BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31760.1
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473362 jgi|Araly1|473362|fgenesh2_kg.1__3316__AT1G31760.1 843 0.0
> Ahg473362 jgi|Araly1|473362|fgenesh2_kg.1__3316__AT1G31760.1
Length=580
Score = 843 bits (456), Expect = 0.0
Identities = 542/582 (93%), Gaps = 12/582 (2%)
Strand=Plus/Plus
Query 2 ATTTGACTGTTGTTAGGGTTTTAGCTTCT-TCTCTAGTCGTTGTTTGTTTCTCTTTTCGG 60
||||| ||||| ||||||||||||||| | ||| ||||||||||||||||||||| ||||
Sbjct 1 ATTTGTCTGTTTTTAGGGTTTTAGCTT-TGTCTTTAGTCGTTGTTTGTTTCTCTTATCGG 59
Query 61 AAATAAAAAATGGCGGGAATTTCTAGGGTTTTGGGAGGGTTCAGGACACTGATGTCGAAG 120
||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 AAAAAAAAAATGGCGGCAATTTCTAGGGTTTTTGGAGGGTTCAGGACACTGATGTCGAAG 119
Query 121 GCGGCGACTGTTGAGGCCGTTACTGTAGCCGGAGAAGGAAAAGGGATATTCAAGACTCGT 180
||||||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||| |
Sbjct 120 GCGGCGAGTGTTGAGGCCGTTACCGTAGCTGGAGAAGGAAAAGGAATATTCAAGACTCTT 179
Query 181 CCGGTGTCACAGCAGCTAGCTAGCTTCGCCGGAGAAAGGGAACTCACTCGTGGTTCCGCT 240
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 CCGGTGTCACAGCAGCTGGCTAGCTTCGCCGGAGAAAGCGAACTCACTCGTGGTTCCGCC 239
Query 241 CTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGAATCCGGCGAACAAGAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTGAAGAAAGTTTGGGAGTATGTGAAGCTTCACAATCTCCAGAATCCGGCGAACAAGAAG 299
Query 301 GAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTCGGAATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GAGATTCACTGCGATGATAAGTTGAAGACGATTTTCGATGGCAAAGACAAAGTTGGAATC 359
Query 361 ACAGAGATCATGAAGCTCCTCTCACCACATTTCCCTAAATCCGTCTGATTTGGTGATG-T 419
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || |
Sbjct 360 ACAGAGATCATGAAGCTCCTGTCACCACATTTTCCTAAATCCGTCTGATTTGGTT-TGGT 418
Query 420 TT-ATCTAACGTAGTTGTATCTA-TCTAAGAAGAAATGGTTTGGCTTTTGTGGTTCATTT 477
|| | |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTAGCTAACGTAGTAGTATCCAATCTAAGAAGAAATGGTTTGGCTTTTGTGGTTCATTT 478
Query 478 CGGGTTGTATATGAAA--CTCTAAACCCGTTTGAACTTTGGTATGTTAACAAACCAAAAC 535
|||| ||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 479 CGGGATGTATATGAAAAACTCTAGACCCGATTGAGCTTTGGTATGTTAACAAACCAAAAC 538
Query 536 AATAA----CTCTCTTTTGATCCATCTACCGGAGAATATTAT 573
|| || |||||||||||||||||||| ||||||||||||
Sbjct 539 AAAAAAAAACTCTCTTTTGATCCATCTACTGGAGAATATTAT 580
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21405285429
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5