BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31470.1
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473629 jgi|Araly1|473629|fgenesh2_kg.1__3583__AT1G31470.1 2712 0.0
> Ahg473629 jgi|Araly1|473629|fgenesh2_kg.1__3583__AT1G31470.1
Length=1779
Score = 2712 bits (1468), Expect = 0.0
Identities = 1681/1785 (94%), Gaps = 9/1785 (1%)
Strand=Plus/Plus
Query 3 ATCATCTTCCTTTGTATATGAGACCTCGTATCAGAGATGTTTCAGATAAACTCCGACCTA 62
||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1 ATCATCTTCCTTTGTATATGAGACCTCGTATCAGAGATGCATCTGAAAAACTCCGACCTA 60
Query 63 ACCGAGCCTCCTTCGACGACGGAGAAACAAAGTTTCACCGGAAACATC-TTCCGCCTCTC 121
| |||||||||||||||||| ||| |||||||||||||||||| | |||||||||||
Sbjct 61 ATCGAGCCTCCTTCGACGAC---GAAGGAAAGTTTCACCGGAAACA-CATTCCGCCTCTC 116
Query 122 AGGACCATGTTCGGTCGATGGCGGAAATGGACTGTTCTTGTGGCAGCGATCTGGATCCAA 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AGGACCATGTTCGGTCGATGGCGGAAATGGACTGTTCTTGTGGCAGCGATCTGGATCCAA 176
Query 182 GCATCGACGGGAACCAACTTCGATTTCTCAGCTTACTCTTCCCATCTCAAATCAGTTCTC 241
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 177 GCATCCACGGGAACCAACTTCGATTTCTCTGCTTACTCTTCCCATCTCAAATCAGTACTC 236
Query 242 GGAATTTCTCAGGTGAGGTTAAATTACCTCGCCGTGGCTTCTGATTTGGGGAAAGCGTTT 301
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 237 GGAATATCTCAGGTGAGGTTGAATTACCTCGCGGTGGCTTCTGATTTGGGGAAAGCGTTT 296
Query 302 GGATGGTCGTCTGGGATTGCTTTAGGTTATTTCCCTCTCTCCGTCGTTCTTTTCGCTGCG 361
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGATGGTCTTCGGGGATTGCTTTAGGTTATTTCCCTCTCTCCGTCGTTCTTTTCGCTGCG 356
Query 362 GCGGCTATGGGATTTGTTGGTTACGGTGTTCAGTGGCTAGTCATCACCAACATCATCACT 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 357 GCGGCTATGGGATTTGTTGGTTATGGTGTTCAGTGGCTAGTCATCACCAACATCATCACT 416
Query 422 TTGCCTTATTCTCTGGTGTTTCTCTGCTGCTTGTTAGCTGGATTAAGTATCTGTTGGTTC 481
|||| |||||||||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 417 TTGCATTATTCTCTGGTGTTTCTGTGTTGCTTGTTGGCTGGATTAAGCATCTGTTGGTTC 476
Query 482 AACACAGCATGTTTCATCCTCTGCATTCGTCATTTCCCGAACAATCGTGCTCTCGCCTTA 541
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AACACAGCATGTTTTATCCTCTGCATTCGTCATTTCCCGAACAATCGTGCTCTCGCCTTA 536
Query 542 TCTTTAACGGTAAGCTTCAATGGAATCAGTGCAGCATTGTACTCCCTTGCTTTCAATGCA 601
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 TCTTTAACGGTAAGCTTCAATGGAATTAGTGCAGCATTGTACTCCCTTGCTTTCAATGCA 596
Query 602 ATTAACCCGTCGTCGTCCAATCTATACCTTCTGCTGAACTCTCTGGTTCCCCTTGTTGTT 661
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATTAACCCGTCGTCTTCGAATCTATACCTTCTGCTGAACTCTCTGGTTCCCCTTGTTGTC 656
Query 662 TCCTTTGCTGCTCTTTACCCAGTTCTTACTAAACCGTCTCTAGATACTACTCCGGACTAT 721
|| |||||||||||||| ||||||||||||||||| ||| ||||| |||| || ||| ||
Sbjct 657 TCGTTTGCTGCTCTTTATCCAGTTCTTACTAAACCTTCTATAGATCCTACACCAGACAAT 716
Query 722 GATTCCC-GCAGACATGACTCCCATGTGTTTACCATTTTGAATGTTTTAGCTGTCATTAC 780
|| |||| || || ||||||||||||||||||||||||||||||| ||||| || | ||
Sbjct 717 GAATCCCGGC-GAAATGACTCCCATGTGTTTACCATTTTGAATGTCTTAGCCGTTACGAC 775
Query 781 GAGTTTCCACCTTCTCCTATCTAGTTCCAGTACTTCATCAGCGCGTTTGAATTTCATTGG 840
||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 776 AAGTTTTCACCTTCTTCTATCCAGTTCCAGTACTTCATCAGCTCGTTTGAATTTCATTGG 835
Query 841 AGCTGTCGTCCTTCTGGTTTTCCCCTTGTGTGCTCCTCTTCTCGTTTATGCTCGGGATTA 900
