BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31780.1
Length=2295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922244 jgi|Araly1|922244|scaffold_103525.1 3290 0.0
> Ahg922244 jgi|Araly1|922244|scaffold_103525.1
Length=2083
Score = 3290 bits (1781), Expect = 0.0
Identities = 1984/2084 (95%), Gaps = 6/2084 (0%)
Strand=Plus/Plus
Query 95 CCAAACGAAGCAGAGTAACAATGGCTTCGACGGTGGGATTAGCACCGGGGCTCTCCCGGA 154
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1 CCAAACGAAGCAGAGTAACAATGGCTTCGACGGTGGGATTAGCACCGGGACTTTCTCGGA 60
Query 155 AATTGAAGAAGGTATTGGATTGTCGTACAGATAGTCCGGATCTGGTGGCGTCGCTTAACG 214
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATTGAAGAAGGTATTGGAATGTCGTACAGATAGTCCGGATCTGGTGGCGTCGCTTAACG 120
Query 215 CTTTATCCTCATTCTACGACGAGAACAGTGCTCACGCACGGAGAAATCTCAGATCGACGA 274
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTTATCCTCATTCTACGACGAGAACAGTGCTCACGCACGGCGAAATCTCAGATCGACGA 180
Query 275 TCGAGAAACGAGCGCTTCAGATCAACAGTGAGTTCCTTAACGCGGCTGATTCGACTCAGA 334
||||||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct 181 TCGAGAAGCGAGCGCTTCAGATCAACACCGAGTTCCTTAGGGCGGCTGATTCGACACAGA 240
Query 335 TCGCATTGGATCGCGTGGAGGAGGAAGTGAATGCTTTAGCTGATTGTTGCGATAAGATTG 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGCATTGGATCGCGTGGAGGAGGAAGTGAATGCTTTAGCTGATTGTTGCGATAAGATTG 300
Query 395 CGGCGGCGCTAAGTAGTTCCGCGGCTACCACTAGCGATATTATTAGTACTACTGAGAGGC 454
||||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 301 CGGCGGCGCTAAGCAGCTCCGCGGCTACCACTAGTGATATTATCAGTACTACTGAGAGGT 360
Query 455 TAAAGCAAGAGCTTGAGGTTACTACTCAGAGGCAAGAGATCGTTAACTGTTTTCTTCGTG 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAAAGCAAGAGCTTGAGGTTACTACTCAGAGGCAAGAGATCGTTAACTGTTTTCTTCGTG 420
Query 515 ATTACCAGCTTTCGAATGAAGAGATTAAAGCGCTTAGGGAAGATGAATTGAATGAGAATT 574
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTACCAGCTTTCGAACGAAGAGATTAAAGCGCTTAGGGAAGATGAATTGAATGAGAATT 480
Query 575 TCTTCCAAGCGTTGTCTCATGTTCAGGAAATTCATTCCAATTGCAAATTACTTCTTAGGA 634
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TCTTCCAAGCGTTGTCTCACGTTCAAGAAATTCATTCCAATTGCAAATTACTTCTTAGGA 540
Query 635 CGCATCATCAGCGTGCGGGTTTGGAATTGATGGATATGATGGCTGTGTATCAAGAAGGAG 694
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CGCATCATCAGCGTGCGGGTTTGGAACTGATGGATATGATGGCTGTGTATCAAGAAGGAG 600
Query 695 CATATGAGCGCCTTTGCAGGTGGGTTCAGGCTGAGTGTAGGAAACTCGGTGATACGGATA 754
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 601 CATATGAGCGCCTTTGCAGGTGGGTTCAGGCTGAGTGTAGGAAACTGGGTGATACGGATA 660
Query 755 ATCCAGAGGTGAGTGAGCTTTTGAGGACTGCTGTTCGTTGTCTCAAAGAAAGACCCGTTC 814
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 661 ACCCAGAGGTGAGTGAGCTTTTGAGGACTGCTGTTCGCTGTCTCAAAGAAAGACCCGTGC 720
Query 815 TCTTCAAATATTGTGCAGAGGAGGTAGGGAATCTGAGGCACAATGCGTTATTTAGAAGAT 874
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 721 TCTTCAAATATTGTGCAGAGGAGGTAGGGAATCTGAGGCACAATGCTTTATTTAGAAGGT 780
Query 875 TTATTAGCGCTCTTACACGTGGAGGGCCTGGAGGAATGCCTAGACCCATTGAAGTTCATG 934
||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 781 TTATTAGTGCTCTTACACGTGGAGGACCTGGAGGAATGCCTAGACCCATAGAAGTTCATG 840
Query 935 CCCATGACCCCTTAAGATACGTGGGAGACATGCTTGGGTGGCTACATCAGGCTTTGGCAT 994
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCCATGACCCCTTACGATATGTGGGAGACATGCTTGGGTGGCTACATCAGGCTTTGGCAT 900
Query 995 CAGAAAGAGAATTGGTTCATGCTTTATTTGATATAGACTCAGCTGACCATCAATCAAACG 1054
| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 901 CCGAAAGAGAATTGGTTCATGCTTTATTTGATATAGACGCAGCTGACCATAAATCAAACG 960
Query 1055 CAAAAAATACCTCTGAGAATATTGCCCTAAAGGCAGGAGAATCTGACTTT-ACATTTGTT 1113
|||| |||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||
Sbjct 961 CAAAGAATACCTCTGAGAATATTGCCCGAAAGGCAGCAGAATCTGA-TTTCACATTTGTT 1019
Query 1114 CTGGATAGAATTTTTGAAGGAGTTTGCCGTCCATTTAAAGTGAGAGTCGAACAAGTTCTG 1173
