BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31710.1
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922235 jgi|Araly1|922235|scaffold_103516.1 2244 0.0
Ahg313750 jgi|Araly1|313750|fgenesh1_pm.C_scaffold_1002530 1714 0.0
> Ahg922235 jgi|Araly1|922235|scaffold_103516.1
Length=2038
Score = 2244 bits (1215), Expect = 0.0
Identities = 1402/1492 (94%), Gaps = 13/1492 (1%)
Strand=Plus/Plus
Query 600 ACCTATTGAAGGAATGACGATAATCGTTAATCTTGATGAGATGAAGGTATCGGAGTTTAA 659
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 552 ACCTATTGAAGGAATGACGATAATCGTTAATCTTGACGAGATGAAGGTAACGGAGTTTAA 611
Query 660 GGACAGGTCAGTGGTTACTATGCCCATA-GCTAACGGAACGGAGTACCGTATCTCGAAGC 718
|||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 612 GGACAGGTCAATGGTTACTATGCCCA-AGGCTAACGGAACGGAGTACCGTATCTCGAAGA 670
Query 719 TTAACCCACCCTTTGGACCGACGCTTCATAACGCCGTCCTTTTGCAGCCGGATGGTCC-G 777
| ||||| || ||||| || |||||||| |||||||| || ||||||||||||||||| |
Sbjct 671 TGAACCCTCCGTTTGGGCCAACGCTTCACAACGCCGTTCTCTTGCAGCCGGATGGTCCAG 730
Query 778 GGCTTCAAGGTCGATGGACACATCGTGAG---GTGGGCAAATTGGGAATTTCACATATCG 834
|| |||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 731 GG-TTCAAGATCGATGGACACATTGTGAGTATGTGGGCAAATTGGGAATTTCACATATCG 789
Query 835 TTCGATGTTCGAGCTGGCATCGTCATATCTCTCGCATCCCTTTTCGACACGGACGTGAAC 894
|| || |||||||| || |||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 790 TTTGACGTTCGAGCCGGTATCGTCATCTCTCTTGCATCACTTTTCGACACGGACGTGAAC 849
Query 895 AAATACCGGCAAGTCCTATATAAAGGTCACTTATCGGAAATGTTCATACCTTACATGGAC 954
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 850 AAATACCGGCAAGTCCTATACAAAGGTCACTTGTCGGAAATGTTCATACCTTACATGGAC 909
Query 955 CCAAGTGATGATTGGTATTTCATTACTTATCTTGATTGTGGCGATTTTGGCTGCGGTCAA 1014
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 910 CCAAGTGATGATTGGTATTTCATTACTTATCTTGATTGTGGCGATTTCGGCTGCGGTCAA 969
Query 1015 TGCGCCGTATCTCTTCAACCGTACACTGATTGTCCAGCGGGTGCAGTTTTTATGGATGGT 1074
|||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 970 TGCGCCGTGTCTCCTCAGCCGTACACTGATTGTCCAGCGGGTGCAGTTTTCATGGATGGT 1029
Query 1075 ATTTTTGCTGGTCAAGATGGAACTCCCGCAAAAATCCCAAAAGTTATGTGCATTTTTGAA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 ATTTTTGCTGGTCAAGATGGAACTCCCGCAAAAATCCCAAAAGTTATGTGCATTTTTGAA 1089
Query 1135 AAATATGCTGGAGATATCATGTGGCGACATACAGAAGCTGAAATTCCAAACTTAGAAATT 1194
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1090 AAATATGCTGGAGATATCATGTGGCGACATACAGAAGCTGAAATCCCGAACTTAGAAATT 1149
Query 1195 ACGGAGGTTAGACCGGACGTAAGTCTTGTAGCCCGGATTGTGACGACCGTGGGAAACTAT 1254
