BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31690.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313750 jgi|Araly1|313750|fgenesh1_pm.C_scaffold_1002530 3177 0.0
Ahg922235 jgi|Araly1|922235|scaffold_103516.1 1393 0.0
> Ahg313750 jgi|Araly1|313750|fgenesh1_pm.C_scaffold_1002530
Length=2037
Score = 3177 bits (1720), Expect = 0.0
Identities = 1930/2032 (95%), Gaps = 12/2032 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCAAGTTCACTTAACCATTTTTATATTTTCTTCCATTTTCGTAATCTCATCATCT 60
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1 ATGGCTCAAGTTCACTTCACCATCTTTATCTTTTCTTCCATTTTCGTAATCTCCTCATCG 60
Query 61 AGCTTCATCCCACCTCCTCACCCCTTCGATCCCTTGACCGAGACTGAACTCAAACTTGTC 120
||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AGCTTCATCCCGGCGCCTCACCCCTTCGATCCCTTGACCGAGACTGAACTCAAACTCGTC 120
Query 121 CGTAA-CATCATCAACAAGTCGTACCCTATTGGTCATAACCATAAGTTCACGTTCCAATA 179
|| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CG-AACCATCATCAATAAGTCGTACCCTATTGGTCATAACCATAAGTTCACTTTCCAATA 179
Query 180 TGTGGGTCTCAACGAGCCT-GAAAAGTCCCTAGTCTTGTCGTGGCACTCATCACCAGACC 238
||||||||||||||| || || |||||||||||||| ||||||||||| ||||||| ||
Sbjct 180 CGTGGGTCTCAACGAG-CTCGACAAGTCCCTAGTCTTATCGTGGCACTCCTCACCAGGCC 238
Query 239 GCAACGTCAAACCACCACCACGTCAAGCTTTTGTCATCGCCCGAGATAAGGGCATGAGCC 298
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 239 ACAACGTCAAACCACCACCACGTCAAGCTTTTGTCATTGCCCGAGATAAGGGCAAGAGCC 298
Query 299 GAGAGATCGTTATTGACTTTTCCACTCGAGCAATTGTCTCGAACAAGATCCATGTAGGCA 358
||||||||||| ||||||||||||||||||| ||| |||| ||||||||||| |||||||
Sbjct 299 GAGAGATCGTTGTTGACTTTTCCACTCGAGCCATTATCTCCAACAAGATCCACGTAGGCA 358
Query 359 ATGGTAACCC-AATGCTAACTATTGACGAGCAGCAAGCAGCCACCGCGGTTGTTCAAAAG 417
|||||||||| || ||| |||||||||||||||||||||||||||||| |||||| |||
Sbjct 359 ATGGTAACCCTAA-GCTCACTATTGACGAGCAGCAAGCAGCCACCGCGCTTGTTCTTAAG 417
Query 418 TACAAGCCGTTCTGTGACTCGATAATAAAACGCGGCTTGAACTTGTCGGAAGTTGTGGTC 477
| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 418 TTCAAGCCGTTCTGTGACTCGATAGTGAAACGCGGCTTGAACTTGTCGGAAGTTGTGGTC 477
Query 478 ACCTCCTCAACGATGGGATGGTTTGGTGAGACA-AAGACGAAGAGGTTTATAAGAACGAT 536
|| ||||| |||||||||||||| ||||||| | ||||| |||||||| |||||||||||
Sbjct 478 ACGTCCTCCACGATGGGATGGTTCGGTGAGA-AGAAGACAAAGAGGTTGATAAGAACGAT 536
Query 537 ACCCTTTTATCTAAACGGATCGGTGAACACGTATCTTAGACCAATTGAAGGAATGACGAT 596
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 537 ACCCTTTTATCTAAACGGATCGGTGAACACGTATCTTAGACCAATTGAAGGCATGACGAT 596
Query 597 AATCGTTAACCTTGACCAGATGAAAGTAACGGGGTTCAAGGACAGGTTCACGGGTCCTAT 656
