BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31740.1
Length=2361
Score E
Sequences producing significant alignments: (Bits) Value
Ahg313754 jgi|Araly1|313754|fgenesh1_pm.C_scaffold_1002534 3013 0.0
Ahg481656 jgi|Araly1|481656|fgenesh2_kg.4__716__AT2G28470.1 211 2e-53
> Ahg313754 jgi|Araly1|313754|fgenesh1_pm.C_scaffold_1002534
Length=2343
Score = 3013 bits (1631), Expect = 0.0
Identities = 1842/1945 (95%), Gaps = 10/1945 (1%)
Strand=Plus/Plus
Query 70 ATGGTTTCTCT-AAGTTTTATTTTGTGTTGTGTTTTAGTAAGTAGTTGTGCATACGCCAC 128
||| ||||||| ||| ||| ||||||||||| | ||||| |||||||||||||| |||||
Sbjct 4 ATGATTTCTCTAAAG-TTTCTTTTGTGTTGTCTCTTAGTGAGTAGTTGTGCATATGCCAC 62
Query 129 AATCGTCTCTCATGATGGTCGTGCCATCACTATTGATGGTCATCGTCGAGTTCTTCTCTC 188
|||||||||||| || || |||||||||||||||||||| ||||| || |||||||||||
Sbjct 63 AATCGTCTCTCACGACGGCCGTGCCATCACTATTGATGGCCATCGCCGTGTTCTTCTCTC 122
Query 189 TGGTTCTATCCATTATCCTAGAAGCACCACTGAGATGTGGCCGGATCTTATAAAGAAGGG 248
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGGTTCTATCCATTACCCGAGAAGCACCACTGAGATGTGGCCGGATCTTATAAAGAAGGG 182
Query 249 CAAAGAAGGAAGTCTTGATGCGATCGAGACTTATGTTTTTTGGAATGCACATGAACCTAC 308
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 183 AAAAGAAGGAGGTCTTGATGCGATCGAGACTTATGTGTTTTGGAATGCACATGAACCTAC 242
Query 309 TCGTCGTCAATATGATTTCTCTGGAAATCTAGATCTTATTCGGTTCTTGAAAACCATTCA 368
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCGTCGTCAGTATGATTTCTCTGGAAATCTAGATCTTATTCGGTTCTTGAAAACCATTCA 302
Query 369 AAATGAAGGAATGTATGGAGTTCTTCGCATAGGACCATATGTTTGCGCAGAGTGGAACTA 428
| ||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||
Sbjct 303 AGATGAAGGAATGTATGGAGTTCTTCGTATTGGACCATACGTTTGCGCTGAGTGGAACTA 362
Query 429 CGGAGGATTTCCAGTGTGGCTT-CACAACATGCCCGGAATGGAATTCAGAACTACTAATA 487
||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 363 CGGAGGATTTCCAGTGTGG-TTGCACAACATGCCCGGAATGGAATTTAGAACTACTAATA 421
Query 488 CTGCGTTTATGAATGAGATGCAAAATTTTACGACAATGATAGTAGAAATGGTCAAGAAAG 547
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 422 CTGCATTTATGAATGAGATGCAAAATTTTACGACTATGATAGTAGAAATGGTCAAGAAAG 481
Query 548 AGAAGCTTTTTGCATCACAAGGAGGTCCAATTATCCTTGCTCAGATTGAGAATGAATATG 607
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 482 AGAAGCTATTTGCATCACAAGGAGGTCCAATTATCCTTGCTCAGATTGAAAATGAGTATG 541
Query 608 GAAATGTGATTGGATCATATGGAGAAGCGGGTAAAGCATATATTC-AGTGGTGTGCAAAC 666
||||||||||||||||||| |||||||| ||||| ||||||| || ||||||||||||||
Sbjct 542 GAAATGTGATTGGATCATACGGAGAAGCCGGTAAGGCATATA-TCAAGTGGTGTGCAAAC 600
Query 667 ATGGCTAATTCTCTTGATGTTGGTGTTCCGTGGATCATGTGTCAACAAGATGATGCTCCT 726
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 ATGGCTAATTCTCTTGATGTTGGTGTTCCATGGATCATGTGTCAACAAGATGATGCTCCT 660
Query 727 CAACCAATGTTAAACACATGCAATGGTTATTATTGTGATAACTTTTCACCAAACAACCCC 786
