BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31720.1
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473357 jgi|Araly1|473357|fgenesh2_kg.1__3311__AT1G31720.1 758 0.0
> Ahg473357 jgi|Araly1|473357|fgenesh2_kg.1__3311__AT1G31720.1
Length=687
Score = 758 bits (410), Expect = 0.0
Identities = 594/677 (88%), Gaps = 36/677 (5%)
Strand=Plus/Plus
Query 1 CTCTGTAATCGTGGAGTAGGTCTCAAGCAATCTCGTCTTCCCTCTAAAGGGATTTAAGAA 60
||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 1 CTCTGTAATTGTGGAGTAGGTCTCAAGTAATCTCGTCTTCCCTCTTAGGGGATTTAAGAA 60
Query 61 CAAATCAATGGAAATTCAAAAACAAGATAACCGGGATGGGCGACCCAAATCTTT-TCTCT 119
|||||||||||| ||||| ||||| |||||||| |||||| |||||||| ||| | |||
Sbjct 61 AAAATCAATGGAAGTTCAAGAACAATATAACCGGAATGGGCTACCCAAAT-TTTCTATCT 119
Query 120 TTTTCATGTTCATCTTTCTCTTTGGTCTCG-CGGCGTTCTTCCTATGCCTTTCGGCCGAG 178
||||||||||||| |||||||||||||||| | || ||||||| || | |||
Sbjct 120 TTTTCATGTTCATATTTCTCTTTGGTCTCGTC-GCATTCTTCC--TG----T--GCC--- 167
Query 179 TTTCAAAAGGCTAAGGCTTTGCTAAGAGCTCAGGTTTTCTTAAAGGGGAAAGATCTGAAA 238
|||| ||| | | ||| | || | ||| | | ||||||||||||||||||
Sbjct 168 TTTC----GGCCGA-G-TTT-C-AA-A----AGG----C-T-AAGGGGAAAGATCTGAAA 208
Query 239 TGGGATGGAGAATCGTGTTATTTACCAGAAAATCGTGCTTTCGGGCTAGGAATTGCTGCT 298
|||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||
Sbjct 209 TGGGATGGAGAATCGTGTTATTTACCCGAGAATCATGCTTTCGGGTTAGGAATTGCTGCT 268
Query 299 TTGGTCTGTGTTTCCGTTGCTCAGATCGTCGGAAACGTTGTGATCTGTAGAGGTTTCACG 358
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 269 TTGGCCTGTGTTTCTGTTGCTCAGATCGTCGGAAACGTTGTGATCTGTAGAGGTTTCTTG 328
Query 359 AAAACGGACAAAACCAGAACGACTA-TATTTTGTATAATTCTTCTGTTGTTTTCTTGGGT 417
|||||| |||||||| ||||||| | | || |||||||||||||||||||||||||||||
Sbjct 329 AAAACGAACAAAACCGGAACGAC-ACTGTTATGTATAATTCTTCTGTTGTTTTCTTGGGT 387
Query 418 TAATTTTGCCGTTGCGGTTACGTTGATAAGCGTTGGTGCAAGCATGAATAGAGAGCAGAT 477
||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 388 TAATTTTGCGGTTGCGGTTATATTGATAAGTGTTGGTGCAAGCATGAACAGAGAGCAGAG 447
Query 478 ATACGGCAAAGGGTGGCTAAACCGTGAGTGTTACCTTGTGAAAGACGGTGTGTTCGCAGC 537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 448 ATACGGCAAAGGGTGGCTAAACCGTGAGTGTTACCTTGTGAAAGACGGAGTGTTCTCAGC 507
Query 538 GTCTGGCTTTCTCTCCGTTACGACGATGGCCGCTATTCTCGGAGCGTTTGCGTTTAAAGT 597
||||||| |||| | |||||| ||| ||||||||||||| ||||||||||| |||| |||
Sbjct 508 GTCTGGCGTTCTGTGCGTTACAACGCTGGCCGCTATTCTTGGAGCGTTTGCTTTTAGAGT 567
Query 598 CAAACCATCATTACAGGTCGAGAATCATGACAAACGTCACACTCAAAATGTGTAGTAGTT 657
|||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 568 AAAACCATCATTACAGGTCGACACTCATGACAAACGTCACACCCAAAATGTGTAGTAGTT 627
Query 658 TGAAAATTAAGTAGAAA 674
|||||||||||||||||
Sbjct 628 TGAAAATTAAGTAGAAA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28515941916
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5