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 1150 ACGGAGGTTAGACCAGACGTAAGTCTTGTAGCCCGGATCGTAACGACCGTGGGGAACTAC 1209
Query 1255 GACTACATAGTTGATTATGAGTTCAAGCCTAGTGGTTCCATCAAAATGGGGGTCGGCTTA 1314
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1210 GACTACATAGTTGATTACGAGTTCAAGCCTAGTGGTTCCATCAAGATGGGGGTCGGCTTA 1269
Query 1315 ACCGGTGTTTTAGAAGTGAAACCGGTAGAATATATTCACACATCCGAAATCAAACTAGGG 1374
||||||||||||||||| ||||| | |||||||||||||||||| ||||||||| |||||
Sbjct 1270 ACCGGTGTTTTAGAAGTAAAACCAGCAGAATATATTCACACATCAGAAATCAAAGTAGGG 1329
Query 1375 GAAGACATACACGGGACAATTGTCGCCGACAACACCGTCGGTGTTAACCACGACCATTTC 1434
|| ||||||||||| |||||||| |||||||| ||||| |||||||||||||||| |||
Sbjct 1330 GAGGACATACACGGTACAATTGTGGCCGACAATACCGTTGGTGTTAACCACGACCGTTTT 1389
Query 1435 GTGACATTCCGTCTTCATCTTGACATCGACGGTACCGAAAATTCCTTTGTTCGTAACGAA 1494
|| |||||||||||| |||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1390 GTAACATTCCGTCTTGATCTTGACATTGATGGTACCGAAAATTCCTTTGTTCGTAACGAA 1449
Query 1495 CTTGTGACCACGAGGTCTCCAAAATCTGTTAACACACCGAGAAAAACCTATTGGACAACG 1554
| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1450 CGTGTGACCACGAGGACTCCAAAATCTGTTAACACACCGAGAAAAACCTACTGGACAACG 1509
Query 1555 AAGCCAAAGACGGCCAAGACCGAGGCAGAGGCTCGGGTGAAACTAGGTTTGAAGGCGGAG 1614
||||||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||
Sbjct 1510 AAGCCAAAGACGGCCAAGACCGAGGCAGAAGCTCGGGTGAAAATAGGCTTGAAAGCGGAG 1569
Query 1615 GAGTTAGTTGTGGTTAACCCTAACCGAAAGACGAAGCATGGCAATGAGGTTGGATACCGT 1674
||| | || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1570 GAGCTGGTGGTGGTTAACCCTAACCGAAAAACGAAGCATGGCAATGAGGTTGGATACCGT 1629
Query 1675 TTACTTCATGGATCCGCTGCAGGCCCACTCCTGGC-CCAAGATGATTTCCCGCAGATTCG 1733
||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||||||
Sbjct 1630 TTACTTCATGGATCCGCCGCAGGCCCACTTCTGGCTCCA-GATGATTACCCGCAGATTCG 1688
Query 1734 AGCTGCATTCACCAACTATAACGTGTGGATCACGCCGTATAACAGGTCAGAGGTTTGGGC 1793
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1689 AGCTGCATTCACCAACTATAACGTGTGGATCACGCCGTATAACAGGTCGGAGGTTTGGGC 1748
Query 1794 AGGTGGTTTGTACGCTGACAGGAGCCAAGGCGACGATACGTTGGCAGTGTGGTCTCAAAG 1853
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1749 AGGTGGTTTGTACGCTGACAGGAGCCAAGGCGACGATACGTTGGCCGTGTGGTCTCAAAG 1808
Query 1854 GAATAGAAAAATAGAGAAGGAAGATATAGTGATGTGGTACACCGTCGGTTTCCACCATGT 1913
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 GAATAGAAAAATAGAGAAGAAAGATATAGTGATGTGGTACACCGTCGGTTTCCACCATGT 1868
Query 1914 TCCTAGCCAGGAAGATTACCCGACGATGCCTACTTTATCCGGTGGCTTTGAGCTCCGACC 1973
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||| |||