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||
Sbjct 597 AATCGTTAACCTTGACCAGATGAAAGTAGCGGAGTTCAAGGACAGATTCACGGGTCCTAT 656
Query 657 GCCGAAGGCTAACGGGAGAGAGTACCGTATCTCAAAGCTCAAGCCGCCGTTTGGCCCGTC 716
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCAAAGGCTGACGGGAGAGAGTACCGTATCTCAAAGCTCAAGCCGCCGTTTGGCCCGTC 716
Query 717 GCTTCGAAGTGCCGTCGTTTT-CCAGCCGGACGGTCCAGGGTTTAAGATCGATGGACACG 775
||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||
Sbjct 717 ACTTCGAAGTGCCGTC-TTTTACCAGCCGGACGGTCCAGGATTTAAGATCGATGGACACG 775
Query 776 TCGTGAGATGGGCAAATTGGGAGTTTCACATGTCATTTGACGTTCGAGCCGGTCTTGTCA 835
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 776 TCGTGAGATGGGCAAATTGGGAATTTCACATGTCATTTGACGTTCGAGCCGGTCTTGTCA 835
Query 836 TCTCTCTCGCGTCCATTTTCGACATGGACATGAACAGATACCGGCAAGTCCTATACAAAG 895
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 TCTCTCTCGCGTCCATTTTCGACATGGACATGAACAAATACCGGCAAGTCCTATACAAAG 895
Query 896 GTCATTTGTCGGAGATGTTCGTACCTTACATGGACCCAAATGACGACTGGTACTTCATTA 955
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 896 GCCATTTGTCGGAGATGTTCGTACCTTACATGGACCCAAATGATGACTGGTACTTCATCA 955
Query 956 GTTACCTAGACTGTGGTGAATTTGGCTGCGGCCAAACTGCCGTATCCCTTGAGCCGTATA 1015
||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 956 GTTACCTAGACTGTGGTGAATTTGGCTGCGGGCAATCTGCCGTGTCCCTTGAGCCGTATA 1015
Query 1016 CTGATTGTCCCCCGAATGCCGCTTTCATGGATGGCATCTTCCCGGGACAAGATGGAACTC 1075
| ||||||||||| |||||||| ||||| |||||| |||| ||||||||||||||||||
Sbjct 1016 CCGATTGTCCCCCAAATGCCGCCTTCATAGATGGCGTCTTTGCGGGACAAGATGGAACTC 1075
Query 1076 CTACAAAAATATCGAATGTTATGTGCATTTTCGAAAAATATGCTGGAGACATTATGTGGC 1135
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CTACAAAAGTATCGAATGTTATGTGCATTTTCGAAAAATATGCTGGAGACATTATGTGGC 1135
Query 1136 GACATACCGAAGCTGAAGTACCCGGCTTAAAAATCACAGAGGTTAGACCAGATGTAAGTC 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GACATACCGAAGCTGAAGTACCCGGCTTAAAAATCACAGAGGTTAGACCAGATGTAAGTC 1195
Query 1196 TTGTAGCCCGGATGGTGACGACAGTGGGGAACTACGACTACATCATCGAGTATGAGTTCA 1255
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1196 TTGTAGCCCGGATGGTGACGACAGTGGGGAACTACGATTACATCATTGAGTATGAGTTCA 1255
Query 1256 AACCAAGTGGTTCCATCAAAATGGGGGTCGGTTTAACCGGTGTTTTAGAAGTTAAACCTG 1315
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 AACCTAGCGGTTCCATCAAAATGGGGGTCGGTTTAACCGGTGTTTTAGAAGTTAAACCCG 1315
Query 1316 TGGAATATGTTCACACATCAGAGATCAAAGAAGACGACATCTACGGGACAATTGTTGCTG 1375
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1316 TGGAATATGTTCACACATCAGAGATCAACGAAGACGACATCTACGGGACAATTGTTGCTG 1375
