BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31600.1
Length=2223
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473619 jgi|Araly1|473619|fgenesh2_kg.1__3573__AT1G31600.2 1866 0.0
> Ahg473619 jgi|Araly1|473619|fgenesh2_kg.1__3573__AT1G31600.2
Length=1256
Score = 1866 bits (1010), Expect = 0.0
Identities = 1183/1266 (93%), Gaps = 13/1266 (1%)
Strand=Plus/Plus
Query 717 GATACCTCGCCGTTATACGATCGGAGAAAGTTACAGTCTTTTATTCCGAGAATGGTTCAG 776
|||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1 GATACCTCGCCGTTATACAATCGGAGAAAGTTACAATCTCTTATTCCGAGAATGGTTCAG 60
Query 777 CCGCGATTCGTCCGTCCGACGCAATCATCGCCATCTTCCATTTCTGGAGAACCAAATTCA 836
||||||||||||||||||||||||||||| || || |||| ||| |||||| ||||||||
Sbjct 61 CCGCGATTCGTCCGTCCGACGCAATCATCCCCTTCCTCCAATTCCGGAGAATCAAATTCA 120
Query 837 TCAAATCTATACGTCGCGAATTGTGGACCGGCGGTTGGACTAACACACAACGCAATCGCG 896
|| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||
Sbjct 121 TCCAATCTATACGTCGCCAATTGTGGACCGGCGGTTGGACTATCACACGACGCAATCGCG 180
Query 897 GCGGTGTTCGCTG-AGTTCGGTGAAGTAAACGGAGTCTACGCGGCGGATGATAGCGGCGT 955
||||||||||||| | | |||| |||||||||| ||||||||||| || |||||||||||
Sbjct 181 GCGGTGTTCGCTGCA-TACGGTAAAGTAAACGGCGTCTACGCGGCTGACGATAGCGGCGT 239
Query 956 TCGTGTTATCGTCTCTTTCGCTGATCCCTT-CTCCGCGAAAGCAGCTCTAGAAGCTTTGA 1014
|||| |||| |||||||||| ||| |||| || |||||| ||||| ||||||||||||
Sbjct 240 TCGTATTATTATCTCTTTCGCAGAT-CCTTGTTCGGCGAAATCAGCTTTAGAAGCTTTGA 298
Query 1015 GTGGTCGACCATGTCCTGACCTTAAAGGACGTTCTTTGCATATTCGATATTCAGTTCTTC 1074
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 299 ATGGTCGACCATGTCCTGACCTTAAAGGACGGTCTTTGCATATTCGATATTCAGTTCTTC 358
Query 1075 AATTACCTTCCGAGACGCAGGTGAATGATTGTGTTCCAGTGTCTTTGATTGATTCAGAGT 1134
||||||||| | || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 359 AATTACCTT-C----CG-AGGTGAATGATTGTGTTCCAGTGTCTTTGGTTGATTCAGAGT 412
Query 1135 TGAATATTCCAGGGCTTTTCTTGTTACCTGATTTTGTCACTGTGGCAGAAGAACAGCAAT 1194
||||||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 413 TGAATATCCCAGGGCTTTTCTTGTTACCTGATTTTGTTAGTGTGGAAGAAGAACAGCAAT 472
Query 1195 TGCTTGCAGCTGTTGATGCTCGACATTGGATTGGTCTTGCTAAACGGCGTGTTCAACACT 1254
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 473 TGCTTGCAGCTGTTGATGCTCGGCCTTGGATTGGTCTTGCTAAACGGCGTGTTCAACACT 532
Query 1255 ATGGATATGAGTTTTGTTACGGGACAAGAAATGTTGATACCAAAAAGCGTCTCGGTGAGC 1314
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 533 ATGGATATGAGTTTTGTTACGGGACAAGAAATGTTGATACCAAGAAGCGTCTTGGCGAGC 592
Query 1315 TTCCGTCGTTTGTTTCTCCTATACTTGAAAGAATCTATTTGTTCCCGAACTTTGACAACG 1374
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 593 TTCCGTCGTTTGTTTCTCCTATACTTGAAAGAATGTCGTTGTTCCCGAACTTCGACATTA 652
Query 1375 GCTCAGCAAGCTTGAATTTGGACCAGTTAACGGTAAATGAGTACCCATCTGGTGTGGGAT 1434
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 653 ACTCAGCAAGCTTGGATTTGGACCAGTTAACGGTAAATGAATACCCATCTGGTGTGGGTT 712
Query 1435 TATCGCCTCATATTGATACACATTCAGCATTTGAAGATTGCATATTCAGCCTTTCTTTAG 1494
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 713 TATCGCCTCACATTGACACACATTCAGCATTTGAAGATTGCATCTTCAGCCTTTCTTTAG 772
Query 1495 CTGGTCCTTGTATTATGGAATTCAGAAGATACTCTGTTTCCACATGGAAAGCCTCAACTA 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 773 CTGGTCCTTGTATTATGGAATTCAGAAGATACTCTGTTTCCACATGGAAAGCCTCATCTG 832
Query 1555 CCGATGCTGAGAAGTCGGGTGACTCCTCTTGCATCAAAAAGGCCTTATATCTTCCTCCTC 1614
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 833 CCGATGCTGAGAAGTCGGGTGACTCCTCTTGCATCAGAAAGGCCTTATATCTTCCTCCTC 892
Query 1615 GGTCTATGCTCTTATTATCCGGTGAAGCACGATATGCTTGGAATCACTACATTCCACATC 1674
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 GGTCCATGCTCTTATTATCCGGTGAAGCACGCTATGCTTGGAATCACTACATTCCACATC 952
Query 1675 ACAAGATTGACAAGGTGAAGGATAAAGTGATCAGAAGAAGTTCTAGAAGGGTATCTTTCA 1734
||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 953 ACAAGATTGGCAAGGTGAAGGAGAAAGTGATCAGAAGAAGTTCCAGAAGGGTATCTTTCA 1012
Query 1735 CATTACGGAAGGTGAGAAATCATCCTTGCA-GTTGTAAGTATCCACAATACTGTGACTCT 1793
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1013 CATTACGGAAGGTGAGAAATCTTCCTTGCAAGT-GTAAGTATCCACAATACTGTGACTCT 1071
Query 1794 CAGCAACAAATGTAACTGAAGAAGAGGAGAAAAATGAAATGAATAATATTTTTAGGTATA 1853
|||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct 1072 CAGCAACAAATGTAACTGAAGAAGAGGAGAAAAATGAAATAAAGAATATTTT-AGGTAGA 1130
Query 1854 GACAAAATGCATATGGAGAAGAAAAAGAAGAGCCATTTTTGTAGCTGTTTACTCTTAATT 1913
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1131 GACAAAATGCATATGGAGAAGAAAAAGAAGAACCATTTTTGTAGCTGTTTACTCTTAATT 1190
Query 1914 ATTTAACTAGATTTGGATGATAAACATTGTTACAGTTGTATTGCATCATAGAAAGAAAGA 1973
||| |||||||||| ||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1191 ATTAAACTAGATTTTGATGATAAACATTGTTACATTTGCATTGCAACATAGAAAGAAAGA 1250
Query 1974 TCATCG 1979
||||||
Sbjct 1251 TCATCG 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684268265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5