BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31550.2
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121 1751 0.0
Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945 1170 0.0
Ahg900444 jgi|Araly1|900444|Al_scaffold_0004_1094 928 0.0
Ahg473078 jgi|Araly1|473078|fgenesh2_kg.1__3032__AT1G28580.1 917 0.0
> Ahg336556 jgi|Araly1|336556|fgenesh1_pg.C_scaffold_1003121
Length=1185
Score = 1751 bits (948), Expect = 0.0
Identities = 1109/1188 (93%), Gaps = 6/1188 (1%)
Strand=Plus/Plus
Query 96 ATGGCGTCGCTAGATTCTCATGTGTTGATGAAACTAGGTAGCCTCTTTTTATCTACTCTT 155
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1 ATGGCGTCGCTAGATTCTCATGTGTTGATGAAACTAGCTAGCCTCTTTTTATCTTCTCTT 60
Query 156 TTTGTTTCTATC-GTAAGCTCGGAATCGCAGTGCCGGAACTTCGAGTCGATCATCAGTTT 214
||||| ||||| || ||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 61 TTTGTCACTATCGGT-AGCTCGGAATCACAGTGTCAGAACTTCGAGTCGATCATCAGTTT 119
Query 215 CGGCGATTCGATTGCCGACACTGGAAACTTGCTAGGTCTCTCAGATCATAACAATCTTCC 274
|||||||| ||||||||||| ||||||||||| ||||||| |||| | ||||||||||
Sbjct 120 TGGCGATTCAATTGCCGACACCGGAAACTTGCTCCGTCTCTCGGATCGTTACAATCTTCC 179
Query 275 TATGAGCGCGTTTCCACCGTACGGAGAAACTTTCTTCCACCACCCAACCGGTCGTTTCTC 334
||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 180 TATGAGCGCATTTCCACCGTACGGAGAGACTTTCTTCCACCATCCAACCGGTCGTTTCTC 239
Query 335 TGACGGTCGCCTCATCATTGACTTCATCGCTGAATTTTTGGGGCTTCCTTATGTGCCTCC 394
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 CGACGGCCGCCTCATTATTGACTTCATCGCTGAATTTTTGGGGCTTCCTTATGTTCCTCC 299
Query 395 TTACTTCGGATCTACAAATGGAAACTTTGAGAAAGGAGTTAATTTTGCCGTAGCCTCAGC 454
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTACTTCGGATCTATAAATGGAAACTTTGAGAAAGGAGTTAATTTTGCCGTAGCCTCAGC 359
Query 455 AACTGCATTGGAAAGTTCTTTTCTAGAAGAGAAAGGATACCATTGTCCTCACAACT-TCA 513
||| ||||||||||| || ||||||||||||| ||||||||||||||||||||| | | |
Sbjct 360 AACGGCATTGGAAAGCTCATTTCTAGAAGAGAGAGGATACCATTGTCCTCACAA-TATTA 418
Query 514 GTTTAGGAGTTCAGCTTAAGATCTTCAAGCAGAGCTTACCAAATCTATGTGGCTTACCAT 573
|||||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct 419 GTTTAGGAATTCAGCTTAAGAGCTTCAAGGAGAGTTTACCAAATCTATGTGGCTTACCAT 478
Query 574 CAGATTGTAGAGATATGATTGGAAATGCTTTGATTCTCATGGGAGAGATTGGAGCTAATG 633
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 479 CAGATTGTAGAGAAATGATTGGAAATGCTTTGATTCTCATGGGAGAGATTGGAGCGAACG 538
Query 634 ATTACAATTTCCCATTCTTCCAACTCAGACCATTGGACGAGGTCAAAGAGCTTGTTCCGT 693
|||| ||||||||||| ||| |||||||||| || ||| ||||||||||||| |||||||
Sbjct 539 ATTATAATTTCCCATTGTTCGAACTCAGACCCTTAGACAAGGTCAAAGAGCTCGTTCCGT 598
Query 694 TGGTGATTAGTACTATTTCTTCTGCGATTACGGAGTTGATTGGTATGGGAGGAAGAACAT 753
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 599 TGGTGATTAGTACTATTTCTTCAGCGATTACGGATTTGATTGGTATGGGGGGAAGAACAT 658
