BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31650.1
Length=2255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913314 jgi|Araly1|913314|Al_scaffold_0001_3568 2595 0.0
Ahg934181 jgi|Araly1|934181|scaffold_402169.1 455 7e-127
> Ahg913314 jgi|Araly1|913314|Al_scaffold_0001_3568
Length=1644
Score = 2595 bits (1405), Expect = 0.0
Identities = 1570/1650 (95%), Gaps = 9/1650 (1%)
Strand=Plus/Plus
Query 436 ATGATTACATATTATGGCTTGGAAACTTGTATTATCAATAATCAATCATATGAAGAAGAG 495
||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 1 ATGATTACATACGACGGCTTGGAGACTTGTATCATCAACAATCAATCATATGAAGAAGAA 60
Query 496 AGTGGAACAAGTCGAGGAGATGGATGTCTTACAGATTCGTTAGATGATGATGCATTTTCA 555
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 61 AGCGGAACAAGTCGAGGAGATGGATGCCTGACAGATTCGTTGGATGATGATGCATTTTCA 120
Query 556 AGCTGTTCATCAAGCAAAGATGCCTCTAGCTCTTTTTCTTCGAAATGGTTACCGATGAAG 615
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AGCTGTTCATCAAGCAAAGATGCCTCTAGCTCTTTTTCTTCAAAATGGTTACCGATGAAG 180
Query 616 AATGATGAACACAGTTGCGATGGTTTGAACTTATCTGGAAGGTCTCAACATTTTGATGCT 675
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AATGATGAACACAGTTGCGACGGTTTGAACTTATCTGGAAGGTCTCATCATTTTGATGCT 240
Query 676 AAGGAGAAGAAGAAACAAGGCTATGGCAGTAGCCAACATTTTGATGCTAAGGAG-A-AA- 732
|| | | |||||||||||||||||||||||| |||||||||||||| ||||||| | ||
Sbjct 241 AA-G-G-AGAAGAAACAAGGCTATGGCAGTACCCAACATTTTGATGGTAAGGAGAAGAAG 297
Query 733 CCAGGGTATGTGTACTGTCATTTGGATGTGGAAGCTATGAAGGAGAAATTTTCTAAGTTA 792
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 298 TCAGGCTATGCCTACTGTCATTTGGATGTGGAAGCCATGAAGGAGAAATTTTCTAAGCTA 357
Query 793 TTGCTCGGCGAAGATGTCACTGGGGGATGTAAGGGTGTCCAAGTAGCTTTGGCTTTGTCA 852
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 TTGCTCGGCGAAGATGTCACTGGGGGATGCAAGGGTGTCCAAGTAGCTTTGGCTTTGTCA 417
Query 853 AATGCTGTAACACATCTTGCTACGTCGATTTTTGGCGAGCTCTGGAAATTGGAACCTTTG 912
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 418 AATGCTGTAACACATCTTGCTACGTCGATTTTCGGCGAGCTCTGGAAATTGGAACCCTTG 477
Query 913 TGTGAAGAGAAGAAACAGAAATGGAGAAGGGAAATGGATTGGCTACTTTCTCCAACTAAC 972
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGTGAGGAGAAAAAACAGAAATGGAGAAGGGAAATGGATTGGCTACTTTCTCCAACTAAC 537
Query 973 TACATGATTGAGTTAGTCCCTTCTAAGCAAAATGATGCCAATGGAAGATCACTTGAGATA 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TACATGATTGAGTTAGTCCCTTCTAAGCAAAATGATGCCAATGGAAGATCACTTGAGATA 597
Query 1033 ATGACTCCGAAAGCCCGCGCAGACATTCATATGAATCTCCCAGCTCTTCAGAAGTTGGAC 1092
||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 598 ATGACCCCGAAAGCCCGTGCAGACATTCATATGAATCTCCCTGCTCTACAGAAGTTGGAC 657
Query 1093 TCAATGCTAATTGAGACACTGGATTCTATGGTGAACACAGAGTTTTGGTATTCTGAGATT 1152
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCCATGCTAATCGAGACACTGGATTCTATGGTGAACACAGAGTTTTGGTATTCTGAGATT 717
Query 1153 GGTAGTAGAGCTGAAGGGAAGAACAAGAGTACAAGTGAGAGCAAACGATGGTGGCTTCCA 1212