Sbjct 1869 CCCTAGCCAGGAAGATTACCCCACGATGCCTACTATATCTGGTGGCTTTGAGCTCC-ACC 1927
Query 1974 -GACCAACTT-TTTCGAGCGAAACCCTGTCCTCAAGACCAAACCCGTCAAAGTTACCACC 2031
||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1928 CGACCAACTTCTTT-GAGCGAAACCCTGTCCTCAAGACCAAACCCGTCAAGGTCACCACC 1986
Query 2032 GCTCGAAAGTGCACTCCTAAAAACGATTAATAAACAGCTTAATCATATCATT 2083
||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1987 GCTCGAAAGTGCACTCCTACAAACGATTAATAAACAGCTTAATCATATCATT 2038
Score = 693 bits (375), Expect = 0.0
Identities = 505/564 (90%), Gaps = 23/564 (4%)
Strand=Plus/Plus
Query 1 CTCACAAAGAACAATATGGCTCCACTTCACTTCACCATTCTCATCCTTTTCTCTTTCGTT 60
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 7 CTCACAAAGAACAACATGGTTCCACTTCACTTCACCATTCTCATCCTTTTCTCTTTCATT 66
Query 61 ATCGTAGTCTCATCCTCAAGCTTTACTCCACCGCGTCACCCATTTGATCCCTTAACCGAG 120
|||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 67 ATCGCAATCTCATCCTCAAGCTTCACTCCACCGCGTCACCCATTTGATCCCTTAACCGAG 126
Query 121 ACCGAACTCAAACTCGTCCGAACCATCATCAACAAGTCGTACCCCGTTGGTCCGAATCAT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 127 ACCGAACTCAAACTCGTCCGAACCATCATCAACAAGTCATACCCCGTTGGTCCAAACCAC 186
Query 181 AAGTTCACTTTCCAATACGTTGGTCTCAACGAACCCAACAAGTCTCTAGTCTTGTCTTGG 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 187 AAGTTCACTTTCCAATACGTTGGTCTCAACGAACCCGACAAGTCTCTAGTCTTGTCGTGG 246
Query 241 TACT-C--ATCACCGAATCATACCATCAAACCACCACCACGCCAAGCGTTCGTCATTGCT 297
|||| | ||||| ||| || |||||||||||||| ||||| ||||| |||||||| |||
Sbjct 247 TACTACTCATCACGGAACCACACCATCAAACCACCGCCACGTCAAGCATTCGTCATCGCT 306
Query 298 CGAGACAACGGAAAGAC-CAGAGAGATAGTCCTTGACTTTTCCTCTCGTGCCATCGTCTC 356
|||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||
Sbjct 307 AGAGACAACGGAAAGACAC-GAGAGATAGTCGTTGACTTTTCCTCTCGAGCCATCGTCTC 365
Query 357 GGACAAAATTCACGTAGGAAATGGTTACCCTATGCTCTCAAACGACGAGCAAGAAGCATC 416
|||||| |||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 366 GGACAAGATTCACATAGGAAATGGTTACCCTATGCTCTCAAACGACGAGC--------T- 416
Query 417 CACCGAGCTTGTTGTCAAGTTCAAGCCGTTTATTGACTCGGTCGCGAAACGTGGCTTAAA 476
| |||||||||||||| |||||| ||||||||| |||||||||||||| ||
Sbjct 417 --------T-GTTGTCAAGTTCAAACCGTTTCGTGACTCGGTAGCGAAACGTGGCTTGAA 467
Query 477 CGTTTCGGAGATCGTGTTCACGACGTCAACGATTGGATGGTACGGTGAGACTAAGGCCGA 536
||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct 468 CGTTTCGGAAATCGTGTTTACAACGTCAACCATTGGATGGTACGGAGAGACTAAGGCCGA 527
Query 537 GGCGGAGCGAGTTATTAGATTGAT 560
| ||||| ||||||||||||||||
Sbjct 528 GACGGAGAGAGTTATTAGATTGAT 551
