BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31460.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922631 jgi|Araly1|922631|scaffold_103912.1 1192 0.0
Ahg473629 jgi|Araly1|473629|fgenesh2_kg.1__3583__AT1G31470.1 699 0.0
> Ahg922631 jgi|Araly1|922631|scaffold_103912.1
Length=950
Score = 1192 bits (645), Expect = 0.0
Identities = 857/955 (90%), Gaps = 32/955 (3%)
Strand=Plus/Plus
Query 735 GAAGCTTGATCTCATCGATAATGGCGGATTTTGGGTATTTTTCAGATACAGACGATTCAG 794
|||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 GAAGCTTGATATCATCGACAATGGCGGATTTTGGGTATTTTTCGGATACAGACGATTCAG 60
Query 795 CAGTGGAAGAGCTAATTTCGCAAGCGAAGGAGCTTTCTGATTTGGAGCAAGTAGCTGCTA 854
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 61 CAGTGGAAGAGCTAATTTCGCAAGCGAAGGAGCTTTCTGCTTTGGAGCAAGTAGCTGCTA 120
Query 855 TCAATTGTTCTGGATTCACCGATTCTACTCTTCCAGATGATCTCGAATCTCGCTTCCGTC 914
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 121 TCAATTGTTCTGGTTTCACCGATTCTACTCTTCCCGATGATCTCGAATCTCGTTTCCGTC 180
Query 915 GCCTCAAATCTCTTCCAGCTGCTCCACGACACGAACCGGTATCTTCATCTTCTTCGATGA 974
| |||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 181 GACTCAAATCTCTTCCAGCTTCTCCACGACACGAACCGGTTTCTTCGTCTTCTTCGATGA 240
Query 975 ATAGGCAGAAGCCTCTCTCACATTCCAAAAGCGT------GAAT-GT--GAATTTCTCA- 1024
||||| |||| | |||| |||| ||||| ||||| |||| | ||| |
Sbjct 241 ATAGGAAGAATCATCTCACACACTCCAAGAGCGTGGCGACGAATCATCCGAA-GGAGGAT 299
Query 1025 G-GAAA-TC-GAAGAAATCCAGGTaaaaaaaCTGGCTCTGTGAGTTTATCTGATGAAGAT 1081
| |||| || | ||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 300 GTGAAATTCTCAGGAAATCCAGGTAAAAAACCTGGTTCTGTGAGTTTATCTGAT---GA- 355
Query 1082 TCGAGTAATCTCTCGAGaaaaaaaCGTGATCTGGATTTGAAATCGAGTTCTCAAGCTGAG 1141
|| | | |||||||| ||||| |||||||| |||||||||||||||| ||||||
Sbjct 356 ---AG--A--T-TCGAGAAACAAACGAGATCTGGAAATGAAATCGAGTTCTCAGGCTGAG 407
Query 1142 CTTGTCTCTAATGGAAGTGGAGATTTCTCAGATTCTGGAAACATCAGTGAGAGTAAAATT 1201
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 408 CTTGTCTCTAACGGAAGTGGAGATTTCTCAGATTCTGGGAACATAAGTGAGAGTAAAATT 467
Query 1202 CTCTCGCCAGTGAAACAACAAACGAAGAAGAAGCTTCCTAAAGAGAAACGAAGAATCGTA 1261
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 468 TTCTCGCCAGTGAAACAACAAACGAAGAAGAAGCTTCCTAAAGAGAAACGCAGAATCGTT 527
Query 1262 TCACCATCTTCATCATCGTCAATCGATTTAG---CTACACCACCATCAACAGATTCAGAA 1318
|||||||| || ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 528 TCACCATCATCCTCATCTTCGATCGATTTAGCTACTACACCACCATCAACAGATTCAGAA 587
Query 1319 CCAGAAAAGAAATCGAAACCGAAATCAAAGTCGTCATGGTTCGATAAGTTATCTCCGTCG 1378
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 588 CCAGAAAAGAAATCGAAATCAAAATCAAAGTCGTCATGGTTCGATAAGTTATCTCCATCG 647
Query 1379 AAACTCATCGGATCCATTTGGCGTTCTTCACCGAAAAAATCAACAACCAACAAGAAGAAT 1438
