BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31490.1
Length=2067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922628 jgi|Araly1|922628|scaffold_103909.1 2146 0.0
Ahg473628 jgi|Araly1|473628|fgenesh2_kg.1__3582__AT1G31480.1 717 0.0
> Ahg922628 jgi|Araly1|922628|scaffold_103909.1
Length=1375
Score = 2146 bits (1162), Expect = 0.0
Identities = 1304/1374 (95%), Gaps = 4/1374 (0%)
Strand=Plus/Plus
Query 197 TACCTACTGGTAAACTGAAAATGAAAATCTTTGATGTTAGTTTCACCGGAGAGTTCATAG 256
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 TACCTACTGGTAAACTGAAAATGAAAATCTTTGATGTGAGTTTCACCGGAGAGTTCATAG 60
Query 257 TCAAAGCTTCTGGCGACCAACCGGAGAAAGTTAATAGCCTTAATCTCTCAAATTTTGACC 316
|||||||||| |||||||||| ||||||||||| |||||||| |||||||||| ||||||
Sbjct 61 TCAAAGCTTCCGGCGACCAACTGGAGAAAGTTAGTAGCCTTACTCTCTCAAATCTTGACC 120
Query 317 TTCTTTCCGGCCGTTTTCCGGTGACCTACTTTTACTTCTACCCCAAGCAACCACAATTAT 376
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TTCTTTCCGGCCGTTTTCCGGTGACCTACTTTTACTTCTACCCTAAGCAACCACAATTAT 180
Query 377 CCTTTGAAACAATCGTCAAATCCCTCCAAAGCTCTCTCTCTCAAACTCTCAGCTACTTCT 436
||||||| |||||||||||||| || |||||||||| ||| ||||||| | ||||||||
Sbjct 181 CCTTTGAGTCAATCGTCAAATCCTTCAAAAGCTCTCTATCTGAAACTCTTACCTACTTCT 240
Query 437 ATCCTTTCGCGGGTCAGATTGTTCCCAATGAAACATCACAAGAAGAGCCTATGATCATCT 496
||||||||||||||||||||||| |||| ||||| || ||||| ||||||||||||||||
Sbjct 241 ATCCTTTCGCGGGTCAGATTGTTACCAACGAAACCTCTCAAGAGGAGCCTATGATCATCT 300
Query 497 GTAACAACAATGGAGCTTTGTTCGTTGAAGCCCGAGCTCATGTCGATCTCAAGAGTTTAG 556
|||||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||| |
Sbjct 301 GTAACAACAATGGAGCTTTGCTCGTTGAAGCACGAGCTCATATCGATTTCAAGAGTTTGG 360
Query 557 ATTTTTACAATCTTGATGCGTTTCTCCAATCAAAGCTGG-TACAGGTTAACCCGGATTTC 615
||||||||||||| |||| |||||||||||||||||||| | || |||||||||||||||
Sbjct 361 ATTTTTACAATCTCGATGTGTTTCTCCAATCAAAGCTGGTTCCA-GTTAACCCGGATTTC 419
Query 616 TCTTTACAGATTCAAGCGACAGAGTTCGAATGTGGAGGCCTCGCTTTAACATTCACGTTT 675
||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 420 GCTTTACAGATTCAAGTGACAGAGTTCGAATGCGGAGGCCTCGCTATAACATTCACGTTT 479
Query 676 GATCATGCTTTAGGAGACGCGAGCTCCTTCGGGAAATTCCTCACTTTGTGGTCAGAGATA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATCATGCTTTAGGAGACGCGAGCTCCTTCGGGAAATTCCTCACTTTGTGGTCAGAGATA 539
Query 736 TCGAGAAATAAGCCGGTTTCTTGTGTACCAGATCA-CAGGAGAAACCTCCTCCGGGCACG 794
||||||||| ||| ||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 540 TCGAGAAATCAGCAGGTTTCTTGTGTACCAGATCACCA-GAGAAATCTCCTCCGGGCACG 598
Query 795 CTCTCCTCCACGTTATGACCCTCACTTGGACAAAACTTTCATAAAATGCAGTGAGGAAGA 854
|||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||
Sbjct 599 GTCTCCTCCACGTTACCACCCTCACTTGGACAAAAAATTCGTAAAATGCAGCAAGGAAGA 658
Query 855 CATTAAGAACATACCGATGTCTAAAACGCTCATCAAGCGTCTCTACCACATCGGTGCTTC 914
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 CATTAAGAACATACCGATGTCTAAAACGCTCATCAAGCGTCTCTACCACATCGATGCTTC 718
Query 915 GAGCCTAGACGCGTTGCAAGCTCTAGCTACTGTAAACGGAGAGAGCAGGACAAAGATTGA 974
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 719 GAGCATAGCCGCGTTGCAAGATCTAGCTACTGTAAACGGAGAGAGCAGGACAAAGATTGA 778
Query 975 AGCTTTCTCCGCTTATGTGTGGAAGAAAATGGTGGATTCTATAGAGAGCGGTCATAAAAC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCTTTCTCCGCTTATGTGTGGAAGAAAATGGTGGATTCTATAGAGAGCGGTCATAAAAC 838
Query 1035 CTGCAAGATGGGATGGCTTGTCGACGGTAGAGGAAGACTTGAGACCGTTACCTCGAGCTA 1094
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 CTGCAAGATGGGATGGCTTGTCGACGGTAGAGGAAGACTCGAGACCGTTACCTCGAGCTA 898
