BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31500.4
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473625 jgi|Araly1|473625|fgenesh2_kg.1__3579__AT1G31500.4 2152 0.0
> Ahg473625 jgi|Araly1|473625|fgenesh2_kg.1__3579__AT1G31500.4
Length=1469
Score = 2152 bits (1165), Expect = 0.0
Identities = 1366/1460 (94%), Gaps = 25/1460 (2%)
Strand=Plus/Plus
Query 1 AAAGCCAAATTGGGTTAAGTCAATTGTTGTCACTATAGATGTTTAGTTCTACAACTCTGC 60
|||||||||||||||||||||||||| | |||| | |||||||||| || | | | |
Sbjct 1 AAAGCCAAATTGGGTTAAGTCAATTGCTCTCAC--T-GATGTTTAGTACT-CTGC-AT-C 54
Query 61 ATCATCTTCCTCGTCCGAATCTTCTTCTTCCCAGGAAAGTTATTTCGAGAAGAATGAGTA 120
||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||
Sbjct 55 ATCATCTTCCTCGTCCGAA---TCTTCTTCCCAGGAAAATTATTTCGAAAAGAATGAGTA 111
Query 121 CGAATCCTGCAATTGAACCAAAAGTTCGCAAATTTGAATCTGTTGAAGGAGTTGATATTG 180
|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||
Sbjct 112 CGAATCCTGCAATTGAACCAAAAGTTCGAAAATTCGAATCTGTTGAAGGAGCTGATATTG 171
Query 181 GTTCAAGAAATAAATCCGATGGtttttttGCT-ATTCCTCTTTACTTATCAAAGCTTGTG 239
||||||||| || ||| |||||||| |||||| ||| || ||||||||||||||||||||
Sbjct 172 GTTCAAGAAGTATATCTGATGGTTTGTTTGCTAATTTCTATTTACTTATCAAAGCTTGTG 231
Query 240 GCTTTATATAACTGTATAAGTTTAAGTAGAA---T--T--GG----T-ACTAGTAATGAG 287
||| |||| || | | || |||||||||||| | | || | ||||||||||
Sbjct 232 GCTATATA-AATTTTCTAGGTTTAAGTAGAATGGTAATGAGGATTTTGTGTAGTAATGAG 290
Query 288 AATTTTGTGTTTTCAGGTATCAGATTCCGTCTTGTTTCATATAACATATTAGCTCAGGTT 347
|||||||||||| ||||||||| ||||||||| ||||| |||||||||||||||||||||
Sbjct 291 AATTTTGTGTTTCCAGGTATCAAATTCCGTCTCGTTTCGTATAACATATTAGCTCAGGTT 350
Query 348 TATGTGAAGAGTGCACTTCTCCCACACTCTCCACCTGCCTGTCTCAAATGGAAAGCTCGT 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TATGTGAAGAGTGCACTTCTCCCACACTCTCCACCTGCCTGTCTCAAATGGAAAGCTCGT 410
Query 408 TCACATGCAATTCTCAGCGTTCTCAAAAATCTCCAGGCTGATTTCTTTTGTCTGCAGGAA 467
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 411 TCACATGCAATTCTAAGCGTTCTCAAAAATCTCAAGGCTGATTTCTTTTGTCTGCAGGAA 470
Query 468 GTAGATGAGTACGATAGCTTTTACAGAAATAACATGGACTCTCTGGGATATTCTGGGATT 527
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 471 GTAGATGAGTACGATAGCTTTTACAGAAATAACATGGAGTCTCTGGGCTATTCTGGGATT 530
Query 528 TATATTCAGAGAACCGGCCAGAGGAAGCGTGATGGTTGTGCAATCTTCTACAAGCCAAGC 587
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TATATTCAGAGAACCGGACAGAGGAAGCGTGATGGTTGTGCAATCTTCTACAAGCCAAGC 590
Query 588 TGTGCAGAGTTAGTCACAAAGGAACGGATCGAATATAATGATCTTGTGGACTCAATAAAA 647
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGTGCAGAGTTGGTCACAAAGGAACGGATCGAATATAATGATCTTGTGGACTCAATAAAG 650