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1020 CTGGATAGAATTTTGGAAGGAGTTTGCCGGCCATTTAAAGTGAGAGTCGAACAAGTTTTG 1079
Query 1174 CAGTCACAACCAAGTCTTATTATTTCTTACAAACTCACCAACACCTTGGAGTTCTACAGC 1233
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1080 CAGTCACAACCAAGTCTTATTATTTCTTATAAACTCACTAACACCTTGGAGTTCTACAGC 1139
Query 1234 TACACTATCTCAGATTTACTTGGGCGAGACACTGCACTGTGTAATACAATTGGAATGGTA 1293
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1140 TACACTATCTCAGATTTACTCGGCCGAGACACTGCACTGTGTAATACAATTGGGATGGTA 1199
Query 1294 AAGGATGCTGCACAGAAAACCTTCTTTGACATTCTTAAAACCCGAGGAGAGAAACTTCTA 1353
||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1200 AAGAATGCTGCACAGAAAACTTTCTTTGACATTCTTAAAACCCGAGGGGAAAAACTTCTA 1259
Query 1354 CGATACCCTCCACCTGTAGCCGTTGATCTCTCTCCTCCTCCAGCTGTCCGAGAAGGAGTT 1413
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1260 CGATACCCTCCACCTGTAGCCGTCGATCTCTCTCCTCCTCCAGCTGTCCGAGAAGGAGTT 1319
Query 1414 TCTCTTACTCTTGAGATTATCGAGAATTACAACAGTATGATGGTTTCTGCTTCAGGAGAG 1473
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1320 TCTCTAACTCTTGAGATAATCGAGAATTACAACAGTATGATGGTTTCTGCCTCAGGAGAG 1379
Query 1474 AAACCGGCTTTTGATCCCGTCCTCTCTGCACTGCTTGACCCTATTATTAAGATGTGCGAG 1533
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1380 AAACCGGCTTTTGATCCCGTCCTCTCTGCACTGCTTGACCCAATTATCAAGATGTGCGAG 1439
Query 1534 CAAGCAGCAGAGGCGCATAAATCAAAGAAGAGCGGCCAATTACCCAGAAGAAGCAGAACA 1593
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1440 CAAGCAGCAGAGGCGCATAAATCGAAGAAGAGCGGCCAGTTACCCAGAAGAAGTAGAACA 1499
Query 1594 AGTTCTGACTCAAGCCAGTTAACCTCAGTCGATGCTCTACTCTCTAGCAGCCCATCCCCA 1653
|| | |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1500 AGCACCGACTCAAGCCAGCTAACCTCAGTCGATGCTCTACTCTCTAGTAGCCCGTCCCCA 1559
Query 1654 CCACAGAACAACGAAACACCCTCAAAAATATTCCTCATCAACTGTTTATGCGCGATCCAA 1713
||||| |||||||||||||| || ||||||||||||||||||||| ||||||| ||||||
Sbjct 1560 CCACATAACAACGAAACACCATCGAAAATATTCCTCATCAACTGTCTATGCGCAATCCAA 1619
Query 1714 CAACCATTGCTAAGACACGATGTTGCGTCCCAATACGTAACCAACATTGGATTAATGATC 1773
||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||||||
Sbjct 1620 CAACCGTTGCTAAGACATGACGTTGCGGCCCAATACGTAACCAACATTGGATCAATGATC 1679
Query 1774 GAGAACCACATAAACCTCCTCGTCCAGAATGAAGTTGACACACTACTCCACAAATGCGGT 1833
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1680 GAGAACCACATAAACCTCCTTGTCCAGAATGAAGTTGACACACTACTACAAAAATGCGGT 1739
Query 1834 CTTTCAGACAAAATGCAAATCTTCCGCTCTTCCACATCCGAA-CTTCCCTTATCTGAACG 1892
||||| |||||||||||||||||||||||||| ||||||||| || |||| ||||||||
Sbjct 1740 CTTTCGGACAAAATGCAAATCTTCCGCTCTTCGACATCCGAAGCTCCCCTG-TCTGAACG 1798
Query 1893 ACAAGACACTTCACCCGCGATGCTATCCGAATGCCTCAAGGCATTCTTCGGCCTCGTTTT 1952
|||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||
Sbjct 1799 ACAAGACACTTCACCCACAATGCTATCCGAATGCCTCAAGGCATTCTTCAGTCTCGTTTT 1858
Query 1953 GGGAAGCGAAGGCTCTCTTCCTGAGTTTGAGCAGATACAGGTCCCTAAACTCAGGTCTGA 2012
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1859 GGGAAGTGAAGGCTCTCTTCCTGAGTTTGAGCAGATACAAGTCCCTAAACTCAGGTCTGA 1918
Query 2013 AGCTTGTGTCAGGGTCGCTAAAACTTTAGCTGAAGCTTACGAAGTTATATACCAAGCTGT 2072
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1919 AGCTTGTGTCAAGGTCGCTAAAACTATAGCTGAAGCTTACGAAGTTATATACCAAGCTGT 1978
Query 2073 AACAGATCAACAAAATGGATATCCAGATCC-AAAGTCTCTCGCCCGACATCCACCAGATC 2131
||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1979 AACGGATCAACAAAATGGATATCCAGATCCGAAA-TCTCTCGCCCGACATCCACCAGATC 2037
Query 2132 AGATCCGAACGATTCTTGGTATATGAATGTACGCTTGttttttt 2175
| |||||||| ||||||||||||||||||||||||| || ||||
Sbjct 2038 AAATCCGAACCATTCTTGGTATATGAATGTACGCTTCTTATTTT 2081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86426765905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5