|||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 718 GGTAGTAGAGCTGAGGGGAAGAACAAGACTACAAGCGAGAGCAAACGATGGTGGCTTCCA 777
Query 1213 TCGCCACAAGTGCCTAAACCTGGACTCTCTAACTCAGGAAGGAAGAAATTGCTTGACAAA 1272
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 778 TCGCCACAAGTGCCTAAACCCGGGCTCTCTAACTCAGGAAGGAAGAAATTACTTGACAAA 837
Query 1273 GGAAAAGTTGTTTATCAAGTCTTCAAAGCTACAAAAGCCATAAACGAAAACATTCTTCTT 1332
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 838 GGCAAAGTTGTTTATCAAGTCTTCAAAGCTACAAAAGCCATAAATGAAAACATTCTTCTT 897
Query 1333 GAAATGCCAGTTCCCATTGTTATCAAGGAAGCAATACCTAAATCTGGAAAGAACAGCCTC 1392
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 898 GAAATGCCAGTACCCGTTGTTATCAAGGAAGCAATACCCAAATCTGGAAAGAACAGCCTC 957
Query 1393 GGTGATGAACTGTACAAGATGTTGGCTGTGGAATCTGCAACAGTAGATGAAATCTTTATA 1452
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 958 GGTGATGAACTATACAAGATGTTGGCTGTGGAATCTGCCACAGTAGATGAAATCTTTATA 1017
Query 1453 TCGCTCAATCTGGGAACCGAACATGCAGCACTCGAGACAGTTAACAAGTTAGAATCTGCT 1512
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1018 TCTCTCAATCTGGGAACCGAACATGCAGCCCTCGAGACAGTTAACAAGTTAGAATCTGCT 1077
Query 1513 ATGTTTGCTTGGAAAGAAAGGATTACAGAACAAGGCAGCAATGGTAAATCCCCTGTAAGA 1572
|| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1078 ATATTTGCTTGGAAGGAAAGGATTACAGAACAAGGCAGCAGCGGTAAATCCCCTGTACGA 1137
Query 1573 GCATCGTGGTCATTCGCTAAAGATCCGTTGTCTGAAATTGGTCGCAATGAGTCACTCTTG 1632
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1138 GCATCGTGGTCATTCGCTAAAGATCCATTGTCTGAAATTGGTCGCAATGAGTCACTCTTG 1197
Query 1633 AACCGAGCAGAAGCGCTTAGAACTCAGATCAAATCCAAACACCCTAATCTCCCTCACTCG 1692
||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 1198 AACCGTGCAGAAGCGCTTAGAAATCATATCAAATCCAAACACCCTAATCTTCCTCACTCG 1257
Query 1693 TTTCTTGATGCTACAAAGATCCAATATGACAAGGACATAGGTCATGCGGTTCTCGAAGCA 1752
||||||||||| |||||||||||||||| ||||||||| |||||||||||||| || |||
Sbjct 1258 TTTCTTGATGCCACAAAGATCCAATATGGCAAGGACATTGGTCATGCGGTTCTTGAGGCA 1317
Query 1753 TATTCCCGAACACTTGCGAATCTAGCTTTCCGGATTCTTTCAAGAATGGGAGAAATCTTG 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TATTCCCGAACACTTGCGAATCTAGCTTTCCGGATTCTTTCAAGAATGGGAGAAATCTTG 1377
Query 1813 AAAGAAGATTCTTTAAGCAACCCTAACTCTCCTGCACCACCGAGTTGCTTCCCTAGCTCC 1872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AAAGAAGATTCTTTAAGCAACCCTAACTCTCCTGCACCACCGAGTTGCTTCCCTAGCTCC 1437
Query 1873 CGTGACCCTTATAGGACACCTGAGAGACCTCTGCTTTCGTCCCGTGTAAGGCATTCTTTA 1932
||||||||||| || ||||| ||||| ||| ||||||| |||||||||| ||||||||||
Sbjct 1438 CGTGACCCTTACAGAACACCCGAGAGGCCTTTGCTTTCATCCCGTGTAATGCATTCTTTA 1497
Query 1933 ACCGATGACATGAACAAAGCCGATGGGACAGAGACTGGTTTAGATTTTTTGTTTGCAGAT 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ACCGATGACATGAACAAAGCCGATGGGACAGAGACTGGTTTAGATTTTTTGTTTGCAGAT 1557
Query 1993 GCTAAGGCAAGTAATTCAGTGAATACAACTCCAAGTAGAAGCAGTAGACTGTGGTGTTTG 2052
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GCTAAGGCAAGT--T-CAGTGAATACAACTCCAAGTAGAAGCAGTAGACTGTGGTGTTTG 1614