Query 1376 ACAACACCGTCGGAGTTAACCACGATCACTTCGTGACATTCCGTCTTGATCTTGATATAG 1435
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1376 ACAACACCGTCGGAGTCAACCACGATCATTTCGTGACATTCCGTCTTGATCTTGATATCG 1435
Query 1436 ATGGTACGGAAAATTCATTTGTTCGTACCGAACTCGTGACCAAGAGGACTCCAAAATCTG 1495
||||||| || ||||| |||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 1436 ATGGTACCGATAATTCCTTTGTTCGTAACGAACTTGTGACTAAGAGGACTCCAAAATCTG 1495
Query 1496 TTAACACACCGAGAAAAAGCTATTGGACAACAAAACGAAACACAGCAAAAACCGAGGCAG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTAACACACCGAGAAAAAGCTATTGGACAACAAAACGAAACACAGCAAAAACCGAGGCAG 1555
Query 1556 ACGCTCGGGTGAAACTAGG-CTTGAGAGCGGAGGAGTTGGTGGTCGTTAACCCTACCaaa 1614
| ||||||||||||||||| || |||||| |||||||||||||| |||||||||| |||
Sbjct 1556 AGGCTCGGGTGAAACTAGGGCT-GAGAGCCGAGGAGTTGGTGGTGGTTAACCCTAATAAA 1614
Query 1615 aaaaCTAAGCATGGCAATGAGGTTGGATACCGTCTACTTCCTGGGCCGGCTTCAAGCCCA 1674
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1615 AAAACGAAGCATGGCAATGAGGTTGGATACCGTCTACTTCCTGGCCCGGCTTCAAGCTCA 1674
Query 1675 CTTCTTGTCCAAGATGACTACCCACAGATTCGGGCAGCATTCACCAACTACAACGTGTGG 1734
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 CTTCTTGCCCAAGATGACTACCCACAGATTCGGGCAGCATTCACCAACTACAACGTGTGG 1734
Query 1735 ATCACACCGTATAACAAATCGGAGGTTTGGGCTAGCGGTTTGTACGCTGATCGGAGCCAA 1794
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1735 ATCACGCCGTATAACAAATCGGAGGTTTGGACTAGCGGTTTGTACGCTGATCGGAGCCAA 1794
Query 1795 GGTGACGACACATTAGCCGTATGGTCCCAAAGAGATAGGGAAATAGAGAACAAAGATATA 1854
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1795 GGTGACGACACATTAGCCGTATGGTCCCAAAGAGATAGGGAAATAGAGAAGAAAGATATA 1854
Query 1855 GTGATGTGGTACACCGTTGGATTCCACCATGTCCCATGCCAAGAAGATTTTCCGACGATG 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 GTGATGTGGTACACCGTTGGATTCCACCATGTCCCATGCCAAGAAGATTTTCCGACGATG 1914
Query 1915 CCTACTATGTTTGGCGGCTTTGAACTTCGGCCAACCAACTTTTTCGAGCAAAATCCTGTT 1974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 CCTACTATGTTTGGCGGCTTTGAACTTCGGCCAACCAACTTTTTCGAGCAAAATCCTGTC 1974
Query 1975 CTCAAGGCTAAACCTTTCAATCTCACCACCATTCCAAAGTGTACTACGAAGA 2026
||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1975 CTCAAGGCTAAACCTATCAATCTCACCACCATTCCAAAATGTACTACGAAGA 2026
> Ahg922235 jgi|Araly1|922235|scaffold_103516.1
Length=2038
Score = 1393 bits (754), Expect = 0.0
Identities = 1239/1470 (84%), Gaps = 46/1470 (3%)
Strand=Plus/Plus
Query 576 ACCAATTGAAGGAATGACGATAATCGTTAACCTTGACCAGATGAAAGTAACGGGGTTCAA 635
||| |||||||||||||||||||||||||| |||||| ||||||| ||||||| ||| ||
Sbjct 552 ACCTATTGAAGGAATGACGATAATCGTTAATCTTGACGAGATGAAGGTAACGGAGTTTAA 611
