || ||||| ||||
Sbjct 447 CGAATACTTGATGAGTATCTCAATCGGTACTCCTCCGTCGAAAGTCCTT-GCCATCGCTG 505
Query 308 ACACGGGAAGTGACCTAACTTGGGTCCAATGTAAGCCATGTCAACAATGTTACAAACAAA 367
||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 506 ACACGGGAAGTGACCTAACTTGGGTTCAATGCAAGCCATATCAACAATGTTACAAACAAA 565
Query 368 ACAGTCCACTCTTCGACAAGAAGAAATCT 396
|||||||||||||||||||||||||||||
Sbjct 566 ACAGTCCACTCTTCGACAAGAAGAAATCT 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5