BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31530.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313975 jgi|Araly1|313975|fgenesh1_pm.C_scaffold_1002755 279 2e-74
> Ahg313975 jgi|Araly1|313975|fgenesh1_pm.C_scaffold_1002755
Length=873
Score = 279 bits (151), Expect = 2e-74
Identities = 194/215 (90%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 637 AGTGTGTATGAATTTACGAAAGGAGAGCCAAGGTTCAC-AAATAATGTGCCAGGGTTTGC 695
|||| ||||| ||| |||||||||||||||| |||||| |||| |||||||||| |||||
Sbjct 652 AGTGCGTATGGATTCACGAAAGGAGAGCCAAAGTTCACAAAAT-ATGTGCCAGGATTTGC 710
Query 696 TGAAACACTCGATTACATGTTCTACACGCATTCTGAAATTATTTCTCCTGTGAAGCTCCT 755
|||||||||||||||| |||||| ||||| |||||| ||||||| |||||||||||| |
Sbjct 711 TGAAACACTCGATTACGTGTTCTTCACGCCTTCTGATTTTATTTCACCTGTGAAGCTCTT 770
Query 756 GGATTCGCCGGACGAAGTCGATTTCTTACCCAATGAAATTCATCCGAGTGATCATTTACC 815
|||||| || |||| ||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 771 GGATTCACCCGACGTAGTCGATTTCTTACCTAATAAAAGTCATCCGAGTGATCATTTACC 830
Query 816 CATCGGCGTTGAGTTTGAGATCAACCGAAACATAT 850
|||||||||||||||||||||||||||||| ||||
Sbjct 831 CATCGGCGTTGAGTTTGAGATCAACCGAAAAATAT 865
Score = 239 bits (129), Expect = 3e-62
Identities = 212/249 (85%), Gaps = 18/249 (7%)
Strand=Plus/Plus
Query 19 ATGTAT-G-T-CTCTCCTCCAGAGT-CTATCCTGTGGGAGAAACGTTCGAAGGCGATTCT 74
|||||| | | |||||||||||| | |||||||||||| || |||||||||||||||||
Sbjct 1 ATGTATAGTTACTCTCCTCCAGA-TAGTATCCTGTGGGATAACCGTTCGAAGGCGATTCT 59
Query 75 TGATAATATAAAGAATTTTGAAGCTGATTTCATCTGTCTACAAGAAGTAGACGAGTACCA 134
||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 60 TGATAATTTAAAGAATTTTGAAGCTGATTTCATCTGTCTACAGGAAGTAGACGAATAC-A 118
Query 135 T-AGTTTTTTCGATAGAAACATGGAAGCTCAAGGATACTCTGGAATTCCTATTGAAA-AT 192
| |||||||| |||||||||||||| ||||| |||||| |||||||| | || || |
Sbjct 119 TTAGTTTTTTTGATAGAAACATGGAGGCTCATGGATACACTGGAATTTATTTTCCAAGAG 178
Query 193 AAAGAAGGCTAT----GA-ATG-C-G--CAATCTTTTTCAAGCCCAAATTTGCAGAGTTC 243
| ||||||||| || | | | | |||||||||||||||||||||||||||||||
Sbjct 179 GA-GAAGGCTATAAAAGAGACGGCTGTGCAATCTTTTTCAAGCCCAAATTTGCAGAGTTG 237
Query 244 ATTACATAC 252
|||||||||
Sbjct 238 ATTACATAC 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5