Query 636 GGACAGGTTC-ACGGGTCCTATGCCGAAGGCTAACGGGA-GAGAGTACCGTATCTCAAAG 693
||||||| || | || | ||||||| ||||||||||| | | |||||||||||||| |||
Sbjct 612 GGACAGG-TCAATGGTTACTATGCCCAAGGCTAACGGAACG-GAGTACCGTATCTCGAAG 669
Query 694 CTCAAGCCGCCGTTTGGCCCGTCGCTTCGA-AGTGCCG-TCGTTTTCCAGCCGGACGGTC 751
| || || |||||||| || |||||| | | |||| || | || |||||||| ||||
Sbjct 670 ATGAACCCTCCGTTTGGGCCAACGCTTC-ACAACGCCGTTC-TCTTGCAGCCGGATGGTC 727
Query 752 CAGGGTTTAAGATCGATGGACACGTCGTGAG-A--TGGGCAAATTGGGAGTTTCACATGT 808
||||||| ||||||||||||||| | ||||| | |||||||||||||| |||||||| |
Sbjct 728 CAGGGTTCAAGATCGATGGACACATTGTGAGTATGTGGGCAAATTGGGAATTTCACATAT 787
Query 809 CATTTGACGTTCGAGCCGGTCTTGTCATCTCTCTCGCGTCCA-TTTTCGACATGGACATG 867
| |||||||||||||||||| | ||||||||||| || | || ||||||||| |||| ||
Sbjct 788 CGTTTGACGTTCGAGCCGGTATCGTCATCTCTCTTGCAT-CACTTTTCGACACGGACGTG 846
Query 868 AACAGATACCGGCAAGTCCTATACAAAGGTCATTTGTCGGAGATGTTCGTACCTTACATG 927
|||| ||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 847 AACAAATACCGGCAAGTCCTATACAAAGGTCACTTGTCGGAAATGTTCATACCTTACATG 906
Query 928 GACCCAAATGACGACTGGTACTTCATTAGTTACCTAGACTGTGGTGAATTT-GGCTGCGG 986
||||||| ||| || ||||| ||||||| ||| || || ||||| | |||| ||||||||
Sbjct 907 GACCCAAGTGATGATTGGTATTTCATTACTTATCTTGATTGTGGCG-ATTTCGGCTGCGG 965
Query 987 CCAA-ACTGCCGTATC-CCTTGAGCCGTATACTGATTGTCCCCCGAATGCCGCTTTCATG 1044
||| | ||||| || || | ||||||| ||||||||||| || ||| | |||||||
Sbjct 966 TCAATGC-GCCGTGTCTCC-TCAGCCGTACACTGATTGTCCAGCGGGTGCAGTTTTCATG 1023
Query 1045 GATGGCATCTTCCCGGGACAAGATGGAACTCCTACAAAAATATCGAATGTTATGTGCATT 1104
||||| || || | || |||||||||||||| ||||||| | || ||||||||||||
Sbjct 1024 GATGGTATTTTTGCTGGTCAAGATGGAACTCCCGCAAAAATCCCAAAAGTTATGTGCATT 1083
Query 1105 TTCGAAAAATATGCTGGAGACATTATGTGGCGACATACCGAAGCTGAAGTACCCG-GCTT 1163
|| ||||||||||||||||| || |||||||||||||| ||||||||| | |||| |||
Sbjct 1084 TTTGAAAAATATGCTGGAGATATCATGTGGCGACATACAGAAGCTGAAAT-CCCGAACTT 1142
Query 1164 AAAAATCACAGAGGTTAGACCAGATGTAAGTCTTGTAGCCCGGATGGTGACGACAGTGGG 1223
| |||| || |||||||||||||| |||||||||||||||||||| || ||||| |||||
Sbjct 1143 AGAAATTACGGAGGTTAGACCAGACGTAAGTCTTGTAGCCCGGATCGTAACGACCGTGGG 1202
Query 1224 GAACTACGACTACATCA-TCGAGTATGAGTTCAAACCAAGTGGTTCCATCAAAATGGGGG 1282
||||||||||||||| | | || || |||||||| || |||||||||||||| |||||||
Sbjct 1203 GAACTACGACTACAT-AGTTGATTACGAGTTCAAGCCTAGTGGTTCCATCAAGATGGGGG 1261
Query 1283 TCGGTTTAACCGGTGTTTTAGAAGTTAAACCTGTGGAATATGTTCACACATCAGAGATCA 1342
|||| |||||||||||||||||||| ||||| | |||||| ||||||||||||| ||||
Sbjct 1262 TCGGCTTAACCGGTGTTTTAGAAGTAAAACCAGCAGAATATATTCACACATCAGAAATCA 1321