Query 754 TTCTGGTGCCCGGAGGGTTCCCTCTCGGATGCTCAGTAGCATTTTTGACATTACACCAAA 813
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 TTATGGTGCCCGGCGGGTTCCCTCTCGGATGCTCAGTAGCATTTTTGACATTATACCAAA 718
Query 814 CATCAAACATGGAAGAATATGATCCTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTG 873
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 719 CATCAAACATGGAAGAATATGATCCTTTAACAGGATGTTTGAAATGGCTAAACAAGTTTG 778
Query 874 GAGAATACCACAGTGAGCAGCTTCAGGAAGAACTCAACAGACTCAGGAAGCTTAACCCTC 933
||||||||||||| ||||||||||||| ||||||||| ||||||||||| || |||||||
Sbjct 779 GAGAATACCACAGCGAGCAGCTTCAGGCAGAACTCAAGAGACTCAGGAAACTCAACCCTC 838
Query 934 ACGTCAACATCATATATGCTGACTACTACAATGCTTCATTGCGCCTTGGCCGAGAACCAA 993
| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 839 ATGTCAACATCATATATGCTGACTACTACAATGCTTCGTTGCGCCTTGGCCAAGAACCAA 898
Query 994 GTAAATACGGATTCATAAACAGACACTTGTCAGCTTGTTGCGGTGTAGGAGGGCCGTACA 1053
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 899 CCAAATACGGATTCATAAACAGACACTTGTCAGCTTGTTGCGGTGTAGGAGGACCGTACA 958
Query 1054 ACTTCAACTTAAGTAGAAGTTGTGGGAGTGTAGGAGTGGAAGCTTGTAGTGATCCTTCAA 1113
|||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 959 ACTTCAACTTCAGTAGAAGTTGTGGGAGTGTAGGAGTGGAATCTTGTAATGATCCTTCAA 1018
Query 1114 AGTATGTGGCCTGGGATGGCCTTCATATGACTGAGGCTGCACACAAATCGATGGCTGATG 1173
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1019 AGTATGTGGCCTGGGATGGCCTTCATATGACTGAGGCTGCATATAAATCGATGGCTGATG 1078
Query 1174 GATTAGTCAAAGGACCATATGCGATTCCTCCTTTCGATTGGTCATGTCTCAGCTC-AATG 1232
||||| |||| ||| |||||||||||||||||||| ||||||||||||| ||||| || |
Sbjct 1079 GATTACTCAACGGAACATATGCGATTCCTCCTTTCAATTGGTCATGTCTTAGCTCCAA-G 1137
Query 1233 ATTAAGAAGAAGGAAGTCGTTGGAAACACAATATTCTTTGATGAATAG 1280
|||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct 1138 ATTAAGAAGAAGGAAGTCATTAGAAATACAATATTCTTTGATGAATAG 1185
> Ahg912691 jgi|Araly1|912691|Al_scaffold_0001_2945
Length=2427
Score = 1170 bits (633), Expect = 0.0
Identities = 983/1147 (86%), Gaps = 44/1147 (4%)
Strand=Plus/Plus
Query 139 TCTTTTTATCTACTCTTTTTGTTTCTATCGTAAGCTCGGAATCGCAGTGCCGGAACTTCG 198
||||||| |||||||| |||| ||||||| ||||||||| ||| ||||||||| |||
Sbjct 30 TCTTTTT-TCTACTCTACTTGTCACTATCGTGAGCTCGGAAACGCCGTGCCGGAATTTCA 88
Query 199 AGTCGATCATCAGTTTCGGCGATTCGATTGCCGACACTGGAAACTTGCTAGGTCTCTC-A 257
||||||||||||||||||| ||||||||||||||||| || |||||| | |||||||| |
Sbjct 89 AGTCGATCATCAGTTTCGGTGATTCGATTGCCGACACCGGGAACTTGGTCGGTCTCTCTA 148
Query 258 GATCATAACAATCTTCCTATGAGC-GCGTTTCCACCGTACGGAGAAACTTTCTTCCACCA 316
||| ||||||||||||| ||| | ||||||||||| |||||||||||||||||||||||
Sbjct 149 -ATCGTAACAATCTTCCTGTGA-CTGCGTTTCCACCATACGGAGAAACTTTCTTCCACCA 206
Query 317 CCCAACCGGTCGTTTCT-CTGACGGTCGCCTCATCATTGACTTCATCGCTGAATTTTTGG 375