> Ahg313750 jgi|Araly1|313750|fgenesh1_pm.C_scaffold_1002530
Length=2037
Score = 1714 bits (928), Expect = 0.0
Identities = 1703/2074 (82%), Gaps = 65/2074 (3%)
Strand=Plus/Plus
Query 16 ATGGCTCCACTTCACTTCACCATTC-TCATCCTTTTCTCTTTCGTTATCGTAGTCTCATC 74
||||||| | |||||||||||| || | || | ||| |||| | || ||||| |||| ||
Sbjct 1 ATGGCTCAAGTTCACTTCACCA-TCTTTAT-C-TTT-TCTTCCATTTTCGTAATCTCCTC 56
Query 75 CTCAAGCTTTACT-CCACCGCGTCACCCATTTGATCCCTTAACCGAGACCGAACTCAAAC 133
|| ||||| | | || ||| |||||| || |||||||| |||||||| ||||||||||
Sbjct 57 ATCGAGCTTCA-TCCCGGCGCCTCACCCCTTCGATCCCTTGACCGAGACTGAACTCAAAC 115
Query 134 TCGTCCGAACCATCATCAACAAGTCGTACCCCGTTGGTCCGAATCATAAGTTCACTTTCC 193
||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||
Sbjct 116 TCGTCCGAACCATCATCAATAAGTCGTACCCTATTGGTCATAACCATAAGTTCACTTTCC 175
Query 194 AATACGTTGGTCTCAACGAACCCAACAAGTCTCTAGTCTTGTCTTGGTACTCATCACCGA 253
||||||| ||||||||||| | | ||||||| |||||||| || ||| |||| ||||| |
Sbjct 176 AATACGTGGGTCTCAACGAGCTCGACAAGTCCCTAGTCTTATCGTGGCACTCCTCACC-A 234
Query 254 -ATCATACCATCAAACCACCACCACGCCAAGCGTTCGTCATTGCTCGAGACAACGGAAAG 312
|| | | |||||||||||||||| ||||| || |||||||| ||||| || || |||
Sbjct 235 GGCCACAACGTCAAACCACCACCACGTCAAGCTTTTGTCATTGCCCGAGATAAGGGCAAG 294
Query 313 A-CCAGAGAGATAGTCCTTGACTTTTCCTCTCGTGCCATCGTCTCGGACAAAATTCACGT 371
| || ||||||| || ||||||||||| |||| ||||| |||| |||| || |||||
Sbjct 295 AGCC-GAGAGATCGTTGTTGACTTTTCCACTCGAGCCATTATCTCCAACAAGATCCACGT 353
Query 372 AGGAAATGGTTACCCTATGCTCTCAAACGACGAGCAAG-AAGCATCCACCGAGCTTGTTG 430
||| |||||| |||||| |||| | | ||||||| || ||||| |||||| |||||||
Sbjct 354 AGGCAATGGTAACCCTAAGCTCACTATTGACGAGC-AGCAAGCAGCCACCGCGCTTGTTC 412
Query 431 TCAAGTTCAAGCCGTTTAT-TGACTCGGTCGCGAAACGTGGCTTAAACGTT-TCGG-AGA 487
| |||||||||||| || | ||||||| | | |||||| ||||| ||| || |||| ||
Sbjct 413 TTAAGTTCAAGCCG-TTCTGTGACTCGATAGTGAAACGCGGCTTGAAC-TTGTCGGAAG- 469
Query 488 TCGTGTTCACGACGTCAACGATTGGATGGTACGGTGAGACTAAGGCCGAGGCGGAGCGAG 547
| ||| ||||| | || ||||| ||||||| ||||||| || | || | || | |
Sbjct 470 TTGTGGTCACGTCCTCCACGATGGGATGGTTCGGTGAG---AA-G--AAGACAAAGAG-G 522
Query 548 TT-ATTAGATTGATGCCGTTTTATCTTGACGGCA-CCGTTAATATGTATCTTAGACCTAT 605
|| || ||| ||| || |||||||| |||| | | || || | |||||||||||| ||
Sbjct 523 TTGATAAGAACGATACCCTTTTATCTAAACGG-ATCGGTGAACACGTATCTTAGACCAAT 581
Query 606 TGAAGGAATGACGATAATCGTTAATCTTGATGAGATGAAGGTATCGGAGTTTAAGGACAG 665
|||||| ||||||||||||||||| ||||| ||||||| ||| ||||||| ||||||||
Sbjct 582 TGAAGGCATGACGATAATCGTTAACCTTGACCAGATGAAAGTAGCGGAGTTCAAGGACAG 641
Query 666 -GTCAGTGGTTACTATGCCCATA-GCTAACGGAACG-GAGTACCGTATCTCGAAGCTTAA 722