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 661 CAACCTATGTTAAACACATGCAATGGTTATTATTGTGACAACTTTACACCAAACAACCCC 720
Query 787 AACACTCCAAAAATGTGGACTGAGAATTGGACCGGCTGGTATAAGAATTGGGGAGGTAAA 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AACACTCCAAAAATGTGGACTGAGAATTGGACCGGCTGGTATAAGAATTGGGGAGGTAAA 780
Query 847 GATCCTCACAGAACAACCGAAGATGTTGCTTTTGCCGTTGCAAGATTTTTCCAAAAAGAA 906
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 781 GATCCTCACAGAACAACCGAAGATGTTGCTTTTGCCGTTGCAAGATTCTTCCAAAGAGGA 840
Query 907 GGAACTTTCCAGAACTATTACATGTATCATGGAGGTACCAACTTTGATAGAACTGCGGGT 966
||||||||||||||||| |||||||| ||||| || ||||||||||||||||| || |||
Sbjct 841 GGAACTTTCCAGAACTACTACATGTACCATGGGGGCACCAACTTTGATAGAACCGCAGGT 900
Query 967 GGTCCGTACATCACAACAACATATGATTACGATGCTCCTCTTGACGAATTTGGTAATTTG 1026
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 GGTCCGTACATCACAACAACATATGATTACGATGCTCCTCTTGATGAATTTGGTAATTTG 960
Query 1027 AACCAACCAAAATACGGACACCTGAAACAGCTTCATGATGTTCTTCATGCTATGGAGAAA 1086
||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 961 AACCAACCAAAATACGGACACCTCAAACAGCTTCACGATGTTCTTCACGCTATGGAGAAA 1020
Query 1087 ACTCTCACTTATGGAAACATTTCCACCGTTGATTTTGGAAATTTAGTCACGGCAACAGTT 1146
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1021 ACTCTCACGTATGGAAACATTTCCACCGTTGATTTTGGAAACTTAGTCACGGCAACGGTT 1080
Query 1147 TATCAAACAGAAGAAGGATCAAGTTGTTTCATTGGAAACGTTAATGAAACGTCAGATGCA 1206
||| |||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 1081 TATAAAACAGAAGAAGGATCAAGTTGTTTCATTGGAAATGTAAATGAAACTTCAGATGCG 1140
Query 1207 AAAATCAATTTCCAAGGAACATCTTATGATGTCCCGGCTTGGTCTGTGAGCATTTTACCG 1266
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAATCAATTTCCAAGGAACATTTTATGATGTCCCGGCTTGGTCTGTGAGCATTTTACCG 1200
Query 1267 GATTGCAAAACTGAGACTTATAATACCGCCAAGATTAACACTCAAACTTCGGTGATGGTT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GATTGCAAAACTGAGACTTATAATACCGCCAAGATTAACACTCAAACTTCGGTGATGGTT 1260
Query 1327 AAGAAAGCGAATGAAGCTGAGAACGAGCCTTCGACTTTGAAATGGTCATGGAGACCAGAG 1386
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 AAGAAAGCGAATGAAGCTGAGAATGAGCCTTCGACTTTGAAATGGTCATGGAGACCAGAG 1320
Query 1387 AACATCGACAGTGTCCTCTTGAAAGGGAAAGGAGAATCTACAATGAGACAGTTGTTTGAT 1446
||||| |||| ||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 1321 AACATAGACAATGTCCTCTTGAAAGGAAAAGGAGAGTCTACAATGAGACAATTGTTTGAT 1380
Query 1447 CAGAAAGTAGTAAGCAATGACGAAAGTGATTATCTTTGGTACATGACTACGGTTAATCTC 1506
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1381 CAGAAAGTAGTAAGCAATGACGAAAGCGATTATCTTTGGTACATGACTACGGTTAATATC 1440
Query 1507 AAAGAACAAGATCCGGTTTTGGGGAAAAATATGTCTCTTCGTATCAACAGTACTGCTCAT 1566
||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||
Sbjct 1441 AAAGAACAAGATCCGGTTTGGGGGAAAAACATGTCTCTTCGTATTAATAGTACTGCTCAT 1500