Query 1343 AAG-A--AGACGACAT-CTACGGGACAATTGTTGCTGACAACACCGTCGGAGTTAACCAC 1398
||| | || ||||| | |||| |||||||| || ||||| ||||| || |||||||||
Sbjct 1322 AAGTAGGGGAGGACATAC-ACGGTACAATTGTGGCCGACAATACCGTTGGTGTTAACCAC 1380
Query 1399 GATCACTTCGTGACATTCCGTCTTGATCTTGATATAGATGGTACGGAAAATTCATTTGTT 1458
|| | || || |||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 1381 GACCGTTTTGTAACATTCCGTCTTGATCTTGACATTGATGGTACCGAAAATTCCTTTGTT 1440
Query 1459 CGTACCGAAC-TCGTGACCAAGAGGACTCCAAAATCTGTTAACACACCGAGAAAAAGCTA 1517
|||| ||||| | ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1441 CGTAACGAACGT-GTGACCACGAGGACTCCAAAATCTGTTAACACACCGAGAAAAACCTA 1499
Query 1518 TTGGACAACAAAACGAAACACAGCAAAAACCGAGGCAGACGCTCGGGTGAAACTAGGCTT 1577
|||||||| || | ||| || || || ||||||||||| |||||||||||| |||||||
Sbjct 1500 CTGGACAACGAAGCCAAAGACGGCCAAGACCGAGGCAGAAGCTCGGGTGAAAATAGGCTT 1559
Query 1578 GAGAGCGGAGGAGTTGGTGGTCGTTAACCCTA-CCaaaaaaaCTAAGCATGGCAATGAGG 1636
|| |||||||||| ||||||| |||||||||| || ||||| | ||||||||||||||||
Sbjct 1560 GAAAGCGGAGGAGCTGGTGGTGGTTAACCCTAACCGAAAAA-CGAAGCATGGCAATGAGG 1618
Query 1637 TTGGATACCGTCTACTTCCTGGG-CCGGCTTCAAGCCCACTTCTTG-TCCAAGATGACTA 1694
||||||||||| |||||| ||| ||| | || |||||||||| | |||| ||||| ||
Sbjct 1619 TTGGATACCGTTTACTTCATGGATCCGCCG-CAGGCCCACTTCTGGCTCCA-GATGATTA 1676
Query 1695 CCCACAGATTCGGGCAGCATTCACCAACTACAACGTGTGGATCACACCGTATAACAAATC 1754
||| |||||||| || |||||||||||||| |||||||||||||| |||||||||| ||
Sbjct 1677 CCCGCAGATTCGAGCTGCATTCACCAACTATAACGTGTGGATCACGCCGTATAACAGGTC 1736
Query 1755 GGAGGTTTGGGCTAGC-GGTTTGTACGCTGATC-GGAGCCAAGGTGACGACACATTAGCC 1812
|||||||||||| || |||||||||||||| | |||||||||| ||||| || || |||
Sbjct 1737 GGAGGTTTGGGC-AGGTGGTTTGTACGCTGA-CAGGAGCCAAGGCGACGATACGTTGGCC 1794
Query 1813 GTATGGTCCCAAAGAGA-TAGGGAAATAGAGAACAAAGATATAGTGATGTGGTACACCGT 1871
|| ||||| ||||| || ||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1795 GTGTGGTCTCAAAG-GAATAGAAAAATAGAGAAGAAAGATATAGTGATGTGGTACACCGT 1853
Query 1872 TGGATTCCACCATGTCCC-ATGCCAAGAAGATTTTCCGACGATGCCTACTATGTTTGGCG 1930
|| |||||||||||||| | |||| ||||||| || |||||||||||||| | ||| |
Sbjct 1854 CGGTTTCCACCATGTCCCTA-GCCAGGAAGATTACCCCACGATGCCTACTATATCTGGTG 1912
Query 1931 GCTTTGAACTTCGGCCAACCAACTT-TTTCGAGCAAAATCCTGTTCTCAAGGCTAAACCT 1989
||||||| || | || |||||||| ||| |||| ||| ||||| |||||| | |||||
Sbjct 1913 GCTTTGAGCTCCACCCGACCAACTTCTTT-GAGCGAAACCCTGTCCTCAAGACCAAACCC 1971
Query 1990 TTCAATCTCACCACCATTCCAAAGTGTACT 2019
|||| |||||||| || |||||| |||
Sbjct 1972 GTCAAGGTCACCACCGCTCGAAAGTGCACT 2001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5