BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31750.1
Length=727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473360 jgi|Araly1|473360|fgenesh2_kg.1__3314__AT1G31750.1 905 0.0
> Ahg473360 jgi|Araly1|473360|fgenesh2_kg.1__3314__AT1G31750.1
Length=600
Score = 905 bits (490), Expect = 0.0
Identities = 567/604 (94%), Gaps = 6/604 (1%)
Strand=Plus/Plus
Query 17 TATCTCTCAAGTTCTTGATTTTAATTAAAGATGGGTAAAGACGA-CCACCACGAACAAGA 75
|||||||||||||||||||||||||||||||||||| |||||| || || |||||||||
Sbjct 1 TATCTCTCAAGTTCTTGATTTTAATTAAAGATGGGTGGAGACGAGCC-CCGCGAACAAGA 59
Query 76 CAAAAGATTCTTCTCACATCATAATCATCACGGCCATGGGTATCCGCCAGGAGCTTATCC 135
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 60 CAAAGGATTCTTCTCACATCATAATCATCACGGCTATGGGTATCCGCCAGGAGCTTATCC 119
Query 136 TCCTCCACCGCAGGGAGCTTATCCTCCACCGGGAGGTTACCCTCCGCAAGGTTATCCTCC 195
||||||| | | ||||||||||||||| || |||||||| |||||||||| |||||||||
Sbjct 120 TCCTCCA-C-C-GGGAGCTTATCCTCCGCCAGGAGGTTATCCTCCGCAAGCTTATCCTCC 176
Query 196 ACCACCTCACGGCTATCCACCGGCCGCTTACCCACCTCCACCCGGTGCTTATCCTCCCGC 255
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 177 GCCACCTCACGGCTATCCACCCGCCGCTTATCCACCTCCTCCCGGTGCTTATCCTCCCGC 236
Query 256 CGGGTATCCCGGACCATCCGGTCCTCGTCCAGGGTTTGGAGGAGGAGTTGGGGGATTGAT 315
||||||||||||||| || ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 237 CGGGTATCCCGGACCCTCTGGTTCTCGTCCAGGGCTTGGAGGAGGAGTTGGGGGATTGAT 296
Query 316 AGCAGGAGCGGCAACAGCGGCAGCGGCTGCAATGGGAGGTCACCATGCGGGTCATCACGG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGCAGGAGCGGCAACAGCGGCAGCGGCTGCAATGGGAGGTCACCATGCGGGTCATCACGG 356
Query 376 AGGCTACGGGCACCACGGCCACGGAAAATACAAAAGAGGGTTTTTCGGAGGAGGAAAGTA 435
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 357 AGGCTACGGGCACCACGGCCACGGAAAATATAAAAGTGGGTTTTTTGGAGGAGGAAAGTA 416
Query 436 CAAGCGAGGAAAGCATAGTATGTTTGGTGGAGGGAAGTACAAGCGTGGCAAGCACGGTAT 495
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 417 CAAGCGAGGAAAGCATAGTATGTTTGGAGGAGGGAAGTATAAGCGTGGCAAGCACGGCAT 476
Query 496 GTTCGGAGGCAAAAGAAGCAAGCATGGCATGTTCGGAGGGAAACGAGGCAAAGGCATGTT 555
||||||||||||| || |||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 477 GTTCGGAGGCAAACGAGGCAAGCATGGCAAGTTTGGAGGGAAACGAGGCAAGGGCATGTT 536
Query 556 CGGACGAAAGAAGTGGAAATGATCCATTAGCAT-CCTCTCTACATATATTATCGTAACAA 614
|||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 537 CGGACGAAGGAAGTGGAAATGATCCATTAGCATTCCTCTCTATATATATTATCGTAACAA 596
Query 615 TTTA 618
|||
Sbjct 597 CTTA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26762287734
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5