Query 648 GCAGATAGTGTTTCCTGCAGCGAACAGAAGATTGAGACATCCAACGAAGGAAAAGATTCT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GCAGATAGTGTTTCCTGCAGCGAACAGAAGATTGAGACATCCAACGAAGGAAAAGATTCT 710
Query 708 CGAAAAGACAGTCGTGACCTTAATGATCCACTAGTGAGACTAAAACGTGATTGCGTTGGA 767
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 711 CGAAAAGATAGTCGTGACCTTAATGATCCACTTGTGAGACTAAAACGCGATTGCGTTGGA 770
Query 768 ATAATGGCTGCTTTTAGGATCAACAAGCCGTTTCAGCATATCGTTATCGTGGCAAACACA 827
||||| ||||||||||| ||||||||||||||||| || || ||||||||||||||||||
Sbjct 771 ATAATTGCTGCTTTTAGAATCAACAAGCCGTTTCATCACATTGTTATCGTGGCAAACACA 830
Query 828 CATCTTTACTGGGACCCTGAATTGGCTGATGTCAAGCTTGCTCAAGCCAAGTATCTACTG 887
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 CATCTTTACTGGGACCCGGAATTGGCTGATGTCAAGCTTGCTCAAGCCAAGTACCTACTA 890
Query 888 TCACGACTAGCTCAGTTCAAAACACTAATATCAGATGAATTTGAGTGCACACCTTCATTG 947
||||||||||||||||||||||| |||||||| |||||||| || |||||||| ||||||
Sbjct 891 TCACGACTAGCTCAGTTCAAAACGCTAATATCGGATGAATTCGAATGCACACCATCATTG 950
Query 948 CTACTAGCTGGCGACTTCAATTCAATTCCTGGGGATATGGTTTATAGTTACCTAGTATCG 1007
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 951 CTTCTAGCTGGCGACTTCAATTCAATTCCTGGGGATATGGTTTATAATTACCTAGTATCG 1010
Query 1008 GGTAATGCTAAACCCACAGAGACCATAGAAGAAGAAGAAGCTCCAGTTCCTCTGTCTAGT 1067
||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1011 GGTAATGCTAAACCCGCAGAGACCACAGAAGAAGAAGAAGCTCCAGTTCCGCTGTCTAGT 1070
Query 1068 GTCTATGAAGTCACAAGAGGAGAGCCTAAGTTCACAAATTGCACTCCTGGCTTCACAAAC 1127
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1071 GTCTATGAAGTCACAAGAGGAGAGCCTAAATTCACAAATTGCACTCCTGGCTTCACAAAC 1130
Query 1128 ACACTTGACTACATCTTCATCTCTCCTTCAGACTTCATTAAACCTGTGAGTATCCTTCAA 1187
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1131 ACACTTGACTACATCTTCATCTCTCCTTCAGACTTCATCAAACCTGTGAGTATCCTCCAA 1190
Query 1188 CTACCTGAGCCGGATTCTCCAGATGTTGTCGGTTTCTTACCGAATCATCATCACCCGAGT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CTACCTGAGCCGGATTCTCCAGATGTTGTCGGTTTCTTACCGAATCATCATCACCCGAGT 1250
Query 1248 GATCATTTACCTATAGGAGCTGAGTTTGAGATTCGTCGGGAATAGGAAGTTTCGTTCTTT 1307
||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 1251 GATCATTTACCGATAGGAGCTGAGTTTGAGATTCGTCGGGAATAGAAAGTTTTGTTTTTT 1310
Query 1308 AGAAAGTTTTGTCGCATAACTCCATTGTTTCAGCATTTGAATATGGTTCTTGTAG-AAAT 1366
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1311 AGAAAGTTTTGTTGCATAACTCCATTGTTTTAGTATTTGAATATGGTTCTTGTAGCAAAT 1370
Query 1367 CATGAAGCAGTGAATCATACACACACAACACAAAGTATTAAAGGACTTGG-ATCATTTTT 1425
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1371 CGTGAAGCAGTGAATCATACACACACAACACAAAGTATTAAAGGACTTGGGATCATTTTA 1430
Query 1426 GTCTCAATAAACTCGAAATT 1445
|||||| |||||||||||||
Sbjct 1431 GTCTCAGTAAACTCGAAATT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5