||| || | ||||| ||| | ||| |||| | | |||||||||||||| ||||| ||
Sbjct 642 ATTCA-CGGGTCCTATG-CCAAAGGCTGACGGGA-GAGAGTACCGTATCTCAAAGCTCAA 698
Query 723 CCCACCCTTTGGACCGACGCTTCATAA-CGCCGTCCTTTT-GCAGCCGGATGGTCCGGGC 780
|| || ||||| ||| | |||| || ||||| ||||| |||||||| ||||| ||
Sbjct 699 GCCGCCGTTTGGCCCGTCACTTC-GAAGTGCCGT-CTTTTACCAGCCGGACGGTCCAGGA 756
Query 781 TTCAAGGTCGATGGACACATCGTGAGGTGGGCAAATTGGGAATTTCACATATCGTTCGAT 840
|| ||| ||||||||||| ||||||| ||||||||||||||||||||||| || || ||
Sbjct 757 TTTAAGATCGATGGACACGTCGTGAGATGGGCAAATTGGGAATTTCACATGTCATTTGAC 816
Query 841 GTTCGAGCTGG-CATCGTCATATCTCTCGCATCCCTTTTCGACACGGACGTGAACAAATA 899
|||||||| || | | ||||| |||||||| ||| ||||||||| |||| ||||||||||
Sbjct 817 GTTCGAGCCGGTC-TTGTCATCTCTCTCGCGTCCATTTTCGACATGGACATGAACAAATA 875
Query 900 CCGGCAAGTCCTATATAAAGGTCACTTATCGGAAATGTTCATACCTTACATGGACCCAAG 959
||||||||||||||| ||||| || || ||||| |||||| ||||||||||||||||||
Sbjct 876 CCGGCAAGTCCTATACAAAGGCCATTTGTCGGAGATGTTCGTACCTTACATGGACCCAAA 935
Query 960 TGATGATTGGTATTTCATTACTTATCTTGATTGTGGCGATTTTGGCTGCGGTCAATGC-G 1018
|||||| ||||| ||||| | ||| || || ||||| || ||||||||||| |||| | |
Sbjct 936 TGATGACTGGTACTTCATCAGTTACCTAGACTGTGGTGAATTTGGCTGCGGGCAAT-CTG 994
Query 1019 CCGTATCTCTTCAACCGTACACTGATTGTCCAGCGGGTGCAGTTTTTATGGATGGTATTT 1078
|||| || ||| | ||||| || |||||||| | ||| | || || ||||| | |
Sbjct 995 CCGTGTCCCTTGAGCCGTATACCGATTGTCCCCCAAATGCCGCCTTCATAGATGGCGTCT 1054
Query 1079 TTGCTGGTCAAGATGGAACTCCCGCAAAAATCCCAAAAGTTATGTGCATTTTTGAAAAAT 1138
|||| || |||||||||||||| ||||| | | || |||||||||||||| |||||||
Sbjct 1055 TTGCGGGACAAGATGGAACTCCTACAAAAGTATCGAATGTTATGTGCATTTTCGAAAAAT 1114
Query 1139 ATGCTGGAGATATCATGTGGCGACATACAGAAGCTGAAATTCCAAACTTAGAAATTACGG 1198
|||||||||| || |||||||||||||| ||||||||| | || |||| |||| || |
Sbjct 1115 ATGCTGGAGACATTATGTGGCGACATACCGAAGCTGAAGTACCCGGCTTAAAAATCACAG 1174
Query 1199 AGGTTAGACCGGACGTAAGTCTTGTAGCCCGGATTGTGACGACCGTGGGAAACTATGACT 1258
|||||||||| || |||||||||||||||||||| |||||||| ||||| ||||| || |
Sbjct 1175 AGGTTAGACCAGATGTAAGTCTTGTAGCCCGGATGGTGACGACAGTGGGGAACTACGATT 1234
Query 1259 ACAT-AGTTGATTATGAGTTCAAGCCTAGTGGTTCCATCAAAATGGGGGTCGGCTTAACC 1317
|||| | |||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1235 ACATCA-TTGAGTATGAGTTCAAACCTAGCGGTTCCATCAAAATGGGGGTCGGTTTAACC 1293
Query 1318 GGTGTTTTAGAAGTGAAACCGGTAGAATATATTCACACATCCGAAATCAAACTAGGGGAA 1377
|||||||||||||| ||||| || |||||| |||||||||| || ||| ||| | ||
Sbjct 1294 GGTGTTTTAGAAGTTAAACCCGTGGAATATGTTCACACATCAGAGATC-AAC--GAAGAC 1350
Query 1378 GACATAC-ACGGGACAATTGTCGCCGACAACACCGTCGGTGTTAACCACGACCATTTCGT 1436