|||||||| ||| |||||||||||||||| |||| ||||||||| |||||||||||||||
Sbjct 648 AAACTCATTGGAACCATTTGGCGTTCTTCGCCGAGAAAATCAACCACCAACAAGAAGAAT 707
Query 1439 CTCAAAAACTGT-AAATCATTTGGTGCTGCTACTTACTCTTCTGGTCGAGAGAGGAACGT 1497
||||||| | | ||||| ||| | ||||| ||||| ||||||||||||||||||| ||
Sbjct 708 CTCAAAAGC-ATCAAATCGTTTAATACTGCTGCTTACACTTCTGGTCGAGAGAGGAAGGT 766
Query 1498 TGATTTCGATGAGTTTTTATCTGATTTGAATGCGTTTCCAGTGGAAGATCAAAGGAAAAT 1557
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 CGATTTCGACGAGTTTTTATCTGATTTGAATGCGTTTCCAGTGGAAGATCAAAGGAAAAT 826
Query 1558 GTTGAAGAAAGCGCTTAAGGAACAACAGAAGATGAGGAAAGAAGCAGCTGAGATCATTAA 1617
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 827 GTTGAAGAAAGCGCTTAAGGAACAGCAGAAGATGAGGAAAGAAGCAGCTGAGATTATCAA 886
Query 1618 AATGGCGAAACATGCATCAGCTAGATTCGATTTTGATGATTGAGAGATTTGGGAA 1672
|||||||||||| |||||||||||||||||||||||||||||||| ||| |||||
Sbjct 887 AATGGCGAAACAGGCATCAGCTAGATTCGATTTTGATGATTGAGA-ATTGGGGAA 940
> Ahg473629 jgi|Araly1|473629|fgenesh2_kg.1__3583__AT1G31470.1
Length=1779
Score = 699 bits (378), Expect = 0.0
Identities = 422/444 (95%), Gaps = 0/444 (0%)
Strand=Plus/Plus
Query 1 TACTAGCGGTATCATCCTCACAACAAACAGCATTGCAGACCGCAACCGCATTAATCGGTC 60
|||||||| |||||||||||||||||| ||||||||| || |||||||| ||||||||||
Sbjct 1336 TACTAGCGATATCATCCTCACAACAAATAGCATTGCAAACGGCAACCGCCTTAATCGGTC 1395
Query 61 TGAGTTCAGGTTTCATATTCGCAGCCGCAGTCTCCATAACATCTGATCTCTTTGGACCCA 120
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1396 TGAGCTCAGGTTTCATATTTGCAGCTGCAGTCTCCATAACATCTGATCTCTTTGGACCCA 1455
Query 121 ATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACATACCAATCGGCTCACTCTTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 ATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACATACCAATCGGCTCACTCTTAT 1515
Query 181 ACGGTTACATCGCTGCCTCCATTTACGAAGCCAACGCAAGCCCCGATATAACACCAATAG 240
||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| |
Sbjct 1516 ACGGTTACATCGCTGCCTCTATTTACGAAGCCAACGCAATCCCCGAGATAACACCAATCG 1575
Query 241 TGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACTTCAAAACGTTTGTGTTTTGGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 TGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACTTCAAAACGTTTGTGTTTTGGG 1635
Query 301 GTTGCTTGTCTATCCTCGGCGTCGTCTCAAGTCTGTCACTGTACATACGAACCAAACCGG 360
||| ||| || ||| |||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 1636 GTTTCTTATCAATCGTCGGCGTCATCTCAAGTCTGTTACTGTACATAAGAACCAAACCGG 1695
Query 361 TTTATCACCGGCTTGAACAAGACAAGGTTTCATTAACATCATCGTACAAGGATCTTGATC 420
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1696 TTTATCACCGGCTTGAACAAGACCAGGTTTCATTAACCTCATCGTACAAGGATCTTGATC 1755
Query 421 CATTGTAAATCAAATCTGTAACAC 444
||||||||||||||| ||||||||
Sbjct 1756 CATTGTAAATCAAATTTGTAACAC 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5