|||||||| |||| || | ||||| ||| ||||||| ||||| |||||||||||| |||
Sbjct 207 ACCAACCGGCCGTTCCTGC-GACGGCCGCATCATCATGGACTTTATCGCTGAATTTGTGG 265
Query 376 GGCTTCCTTATGTGCCTCCTTACTTCGGATCTACAAATGGAAACTTTGAGAAAGGAGTTA 435
| ||||||||||||||||||||||| ||||||| ||||||||||||||| || || ||||
Sbjct 266 GCCTTCCTTATGTGCCTCCTTACTTTGGATCTAAAAATGGAAACTTTGATAAGGGCGTTA 325
Query 436 ATTTTGCCGTAGCCT-CAGCAACTGCATTGGAAAGTTCTTTTCT-A-GAAGAGAAAGG-A 491
|||| || |||| || |||||| ||| |||||||||| ||||| | |||||| ||| |
Sbjct 326 ATTTCGCGGTAG-CTGGAGCAACGGCACTGGAAAGTTCCTTTCTCATGAAGAG--AGGAA 382
Query 492 TACCATTGTC-CTCA-CAAC-TTCAGTTTAGGAGTTCAGCTTAAGATCTTCAAGCAGAGC 548
| || | | | || |||| || |||||||||||||||||||||| ||||||| | ||
Sbjct 383 T-TCA-T-CCACACACCAACGTT-AGTTTAGGAGTTCAGCTTAAGAGCTTCAAGAAAAGT 438
Query 549 TTACCAAATCTATGTGGCT-TACCATCAGATTGTAGAGATATGATTGGAAATGCTTTGAT 607
||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTACCAAATATATGTGGCTCT-CCATCAGATTGTAGAGATATGATTGGAAATGCTTTGAT 497
Query 608 TCTCATGGGAGAGATTGGAGCTAATGATTACAATTTCCCATTCTTCCAACTCAGACC-AT 666
|||||||||||||||||||| |||||||| ||||||||||||||| ||| || ||| ||
Sbjct 498 TCTCATGGGAGAGATTGGAGGGAATGATTATAATTTCCCATTCTTCGAACGCAAACCCAT 557
Query 667 TGGACGAGGTCAAAGAGCTTGTTCCGTTGGTGATTAG-TACTATTTCTTCTGCGATTACG 725
| || || |||||||| |||||||| ||||| | ||||||||||||||| || |||
Sbjct 558 CA-AGGAAGTTAAAGAGCTGGTTCCGTTTGTGATC-GCTACTATTTCTTCTGCAATCACG 615
Query 726 GAGTTGATTGGTATGGGAGGAAGAACATTTCTGGTGCCCGGAGGGTTCCCTCTCGGATGC 785
||||||||||||||||| |||| ||| ||||| |||||||||| ||||||| ||||||||
Sbjct 616 GAGTTGATTGGTATGGGGGGAAAAACCTTTCTAGTGCCCGGAGAGTTCCCTATCGGATGC 675
Query 786 TCAGTAG-CATTTTTGACATTACACCAAACATCAAACATGGAAGAATATGATCCTTTAAC 844
||||||| | | |||||||||| | ||||||||||||| ||||||||| |||||||||||
Sbjct 676 TCAGTAGTC-TATTTGACATTATATCAAACATCAAACAAGGAAGAATACGATCCTTTAAC 734
Query 845 AGGATGTTTGAAATGGCTGAACAAGTTTGGAGAATACCACAGTGAGCAGCTTCAGGAAG- 903
|||||||||||||||||||||||||||||| ||||||||||| |||| ||| || | |
Sbjct 735 AGGATGTTTGAAATGGCTGAACAAGTTTGGCGAATACCACAGCCAGCAACTTAAG-ACGG 793
Query 904 AACTCAACAGACTCAGGAAGCTTAACCCTCACGTCAACATCATATATGCTGACTACTACA 963
||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 794 AACTCAACAGACTTAGGAAGCTCAACCCTCATGTCAACATCATATACGCTGACTACTACA 853
Query 964 ATGCT-TCATTGCGCCTTGGCCGAGAACCAAGT-AAATACGGATTCATAAACAGACACTT 1021
| ||| || ||||||||| ||||||| | |||| ||| ||||| |||||| |||
Sbjct 854 ACGCTCTC-TTGCGCCTTTTTAAAGAACCA-GCCAAATTCGGGTTCATGGACAGACCCTT 911
Query 1022 GTCA-GCTTGTTGCGGTGTAGGAGGGCCGTACAACTTCAACTTAAGTAGAAGTTGTGGGA 1080
| || |||||||||||| ||||||| ||||||||||||||||| | ||||| |||||||
Sbjct 912 G-CATGCTTGTTGCGGTATAGGAGGACCGTACAACTTCAACTTCACTAGAAAATGTGGGA 970
Query 1081 GTGTAGGAGTGGAAGCTTGTA-GTGATCCTTCAAAGTATGTGGCCTGGGATGGCCTTCAT 1139