Query 2053 AGTAAAGTGCCTTCTGATACTTCTCCTTGA 2082
|||||||||||||||||||||||| |||||
Sbjct 1615 AGTAAAGTGCCTTCTGATACTTCTTCTTGA 1644
> Ahg934181 jgi|Araly1|934181|scaffold_402169.1
Length=1294
Score = 455 bits (246), Expect = 7e-127
Identities = 409/486 (84%), Gaps = 18/486 (4%)
Strand=Plus/Plus
Query 711 ACATTT-TGATGCTAAGGAGAAACCAGGGTATGTGTACTGT-CATTT-GGATGTGGAAGC 767
|||||| | ||| ||||||||||| || || || ||| | | ||| || || ||||
Sbjct 236 ACATTTAT-ATGGTAAGGAGAAACGTGGCTA--TGCACTCTGCTTTTCTGACGTTGAAG- 291
Query 768 T-ATGAAGGAGAAATTTTCTAAGTTATTGCTCGGCGAAGATGTCACTGGG-GGATGTAAG 825
| |||||||||| |||||| ||| |||| ||||| |||||||| || ||| ||||| ||
Sbjct 292 TCATGAAGGAGAGATTTTCAAAGCTATTTCTCGGTGAAGATGTTAC-GGGAGGATGCAAC 350
Query 826 GGTGTCCAAGTAGCTTTGGCTTTGTCAAATGCTGTAACACATCTTGCTACGTCGATTTTT 885
||||| ||| ||||||||||| ||||| ||| |||| ||||||||||| ||| |||||
Sbjct 351 GGTGTGCAAACCGCTTTGGCTTTATCAAACGCTATAACTCATCTTGCTACCTCGGTTTTT 410
Query 886 GGCGAGCTCTGGAAATTGGAACCTTTGTGTGAAGAGAAGAAA-CAGAAATGGAGAAGGGA 944
|||||||||||||| |||||||| ||||||||||| || ||| |||| |||||||| |||
Sbjct 411 GGCGAGCTCTGGAAGTTGGAACCATTGTGTGAAGACAA-AAAGCAGAGATGGAGAACGGA 469
Query 945 AATGGATTGGCTACTTTCTCCAACTAACTACATGATTGAGTTAGTCCCTTCTAAGCAAAA 1004
|||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 470 AATGGATTGGTTACTCTCTCCAACTAACTACATGATTGAGTTAGTCCCATCTAAGCAAGA 529
Query 1005 TGATGCCAATGGAAGATCACTTGAGATAATGACTCCGAAAGCCCGCGCAGACATTCATAT 1064
|| | || ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 530 TGGCGAAAACGGAAGATCACTTGAGATAATGACGCCGAAAGCCCGTGCAGACATTCATAT 589
Query 1065 GAATCTCCCAGCTCTTCAGAAGTTGGACTCAATGCTAATTGAGACACTGGATTCTATGGT 1124
|||| | |||||||| | ||| |||||||| |||||||||||||||||||| ||| ||||
Sbjct 590 GAATATACCAGCTCTCCGGAAATTGGACTCCATGCTAATTGAGACACTGGACTCTGTGGT 649
Query 1125 GAACACAGAGTTTTGGTATTCTGAGATTGG-T-AGTAGAGCTGAAGGGAA-GAACAAGAG 1181
|||||||||||||||||||| || | ||| | | || || || ||||| ||||||||
Sbjct 650 AAACACAGAGTTTTGGTATTCAGA-AGTGGGTCACAAG-GCAGA-GGGAAAGAACAAGAT 706
Query 1182 TACAAG 1187
||||||
Sbjct 707 TACAAG 712
Score = 139 bits (75), Expect = 8e-32
Identities = 146/179 (82%), Gaps = 10/179 (6%)
Strand=Plus/Plus
Query 435 AATGATTACATATTATGGCTTGGAAACTTGTATTATCAATAATCAATCATAT-GAAGAAG 493
||| || || ||| ||||||| ||||||| ||| ||||| |||||||| | | |||||||
Sbjct 17 AATAATGACTTATGATGGCTTAGAAACTTATATCATCAACAATCAATC-TTTAGAAGAAG 75
Query 494 AGAGTGGAACAAGTCGAGGAGATGGATGT--CTTACA-GATTCGTTAGATGATGATGCAT 550
| ||||||||||| || |||||| || || | | | ||||| || ||||||||| |||
Sbjct 76 AAAGTGGAACAAGCCGCGGAGAT-GA-GTACCCGA-ATGATTCATTGGATGATGATTCAT 132
Query 551 TTTCAAGCTGTTCATCAAGCAAAGATGC-CTCTAGCTCTTTTTCTTCGAAATGGTTACC 608
||||||||||||||||||||||||||| ||| || || ||||| || |||| ||||||
Sbjct 133 TTTCAAGCTGTTCATCAAGCAAAGATGTGCTCGAG-TCATTTTCCTCAAAATTGTTACC 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84903156105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5