Query 1567 GTTCTTCACGCTTTTGTCAATGGACAACATATTGGTAATTATCGCGTTGAAAATGGAAAG 1626
||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1501 GTTCTTCACGCTTTTGTGAATGGACAGCATATTGGTAATTATCGCGCAGAAAATGGAAAG 1560
Query 1627 TTTCACTATGTTTTTGAGCAAGACGC-AAAGTTCAACCCTGGTGCTAATGTCATTACTCT 1685
|||||||||||||| ||||||||||| ||| |||||||| |||||||| ||||| || ||
Sbjct 1561 TTTCACTATGTTTTCGAGCAAGACGCGAAA-TTCAACCCCGGTGCTAACGTCATCACGCT 1619
Query 1686 CCTTAGCATAACCGTAGGCCTTCCGAACTATGGTGCTTTCTTCGAAAACTTTTCGGCTGG 1745
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1620 CCTTAGCATAACCGTAGGCCTTCCGAACTATGGTGCTTTCTTCGAAAACGTTCCGGCTGG 1679
Query 1746 AATCACTGGACCCGTTTTTATCATTGGAAGAAATGGTGATGAAACTATAGTTAAAGATTT 1805
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1680 AATCACTGGACCCGTTTTTATCATTGGAAGAAATGGTGATGAAACCATAGTAAAAGACTT 1739
Query 1806 GTCTACTCATAAATGGAGTTACAAAACTGGTTTAAGCGGGTTTGAGAACCAACTCTTTAG 1865
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GTCTACTCATAAATGGAGCTACAAAACTGGTTTAAGCGGGTTTGAGAACCAACTCTTTAG 1799
Query 1866 TTCAGAATCACCTTCGACATGGTCAGCTCCTTTGGGAAGTGAACCAGTTGTGGTCGATCT 1925
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TTCAGAATCGCCTTCTACATGGTCAGCTCCTTTGGGAAGTGAACCAGTTGTGGTCGATCT 1859
Query 1926 TTTGGGACTTGGAAAAGGAACGGCTTGGATCAATGGAAATAACATTGGACGTTACTGGCC 1985
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1860 TTTGGGACTTGGAAAAGGAACGGCTTGGATCAATGGGAACAACATTGGACGTTATTGGCC 1919
Query 1986 AGCTTTTCTCT-CAGACATAGATGG 2009
||||||||| | |||| || |||||
Sbjct 1920 AGCTTTTCT-TGCAGATATTGATGG 1943
Score = 516 bits (279), Expect = 3e-145
Identities = 333/359 (93%), Gaps = 4/359 (1%)
Strand=Plus/Plus
Query 2005 GATGGAGACAACACCTTGGTTTTGTTTGAAGAGATTGGAGGAAACCCCTCACTTGTCAAT 2064
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1987 GATGGAGACAACACGTTGGTGTTGTTTGAAGAGATTGGAGGAAACCCATCACTTGTCAAT 2046
Query 2065 TTTCAAACAATTGGAGTTGGAAGTGTTTGTGCAAATGTCTATGAGAAGAACGTTCTTGAG 2124
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2047 TTTCAGACAATTGGAGTCGGAAATGTTTGTGCAAATGTCTATGAGAAGAACGTTCTTGAG 2106
Query 2125 CTTTCATGCAATGGAAAACCGATTT-CTGCCATCAAATTTGCTTCCTTTGGTAACCCAGG 2183
||||| |||||||||||||| |||| || |||||||||||||||| ||||||||||| ||
Sbjct 2107 CTTTCGTGCAATGGAAAACCCATTTCCT-CCATCAAATTTGCTTCTTTTGGTAACCCGGG 2165
Query 2184 AGGCGATTGCGGATCTTTTGAGAAAGGAACTTGTGAAGCAAGCAACAATGCTGCGGCTAT 2243
|||| |||||||||| |||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 2166 AGGCAATTGCGGATCCTTTGAGAAAGGAACTTGTGAAGCAAGTAACGATGCTGCCGCTAT 2225
Query 2244 CCTCACCCAAGAATGTGTTGGAAAAGAAAAGTGTTCCATTGATGTTTCCGAGGATAAGTT 2303
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct 2226 CCTCACCCAAGAATGTGTTGGAAAAGAAAAGTGTTCCATTGATGTCTCCGAGAAAAAGTT 2285
Query 2304 TGGAGCAGCGGAGTGTGGTGCT-TTGGCTAAGAGACTCGCCGTCGAAGCTATTTGCTAG 2361