|||||||||| ||| |||||| | ||||||||||||||||||| |||||| ||| |||||
Sbjct 971 GTGTAGGAGTTGAATCTTGTAAG-GATCCTTCAAAGTATGTGGGCTGGGACGGCGTTCAT 1029
Query 1140 ATGACTGAGGCTGCACACAAATCGATGGCTGATGGATTAGTCAAAGGACCATATGCGATT 1199
||||||||||||||| |||||| ||| ||||||||| || |||||||||| |||||||||
Sbjct 1030 ATGACTGAGGCTGCATACAAATGGATAGCTGATGGAATACTCAAAGGACCGTATGCGATT 1089
Query 1200 CCTCCTTTCGATTGGTCATGTCTCAGCTCA-ATGATTAAGAAGAAGGAAGTCGTTGGA-A 1257
|||||||| ||| |||| || ||||| || | ||||||||| ||||| ||| || || |
Sbjct 1090 CCTCCTTTTGATCGGTCCTGCCTCAGATCTGA-GATTAAGAACAAGGA-GTCATTAGACA 1147
Query 1258 ACACAAT 1264
| |||||
Sbjct 1148 A-ACAAT 1153
Score = 926 bits (501), Expect = 0.0
Identities = 966/1186 (81%), Gaps = 50/1186 (4%)
Strand=Plus/Plus
Query 91 CTCCCATGGCGTCGCTAGATTCTCATGTGTTGATGAAACTAGGT-AGCCTCTTTTTATCT 149
|||||||||| || | |||||||| | || |||||| || || ||| |||| ||||||
Sbjct 1253 CTCCCATGGCATCTCCAGATTCTCTTCTGGCGATGAAGCT-CGTGAGCTTCTTATTATCT 1311
Query 150 ACTCTTTTTGT---TTCTATCGTAAGCTCGGAATCGCAGTGCCGGAACTTCGAGTCGATC 206
|||||||| || |||| || || |||| || |||| |||||||| ||| | || |||
Sbjct 1312 ACTCTTTTGGTCACTTCT-GCG-AA-CTCGCAAACGCAATGCCGGAATTTCAAATCAATC 1368
Query 207 ATCAGTTTCGGCGATTCGATTGCCGACACTGGAAACTTGCTAGGTCTCTCAGATCATAAC 266
|| |||||||| ||||| ||||||||||| ||||||||||| |||||||| |||| ||||
Sbjct 1369 ATTAGTTTCGGGGATTCAATTGCCGACACCGGAAACTTGCTCGGTCTCTCGGATCCTAAC 1428
Query 267 AATCTTCCTATG-AGC-GCGTTTCCACCGTACGGAGAAACTTTCTTCCACCACCCAACCG 324
|||||||| || | || |||| ||||||||||||||| |||||||||||||||||||
Sbjct 1429 AATCTTCC--TGCTTCAGCATTTCTACCGTACGGAGAAACCTTCTTCCACCACCCAACCG 1486
Query 325 GTCGTTTCTCTGACGGTCGCCTCATCATTGACTTCATCGCTGAATTTTTGGGGCTTCC-T 383
|||||| ||| ||||| ||||||||||| || ||||| |||||||| ||||| ||||
Sbjct 1487 GTCGTTACTCCGACGGCCGCCTCATCATCGATTTCATTGCTGAATTCTTGGGTTTTCCGC 1546
Query 384 TATGTGCCTCCTTACTT-CGGATCTAC-AAATGGAAACTTTGAGAAAGGAGTTAATTTTG 441
| ||||||||||| || ||||| | | ||||| |||||||||||| ||||||||||| |
Sbjct 1547 T-TGTGCCTCCTT-TTTACGGATGT-CGAAATGCAAACTTTGAGAAGGGAGTTAATTTCG 1603
Query 442 CCGTAGCCTCAGCAACTGCATTGGAAAGTTCTTTTCTAGAAGAGAAAGG-ATACCA-T-T 498
| || | |||||| ||||| || | ||| ||||| || ||| ||| || || | |
Sbjct 1604 CGGTGGGGGGAGCAACAGCATTAGATACTTCCTTTCTTGAGGAGGGAGGAAT-TCATTCT 1662
Query 499 G-TCCTCA-CAACTTCAGTTTAGGAGTTCAGCTTAAGATCTTCAAGCAGAGCTTACC-AA 555
| | | | |||| ||||| || | |||||||||| || ||||||| | || || || ||
Sbjct 1663 GAT-ATTACCAACGTCAGTCTAAGCGTTCAGCTTAGGAGCTTCAAGGAAAGTTTGCCTAA 1721
Query 556 ATCTATGTGGCT-TACCATCAGATTGTAGAGATATGATTGGAAATGCTTTGATTCTCATG 614
| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 CT-TATGTGGCTCT-CCATCAGATTGTAGAGATATGATTGGAAATGCTTTGATTCTCATG 1779
Query 615 GGAGAGATTGGAGCTAATGATTACAATTTCCCATTCTTCCAACTCAGA-CCATTGGACGA 673