|||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 836 AGCTATCGTCCTTCTGGTTTTCCCCTTGTGTGCTCCTCTTCTCGTCTATGCTCGAGATTA 895
Query 901 CTTTCTTCCGGTCATTAACGCTCGTTTAAACCATGAAAGCTCTGGCTATGTTATGCTTAA 960
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CTTTCTTCCTGTTATTAATGCTCGTTTAAACCATGAAAGCTCTGGCTATGTTATGCTTAA 955
Query 961 CATAGATGAGCTCAAGAACCAAAAAACGTCCGTTTCCAGCAAAACCGGGTATGAAC-ATA 1019
||||||||||||||||| ||||||| |||| ||||||||||||| |||||||||| ||
Sbjct 956 CATAGATGAGCTCAAGAGCCAAAAAGCGTCTGTTTCCAGCAAAATTGGGTATGAACAAT- 1014
Query 1020 TGGGGACTGCTAAGGAAGGGAACACAGTGAGGCTCGGTGATGAACATTCGTTTCGATTGC 1079
|||||||||||||||||||||||| ||||| ||||||||||||||| || |||| |||||
Sbjct 1015 TGGGGACTGCTAAGGAAGGGAACATAGTGATGCTCGGTGATGAACACTCCTTTCAATTGC 1074
Query 1080 TCATAAGTAGATTGGAGTTTTGGTTATACTACATTGCGTATTTCTGTGGTGGCACAATTG 1139
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1075 TCATAAGTAGATTGGAATTTTGGTTATACTACATTGCGTATTTCTGTGGTGGCACTATTG 1134
Query 1140 GCCTTGTTTACAGCAACAATTTGGGACAGATTGCTCAGTCTTTGGGACAAAACTCTACTA 1199
||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1135 GCCTTGTGTATAGCAACAATTTGGGACAGATTGCTCAGTCTTTAGGACAAAACTCTACAA 1194
Query 1200 CACTAGTCACAATCTACTCTTCATTCTCCTTCTTCGGTAGATTGCTCTCTGCCGCACCAG 1259
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1195 CCCTCGTCACAATCTACTCTTCATTCTCCTTCTTCGGTCGATTGCTCTCTGCCGCACCAG 1254
Query 1260 ATTTTATGCACAAGAGATTTCGTTTAACAAGAACCGGCTGGTTTGCAATCGCACTCTTAC 1319
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1255 ATTTTATGCACAAGAGATTTCGTTTGACAAGAACCGGCTGGTTTGCAATTGCACTCTTAC 1314
Query 1320 CAACTCCAATCGCTTTCTTTTTACTAGCGGTATCATCCTCACAACAAACAGCATTGCAGA 1379
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 1315 CAACTCCAATCGCTTTCTTTTTACTAGCGATATCATCCTCACAACAAATAGCATTGCAAA 1374
Query 1380 CCGCAACCGCATTAATCGGTCTGAGTTCAGGTTTCATATTCGCAGCCGCAGTCTCCATAA 1439
| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 1375 CGGCAACCGCCTTAATCGGTCTGAGCTCAGGTTTCATATTTGCAGCTGCAGTCTCCATAA 1434
Query 1440 CATCTGATCTCTTTGGACCCAATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CATCTGATCTCTTTGGACCCAATAGCGTAGGTGTTAACCACAACATTCTCATCACAAACA 1494
Query 1500 TACCAATCGGCTCACTCTTATACGGTTACATCGCTGCCTCCATTTACGAAGCCAACGCAA 1559
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1495 TACCAATCGGCTCACTCTTATACGGTTACATCGCTGCCTCTATTTACGAAGCCAACGCAA 1554
Query 1560 GCCCCGATATAACACCAATAGTGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACT 1619
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TCCCCGAGATAACACCAATCGTGTCTGACTCAATCGTTTGCATCGGAAGAGATTGCTACT 1614
Query 1620 TCAAAACGTTTGTGTTTTGGGGTTGCTTGTCTATCCTCGGCGTCGTCTCAAGTCTGTCAC 1679
|||||||||||||||||||||||| ||| || ||| |||||||| |||||||||||| ||
Sbjct 1615 TCAAAACGTTTGTGTTTTGGGGTTTCTTATCAATCGTCGGCGTCATCTCAAGTCTGTTAC 1674
Query 1680 TGTACATACGAACCAAACCGGTTTATCACCGGCTTGAACAAGACAAGGTTTCATTAACAT 1739
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1675 TGTACATAAGAACCAAACCGGTTTATCACCGGCTTGAACAAGACCAGGTTTCATTAACCT 1734
Query 1740 CATCGTACAAGGATCTTGATCCATTGTAAATCAAATCTGTAACAC 1784
|||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1735 CATCGTACAAGGATCTTGATCCATTGTAAATCAAATTTGTAACAC 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67076921445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5