|||||||||||| ||||||| | ||| |||||||||| || ||||||||||||||||||
Sbjct 2286 TGGAGCAGCGGACTGTGGTGGTCTTG-CTAAGAGACTTGCTGTCGAAGCTATTTGCTAG 2343
> Ahg481656 jgi|Araly1|481656|fgenesh2_kg.4__716__AT2G28470.1
Length=2779
Score = 211 bits (114), Expect = 2e-53
Identities = 493/669 (74%), Gaps = 54/669 (8%)
Strand=Plus/Plus
Query 406 TATGTTTGCGCAGAGTGGAACTACGGAGGATTT-CCAGTGTGGCTTCACAACATG--CCC 462
|||||||| || || ||||| ||||| || ||| ||||||||| || || || ||
Sbjct 561 TATGTTTGTGCTGAATGGAATTACGGTGG-TTTCCCAGTGTGG-TT-GCATTTTGTTCCT 617
Query 463 GGAATGGAA--TTCAGAACT-ACTAAT--ACTGCGTTTATGAATGAGATGCA-AAATTTT 516
||||| || ||| ||||| | |||| || |||||| | | || ||||| | | |||
Sbjct 618 GGAAT-TAAGTTTC-GAACTGA-TAATGAAC--CGTTTAAGGAGGAAATGCAGAGA-TTT 671
Query 517 ACGACAATGATAGTAGAAATGGTCAAGAAAGAGAAGCTTTTTGCATCACAAGGAGGTCCA 576
|| |||| ||| || || || | ||| |||| ||||||| ||||||||||||||| |||
Sbjct 672 ACCACAAAGATTGTTGATTTGATGAAGCAAGAAAAGCTTTATGCATCACAAGGAGGGCCA 731
Query 577 ATTATCCT-TGCTCAGATTGAGAATGAATATGGAAATG-TGATTGGATCATATGGAGAAG 634
||||| || | | ||||||||||||||||| ||||||| ||||| | | ||||| | |
Sbjct 732 ATTATTCTCT-CACAGATTGAGAATGAATACGGAAATGTTGATT-CAGCTTATGGCGCCG 789
Query 635 CGG-GTAAAGCATATATTC-AGTGGTGTGCAAAC-ATGGCTAATTCTC-TT-GATGTTGG 689
||| | |||| |||| || |||||| ||| | |||||| || || || ||| |||
Sbjct 790 CGGCGAAAAG-TTATA-TCAAGTGGTCTGC-TTCTATGGCT-CTT-TCGTTAGATACTGG 844
Query 690 TGTTCCGTGGATCATGTGTCAACAAG-ATGATGCTCCTCAACCAATGTTAAACACATGCA 748
|| || |||| |||||||||||||| | ||||||||| | || ||| | ||||||||||
Sbjct 845 AGTACCATGGAACATGTGTCAACAAGCA-GATGCTCCTGATCCCATGATCAACACATGCA 903
Query 749 ATGGTTAT-TATTGTGATAACTTTTCACC-AA-ACAACCCCAACACTCCAAAAATGTGGA 805
|||||| | || ||||| | ||| | || || ||| ||| | ||||| |||||||
Sbjct 904 ATGGTT-TCTACTGTGACCAGTTTACTCCTAACTCAA--ACAATAAACCAAAGATGTGGA 960
Query 806 CTGAGAATTGGACCGGCTGG-T-ATAAGAATTGGGGAGGTAAAGATCCTCACAGAACA-A 862
| ||||| |||| || ||| | | | || |||| | |||| |||| ||
Sbjct 961 CAGAGAACTGGAGTGGATGGTTCCT-TG-GTTTTGGAGATCCTTCTCCTTACAGGCCAGT 1018
Query 863 CCGAAGATGTTGCTTTTGCCGTTGCAAGATTTTTCCAAAAAGAAGGAACTTTCCAGAACT 922
| ||||| |||| ||||| || ||| | |||| |||| || ||||||||||||||||
Sbjct 1019 TC-AAGATCTTGCATTTGCAGTCGCACGGTTTTACCAACGAGGTGGAACTTTCCAGAACT 1077
Query 923 ATTACATGTATCATGGAGGTACCAACTTTGATAGAACT-GCGGGTGGTCCGT-ACATCAC 980
||||||||||||| || || || |||||||||||||| | || || || | | ||| |
Sbjct 1078 ATTACATGTATCACGGTGGAACAAACTTTGATAGAACAAGTGGA-GGACCTTTA-ATCTC 1135
Query 981 AACAACATATGATTACGATGCTCCTCTTGACGAATTTGGTAATT-TGA-ACCAACCAAAA 1038
|| | |||||||| |||||||| |||| || | ||| | || | | || ||||||||
Sbjct 1136 TACTAGTTATGATTATGATGCTCCAATTGATGAGTATGG-ACTTCTTAGAC-AACCAAAA 1193
Query 1039 TACGGACAC 1047
| ||||||
Sbjct 1194 TGGGGACAC 1202
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88940722075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5