|||||||| |||| |||||||| |||||| || ||||||| | || | |||||| | ||
Sbjct 1780 GGAGAGATCGGAGGAAATGATTATAATTTCGCACTCTTCCAGCGCAAAGCCATTG-AGGA 1838
Query 674 GGTCAAAGAGCTTGTTCCGTTGGTGATTAGTACTATTTCTTCTG-CGATTACGGAGTTGA 732
|| ||||||| |||||||| ||| | ||| | ||||||| || | |||| ||| |||
Sbjct 1839 AGTTGAAGAGCTGGTTCCGTTTGTGGTCAGTGCCATTTCTT-TGGCAATTAAGGAATTGG 1897
Query 733 T-TGGTATGGGAGGAAGAACATTTCTGGTGCCCGGAGGGTTCCCTCTCGGATGCTCAGTA 791
| || |||||||| ||||||||| || || || ||| || || ||||||||||| |||
Sbjct 1898 TCTG-TATGGGAGCAAGAACATTCCTAGTTCCTGGAAATTTTCCGCTCGGATGCTCTGTA 1956
Query 792 GCATT-TTTGACATTACACCAAACATCAAACATGGAAGAATATGATCCTTTAACAGGATG 850
|| || |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1957 GC-TTATTTGACATTATACCAAACATCAAACATGGAAGAATATGATCCTCTAACAGGATG 2015
Query 851 TTTGAAATGGCTGAACAAGTTTGGAGAATACCACAGTGAGCAGCTTCAGGAAGAACTCAA 910
|||||||||||||||| ||| |||||| ||| |||||||||||| ||||||||||
Sbjct 2016 TTTGAAATGGCTGAACGTTTTTTCAGAATATTACAACGAGCAGCTTCAGAAAGAACTCAA 2075
Query 911 CAGACTCA-GGAAGCT-TAACCCTCACGTCAACATCATATATGCTGACTACTACAATGCT 968
|||||||| ||| | | || |||||| ||||||||||||||||||||||||||||| |||
Sbjct 2076 CAGACTCAAGGA-GTTGTA-CCCTCATGTCAACATCATATATGCTGACTACTACAACGCT 2133
Query 969 -TCATTGCGCCTTGGCCGAGAACCAAGT-AAATACGGATTCATAAACAGACACTTGTCAG 1026
| ||||||||| || ||||||| | |||| ||| ||||| |||||| |||| | |
Sbjct 2134 CTG-TTGCGCCTTTTCCCAGAACCA-GCCAAATTCGGGTTCATGGACAGACCCTTGCCCG 2191
Query 1027 CTTGTTGCGGTGT-AGGAGGGCCGTACAACTTCAACTTAAGTAGAAGTTGTGGGAGTGTA 1085
|||||||||| || ||| || || |||||||||||||| |||||||| ||||||||||||
Sbjct 2192 CTTGTTGCGG-GTTAGGTGGACCATACAACTTCAACTTTAGTAGAAGATGTGGGAGTGTA 2250
Query 1086 GGAGTGGAAGCTTGTAGTGATCCTTCAAAGTATGTGGCCTGGGATGGCCTTCATATGACT 1145
||||| ||| ||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct 2251 GGAGTTGAATATTGTAGTGATCCTTCCAAGTATGTGAATTGGGATGGCATTCATATGACT 2310
Query 1146 GAGGCTGCACACAAATCGATGGCTGATGGATTAGTCAAAGGACCATATGCGATTCCTCCT 1205
|| || ||| ||| || ||| |||| || ||| |||| ||||| ||||| |||||| ||
Sbjct 2311 GAAGCCGCATACAGATGGATATCTGAGGGCTTACTCAAGGGACCGTATGCTATTCCTACT 2370
Query 1206 TTCGATTGGTCATGTCTCAGCTCA-ATGATTAAGAAGAAGGAAGTC 1250
||| |||||||||| || ||||| | ||||| ||| ||| |||||
Sbjct 2371 TTCAATTGGTCATGCCTAAGCTCCGA-GATTATGAATAAG-AAGTC 2414
> Ahg900444 jgi|Araly1|900444|Al_scaffold_0004_1094
Length=1179
Score = 928 bits (502), Expect = 0.0
Identities = 955/1170 (82%), Gaps = 45/1170 (4%)
Strand=Plus/Plus
Query 135 AGCCTCTTTTTATCTACTCTTTTTGTTTCTATCGTAAGCTCGGAATC-GCAGTGCCGGAA 193
||| ||||| ||| ||||||||| || |||| || | |||| || | | | ||||||||
Sbjct 31 AGCTTCTTTATATATACTCTTTTAGTCACTATAGTGACCTCGCAAACGGGA-TGCCGGAA 89
Query 194 CTTCGAGTCGATCATCAGTTTCGGCGATTCGATTGCCGACACTGGAAACTTGCTAGGTCT 253