||||| | ||||||||||||| || |||||||||||||| || |||||||| ||||||||
Sbjct 1351 GACAT-CTACGGGACAATTGTTGCTGACAACACCGTCGGAGTCAACCACGATCATTTCGT 1409
Query 1437 GACATTCCGTCTTCATCTTGACATCGACGGTACCGAAAATTCCTTTGTTCGTAACGAACT 1496
||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 1410 GACATTCCGTCTTGATCTTGATATCGATGGTACCGATAATTCCTTTGTTCGTAACGAACT 1469
Query 1497 TGTGACCACGAGGTCTCCAAAATCTGTTAACACACCGAGAAAAACCTATTGGACAACGAA 1556
|||||| | |||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1470 TGTGACTAAGAGGACTCCAAAATCTGTTAACACACCGAGAAAAAGCTATTGGACAACAAA 1529
Query 1557 GCCAAAGACGGCCAAGACCGAGGCAGAGGCTCGGGTGAAACTAGGTTTGAAG-GCGGAGG 1615
| ||| || || || ||||||||||||||||||||||||||||| || || || ||||
Sbjct 1530 ACGAAACACAGCAAAAACCGAGGCAGAGGCTCGGGTGAAACTAGGGCTG-AGAGCCGAGG 1588
Query 1616 AGTTAGTTGTGGTTAACCCTAACCGAAAGACGAAGCATGGCAATGAGGTTGGATACCGTT 1675
|||| || |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1589 AGTTGGTGGTGGTTAACCCTAATAAAAAAACGAAGCATGGCAATGAGGTTGGATACCGTC 1648
Query 1676 TACTTCATGGATCCG-CTGCAGGCCCACTCCTGGCCCAAGATGATTTCCCGCAGATTCGA 1734
|||||| ||| ||| || || || |||| || ||||||||||| | ||| ||||||||
Sbjct 1649 TACTTCCTGGC-CCGGCTTCAAGCTCACTTCTTGCCCAAGATGACTACCCACAGATTCGG 1707
Query 1735 GCTGCATTCACCAACTATAACGTGTGGATCACGCCGTATAACAGGTCAGAGGTTTGGGC- 1793
|| |||||||||||||| ||||||||||||||||||||||||| || ||||||||| |
Sbjct 1708 GCAGCATTCACCAACTACAACGTGTGGATCACGCCGTATAACAAATCGGAGGTTTGGACT 1767
Query 1794 AGGTGGTTTGTACGCTGA-CAGGAGCCAAGGCGACGATACGTTGGCAGTGTGGTCTCAAA 1852
|| |||||||||||||| | |||||||||| ||||| || || || || ||||| ||||
Sbjct 1768 AGC-GGTTTGTACGCTGATC-GGAGCCAAGGTGACGACACATTAGCCGTATGGTCCCAAA 1825
Query 1853 G-GAATAGAAAAATAGAGAAGGAAGATATAGTGATGTGGTACACCGTCGGTTTCCACCAT 1911
| || ||| ||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct 1826 GAGA-TAGGGAAATAGAGAAGAAAGATATAGTGATGTGGTACACCGTTGGATTCCACCAT 1884
Query 1912 GTTCC-TAGCCAGGAAGATTACCCGACGATGCCTACTTTATCCGGTGGCTTTGAGCTCCG 1970
|| || | |||| ||||||| ||||||||||||||| | | || |||||||| || ||
Sbjct 1885 GTCCCAT-GCCAAGAAGATTTTCCGACGATGCCTACTATGTTTGGCGGCTTTGAACTTCG 1943
Query 1971 ACCGACCAACTTTTTCGAGCGAAACCCTGTCCTCAAGACCAAACCCGTCAAAGTTACCAC 2030
|| |||||||||||||||| ||| |||||||||||| | ||||| |||| | |||||
Sbjct 1944 GCCAACCAACTTTTTCGAGCAAAATCCTGTCCTCAAGGCTAAACCTATCAATCTCACCAC 2003
Query 2031 CGCTCGAAAGTGCACTCCTAA-A--AACGATTAA 2061
| || ||| || ||| | || | |||||||||
Sbjct 2004 CATTCCAAAATGTACTACGAAGAGGAACGATTAA 2037
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83112914590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5