Query 1095 CATAGGAAACGTATTGTCTATAGCTGTAGGTGAAGCCAGTATCGAAAATCTGAAGAAAAA 1154
|||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||
Sbjct 899 CATAGGAAACGTCTTGTCTGTAGCTGTAGGTGAAGCCAGTATCGAGAATCTGAAGCAAAA 958
Query 1155 CCATGTGTCAGATATAGCAAACATAGTGCATAAATCGATAACAGAAGTGACAAACGATAC 1214
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 CCATGTATCAGAGATAGCAAACATAGTGCATAAATCGATAACAGAAGTGACAAACAATAC 1018
Query 1215 TCATTTCACAGATTTGATAGATTGGATCGAGAGTCACCGACCTGGACTGATGTTGGCTCG 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCATTTCACAGATTTGATAGATTGGATCGAGAGTCACCGACCTGGACTGATGTTGGCTCG 1078
Query 1275 GGTGGTTCTCGGACAAGAAGGACCAGCTTTGGTCTTGTCTTCAGGACGACGGTTCCCTGT 1334
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGTGGTCCTCGGACAAGAAGGACCAGCTTTGGTCTTGTCTTCAGGACGACGGTTCCCTGT 1138
Query 1335 GGCTGAATTGGATTTTGGATTTGGTGCTCCTTTCCTAGGAACTGTATGTTCAACGGTTGA 1394
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 GGCTGAATTGGATTTTGGGTTTGGTGCTCCTTTCCTAGGAACTGTATGTTCAACCATTGA 1198
Query 1395 GAAAATAGGAGTTGGTTACCTGAACCAGCGACCTAGCGCCTGCAATGATGGCTCGTGGTC 1454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAAAATAGGAGTTGGTTACCTGAACCAGCGACCTAGCGCCTGCAATGATGGCTCGTGGTC 1258
Query 1455 GGTTTCTGCTATTGTGTGGCCTGAACTCGCTACAGCTTTAGAGTCTGACTCGGTGTTTCA 1514
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 1259 GGTTTCTGCTATTGTGTGGCCTGAACTCACTGCAGCTTTAGAGTCTGACTCGGTTTTTCA 1318
Query 1515 GCCAATGTCTGCTAAACATCTTCAACTCCAGACCTGAAAACAAGCAAAGCTAAC 1568
|||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1319 GCCAATGTCTGCTAAACATCTTCAACTCCAGACCTGAAAAAAAGGTCAGCTAAC 1372
> Ahg473628 jgi|Araly1|473628|fgenesh2_kg.1__3582__AT1G31480.1
Length=3137
Score = 717 bits (388), Expect = 0.0
Identities = 414/427 (97%), Gaps = 0/427 (0%)
Strand=Plus/Minus
Query 1594 AAGCTTTCATTGTTTTGCTTTATTATATGTAAAATTATGGTTACAATGTGGCAAAACCAT 1653
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3137 AAGCTTTCATCGTTTTGCTTTATTATCTGTAAAATTATGGTTACAATGTGGCAAAACCAT 3078
Query 1654 GTCGGAGTTTTTACTTTTCACATTTTCTACACTAGATGTTACTTCTGCACAGGAAACAAA 1713
|| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 3077 GTAGGAGTTTTTCCTTTTCACATTTTCTGCACTATATGTTACTTCTGCACAGGAAACAAA 3018
Query 1714 AACAAAATCAGGGAGCTTTCACCGGATATACGATATAAACCTACGGTCAAAGTCTTAAGG 1773
| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 3017 ATCAAAATCAGGGAGCTTTCACCGGATTTACGATATAAACCTATGGTCAAAGTCTTAAGG 2958
Query 1774 CTTCTTCAAATATTTCTTGGCTTCTGCAGAGAAGCTTCTAGTGATTTGTTTGTCGGAGAA 1833
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2957 CTTCTTCAAATATTTCTTGGCTTCTGCGGAGAAGCTTCTAGCGATTTGTTTGTCGGAGAA 2898
Query 1834 TGTTAAAGGAAGCTCTTCATCATCATAATCAGCCTCTCTTCTGTCTATCCAGCTATGAGG 1893
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2897 TGTTAAAGGAAGCTCTTCATCATCATAATCAGTCTCTCTTCTGTCTATCCAGCTATGAGG 2838
Query 1894 TCTACTTGAGTCTTTTGGACTATCATCTCCTTCGGTGGATTCCGTGGGCGAGTTTGGTCC 1953
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2837 TCTACTTGAGTCTTTTGGACTATCATCTCCTTCGGTGGATTCCGTGGGTGAGTTTGGTCC 2778
Query 1954 GTCTGGTAACTCGCGATACAAGTGTTTAATTATGAAAAGAGCAGTATCTTGATCTCTCCA 2013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2777 GTCTGGTAACTCGCGATACAAGTGTTTAATTATGAAAAGAGCAGTATCTTGATCTCTCCA 2718
Query 2014 ATAGTTC 2020
|||||||
Sbjct 2717 ATAGTTC 2711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77742190045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5