||||||||||||||||||||| |||||||| ||| | ||||| ||||||||||| |||||
Sbjct 90 CTTCGAGTCGATCATCAGTTTTGGCGATTCAATTACGGACACCGGAAACTTGCTCGGTCT 149
Query 254 CTC-AGATCATAACAATCTTCCTATGAG-C-GCGTTTCCACCGTACGGAGAAACTTTCTT 310
||| || || ||| ||||||| |||| | ||||||||||| ||||||||||| |||||
Sbjct 150 CTCTAG-TCCTAAGGATCTTCC--TGAGTCGGCGTTTCCACCATACGGAGAAACCTTCTT 206
Query 311 CCACCA-CCCAACCGGTCGTTTCTCTGACGGTCGCCTCATCATTGACTTCATCGCTGAAT 369
|||| | ||| | || |||||||| ||||| ||||||||||| || ||||| |||||||
Sbjct 207 CCACTATCCC-TCGGGCCGTTTCTCCGACGGCCGCCTCATCATCGATTTCATTGCTGAAT 265
Query 370 TTTTGGGGCTTCCTTATGTGCCTCC-TTACTT-CGGATCTACAAATGGAAACTTTGAGAA 427
| || ||| |||| |||||||||| || || ||||||| ||||||||||||||||||
Sbjct 266 TCTTAGGGATTCCACATGTGCCTCCATT--TTATGGATCTAAAAATGGAAACTTTGAGAA 323
Query 428 AGGAGTTAATTTTGCCGTAGCCTCAGCAACTGCATTGGAAAGTTCTTTTCTAGAAGAGAA 487
||||||||||||||| || | |||||| ||| | ||| ||||| |||| || ||||
Sbjct 324 AGGAGTTAATTTTGCGGTGGGAGGAGCAACAGCACTAGAATGTTCTGTTCTTGAGGAGAG 383
Query 488 AGGATAC-CATTGTCCTC--A-CAACTTCAGTTTAGGAGTTCAGCTTAAGATCTTC-AAG 542
|||| || |||||| ||| | |||| ||||||||||| |||||||||| |||| |||
Sbjct 384 AGGA-ACTCATTGTTCTCAAAGCAACATCAGTTTAGGAAACCAGCTTAAGAGCTTCAAAG 442
Query 543 CAGAGCTTACCAAATCTATGTGGCTTAC-CATC---AGATTGTAGAGATATGATTGGAAA 598
|||| |||||| |||| |||||| | | |||| ||||||||||||||||||||||||
Sbjct 443 -AGAGTTTACCATATCTTTGTGGC-TCCTCATCAGTAGATTGTAGAGATATGATTGGAAA 500
Query 599 TGCTTTGATTCTCATGGGAGAGATTGGAGCTAATGATTACAATTTCCCATTCTTCCAACT 658
|||||| |||||||| ||||| ||||||| |||||||| || |||||||| ||| | |
Sbjct 501 TGCTTTTATTCTCATTGGAGAAATTGGAGGGAATGATTATAACTTCCCATTATTCGATCG 560
Query 659 C-AGACCATTGGACGAGGTCAAAGAGCTTGTTCC-GTTGGTGATTAGTACTATTTCTTCT 716
| | | |||| || || ||||||||||| ||||| || ||||| | ||||||||||||
Sbjct 561 CAAAAACATT-GAGGAAGTCAAAGAGCTGGTTCCACTT-GTGATCACTACTATTTCTTCG 618
Query 717 GCGATTACGGAGTTGATTGGTATGGGAGGAAGAACATTTCTGGTGCCCGGAGGGTTCCCT 776
|||||| |||||||| ||| |||||||| ||||||||| || || || ||| |||||
Sbjct 619 GCGATTTCGGAGTTGGTTGATATGGGAGCAAGAACATTCCTAGTTCCTGGAAATTTCCCG 678
Query 777 CTCGGATGCTCAGTAGCATTTTTGACATTACACCAAACATCAAACATGGAAGAATATGAT 836
||||||||||| ||||| | |||||| ||| | ||||||| |||| ||||||||| ||
Sbjct 679 CTCGGATGCTCTGTAGCCTATTTGACGTTATATGAAACATCGAACAAGGAAGAATACAAT 738
Query 837 CCTTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGAGAATACCACAGTGAGCAGCTT 896
||| ||||||||||||||| |||| ||||| | ||| || |||||||| |||||||||
Sbjct 739 CCTCTAACAGGATGTTTGACATGGTTGAACGACTTTTCAGTATACCACAACGAGCAGCTT 798
Query 897 CAGGAAGAACTCAACAGACTCAGGAAGCTTAACCCTCACGTCAACATCATATATGCTGAC 956
|| | ||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||||
Sbjct 799 CAAGCAGAACTCAACAGACTTAGGAAGCTTTACCCTCATGTCAACATCATATATGGTGAC 858
Query 957 TACTACAATGCTTC-ATTGCGCCTTG-GCCGAGAACCAAGTAAATAC-GGATTCATAAAC 1013
|||||||| | || |||||||||| | | ||||||| |||| | || || || ||
Sbjct 859 TACTACAACAC-TCTGTTGCGCCTTGTG-CAAGAACCATCCAAATTCGGGCTT-ATGGAC 915
Query 1014 AGACAC-TTGTCAGCTTGTTGCGGTGTAGGAGGGCCGTACAACTTCAACTTAAGTAGAAG 1072
|||| | ||| | ||||||||||| |||||||| || |||||||||| ||| |||| ||
Sbjct 916 AGAC-CTTTGCCCGCTTGTTGCGGGGTAGGAGGACCATACAACTTCACCTTTAGTATAAA 974
Query 1073 TTGTGGGAGTGTAGGAGTGGAAGCTTGTAGTGATCCTTCAAAGTATGTGGCCTGGGATGG 1132
||||||||| |||||| ||| ||||||||| ||||| ||||||||| ||||| ||
Sbjct 975 ATGTGGGAGTAAAGGAGTTGAATATTGTAGTGACCCTTCGAAGTATGTGAATTGGGACGG 1034
Query 1133 CCTTCATATGACTGAGGCTGCACACAAATCGATGGCTGATGG-ATTAGTCAAAGGACCAT 1191
| |||||||||||||||||||| |||||| ||| | || || | || ||||||||||||
Sbjct 1035 CATTCATATGACTGAGGCTGCATACAAATGGATATCCGAGGGCA-TACTCAAAGGACCAT 1093
Query 1192 ATGCGATTCCTCCTTTCGATTGGTCATGTCTCAGCTCA-ATGATTAAGAAGAAGGAAGTC 1250
||||||||||||||||||||||||| || |||||||| | ||||||| | ||| |||||
Sbjct 1094 ATGCGATTCCTCCTTTCGATTGGTCCTGCCTCAGCTCTGA-GATTAAGGACAAG-AAGTC 1151
Query 1251 GTTGGAAACACAATATTCTTTGATGAATAG 1280
|| || ||||| ||||||||||||||||
Sbjct 1152 ATTAGA--CACAACATTCTTTGATGAATAG 1179
> Ahg473078 jgi|Araly1|473078|fgenesh2_kg.1__3032__AT1G28580.1
Length=1275
Score = 917 bits (496), Expect = 0.0
Identities = 935/1138 (82%), Gaps = 65/1138 (6%)
Strand=Plus/Plus
Query 139 TCTTTTTATCTACTCTTT-TTGTTTCTATCGTAAGCTCGGAATCGCAGTGCCGGAACTTC 197
|||||||||| ||| ||| |||| ||| ||| ||||||||| | |||||||| | |||
Sbjct 89 TCTTTTTATCAACT-TTTATTGTCACTAACGTCAGCTCGGAAACTAAGTGCCGGGAGTTC 147
Query 198 GAG-TCGATCATCAGTTTCGGCGATTCGATTGCCGACACTGGAAACTTGCTAGGTCTCTC 256
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 148 -AGATCGATCATCAGTTTCGGAGATTCGATTGCCGACACTGGAAACTTGCTTGGCCTCTC 206
Query 257 AGATCATAACAATCTTCCT-ATGA-GCGCGTTTCCACCGTACGGAGAAACTTTCTTCCAC 314
||||| |||| |||||||| | | | |||||||||||||||||||| || |||||||||
Sbjct 207 AGATCCTAACGATCTTCCTCA-CATG-GCGTTTCCACCGTACGGAGAGACCTTCTTCCAC 264
Query 315 CACCCAACCGGTCGTTTCTCTGACGGTCGCCTCATCATTGACTTCATCGCTGAATTTTTG 374
|||||||| ||||||||||| | || |||||||| ||||| |||||||||||||| ||
Sbjct 265 CACCCAACTGGTCGTTTCTCCAATGGCCGCCTCATTATTGATTTCATCGCTGAATTCTT- 323
Query 375 GGGCTT-CC-TTATGTGCCTCCTTACTT-CGGATCTAC-AAATGGAAACTTTGAGAAAGG 430
||| || || | ||||||||||| || |||||| | ||||| |||||||||||| ||
Sbjct 324 GGGTTTACCGCT-TGTGCCTCCTT-TTTATGGATCT-CAAAATGCAAACTTTGAGAAGGG 380
Query 431 AGTTAATTTTGCCGTAGCCTCAGCAACTGCATTGGAAAGTTCTTTTCTAGAAGAGAAAGG 490
|||||| || || |||| |||||| ||| ||||| |||| ||||| ||||||| |||
Sbjct 381 AGTTAACTTCGCGGTAGGGGGAGCAACGGCACTGGAACGTTCCTTTCTTGAAGAGAGAGG 440
Query 491 -ATACCATTGTCC-T-CA-CAACT-TCAGTTTAGGAGTTCAGCTTAAGATCTTCAAGCAG 545
|| |||| ||| | || ||| | |||||||||| ||||||||||| | ||||||| ||
Sbjct 441 AAT-TCATTTTCCTTACACCAA-TGTCAGTTTAGGCGTTCAGCTTAATAGCTTCAAGGAG 498
Query 546 AGCTTACCAAATC-TATGTGGCT-TACCATCAGATTGTAGAGATATGATTGGAAATGCTT 603
|| || || | | ||||||||| | || ||||| || ||||||||||| | ||||||||
Sbjct 499 AGTTTGCC-TAGCATATGTGGCTCT-CCTTCAGACTGCAGAGATATGATAGAAAATGCTT 556
Query 604 TGATTCTCATGGGAGAGATTGGAGCTAATGATTACAATTTCCCATTCTTC--CAACTCAG 661
|||||||||||||||| ||||||| |||||||| |||| | |||| ||| || |
Sbjct 557 TGATTCTCATGGGAGAAATTGGAGGGAATGATTATAATTACGCATTTTTCGTGGAC-AAA 615
Query 662 ACCATTGGACGAGGTCAAA-GAGCTTG-TTCCGTTGGTGATTAGTACTATTTCTTCTGCG 719
| |||| || ||| | ||| |||| || || ||||||| | |||||||||||||||
Sbjct 616 AGCATT-GAAGAGAT-AAAGGAGC-TGACGCCCCTGGTGATCACTACTATTTCTTCTGCA 672
Query 720 ATTACGGAGTTGATTGGTATGGGAGGAAGAACATTTCTGGTGCCCGGAGGGTTCCCTCTC 779
|| ||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |
Sbjct 673 ATCACGGAGTTGATCAGTATGGGGGGAAGAACATTTCTGGTGCCCGGAGAGTTCCCAGTT 732
Query 780 GGATGCTCAGTA-GCATTTTTGACATTACACCAAACATCAAACATGGAAGAATATGATCC 838
|||||||||||| | | |||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 733 GGATGCTCAGTATTC-TATTTGACATCACATCAAACATCAAACATGGAAGAATACGATCC 791
Query 839 TTTAACAGGATGTTTGAAATGGCTGAACAAGTTTGGAGAATACCACAGTGAGCAGCTTCA 898
|||||| |||||||||||||||||||| || ||||||||| ||||| | ||||||||||
Sbjct 792 TTTAACCGGATGTTTGAAATGGCTGAATAACTTTGGAGAAAACCACGGCGAGCAGCTTC- 850
Query 899 G-GAAGAACTCAACAGAC-TCAGGAAGCTT-AACCCTCACGTCAACATCATATATGCTGA 955
| | ||||||||| |||| ||| |||| || ||||||| ||||||||||||||||||||
Sbjct 851 GAGCAGAACTCAAGAGACTTCA-GAAG-TTGTACCCTCATGTCAACATCATATATGCTGA 908
Query 956 CTACTACAATGCT-TCATTGCGCCTTGGCCGAGAACCAAGT-AAATACGGATTCATAAAC 1013
||||||||| ||| | ||||||||| || ||||||| | |||| ||||||||| |||
Sbjct 909 CTACTACAACGCTCTG-TTGCGCCTTTACCAAGAACCA-GCCAAATTCGGATTCATGAAC 966
Query 1014 AGACACTTGTCAGCTTGTTGCGG-TGTAGGAGGGCCGTACAACT-TCAACTTAAGTAGAA 1071
|||| |||||| ||||||||||| | |||||| |||||||||| | | | || ||||||
Sbjct 967 AGACCCTTGTCCGCTTGTTGCGGCTC-AGGAGGACCGTACAACTAT-ACCGTAGGTAGAA 1024
Query 1072 GTTGTGGGAGTG-TAGGAGTGGAA-GCTTGTAGTGATCCTTCAAAGTATGTGGCCTGGGA 1129
||||||| || || ||| ||| | ||||| ||||||||||||||||||||| |||||
Sbjct 1025 AATGTGGGACTGATAT-AGTTGAAAG-TTGTAATGATCCTTCAAAGTATGTGGCTTGGGA 1082
Query 1130 TGGCCTTCATATGACTGAGGCTGCAC-ACAAATCGATGGCTGATGG-ATTAGTCAAAGG- 1186
||| ||||| ||||||||||||| | ||| || ||||||||| || || | | |||||
Sbjct 1083 CGGCGTTCATCTGACTGAGGCTGC-CTACAGATTGATGGCTGAGGGTAT-ACT-AAAGGG 1139
Query 1187 ACCATATGCGATTCCTCCTTTCGATTGGTCATGTCTCAGCTCAATG-A-TTAAGAAGA 1242
||| ||||||||||||||||| |||||||| || || ||||| || | |||||||||
Sbjct 1140 ACCCTATGCGATTCCTCCTTTTGATTGGTCTTGCCTTAGCTC--TGGAATTAAGAAGA 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51955094180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5