BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31790.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922245 jgi|Araly1|922245|scaffold_103526.1 1908 0.0
> Ahg922245 jgi|Araly1|922245|scaffold_103526.1
Length=1276
Score = 1908 bits (1033), Expect = 0.0
Identities = 1184/1257 (94%), Gaps = 10/1257 (1%)
Strand=Plus/Plus
Query 27 CTGCAAAAG-AAAATTTCAGATGAAAACTTTGGAATTAGCTTTACCTCCATCTCCACCGT 85
||||||||| |||||||| |||||||||| ||||||||||||||||||| |||||||| |
Sbjct 3 CTGCAAAAGAAAAATTTCCGATGAAAACTCTGGAATTAGCTTTACCTCCTTCTCCACCAT 62
Query 86 CTTTAGTTCCTTCTTTTAACTACAATTCCACCGCACGAAGCGTCGGGAATGATGTCAGAA 145
|||||||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 63 CTTTAGTTCCTTCTTTCAACTACAATTCCGCCGCACGAAGCGTCGGAAATGACGTCAGAA 122
Query 146 CCAACTTCGATGTTCAACTTTTTCTAAGGAAACCTAAACACCAAAAATCAGAACCTGTCG 205
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 123 CCAACTTCGATGTTCAACTTTTTCTAAGGAAACCCAAACACCAAAAATCAGAACCCGTCG 182
Query 206 TCGTTATTCAACAACCTCAGATTCAACCGCAAAATCCAAGTT-CTCGTTGTTCTACTTCT 264
||||||||||||||||||||||||||||| |||| |||| || |||||||||||||||||
Sbjct 183 TCGTTATTCAACAACCTCAGATTCAACCGGAAAAACCAA-TTCCTCGTTGTTCTACTTCT 241
Query 265 GATATTCTCAGACTAATGGATTCTCTTTCTTTACCAGGAAACGAAGATATTTACTCTTGT 324
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct 242 GATATTCTCAGACTAATGGATTCTCTTTCTTTACCTGGAAACGAAGATCTTTACTCGTGT 301
Query 325 CTTGCCAAAGAATCAGCCAGAGAAAACGATCAACGTGGAGCTCACGAGCTACAAGTGCAT 384
||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 302 CTTGCCAAAGAATCAGCCAGAGAAAACGATCGACGTGGAGCTTACGAGTTACAAGTGCAT 361
Query 385 ATCATGAAGTCTAGTAT---TAGACCCACGATC-ACTTTTATCAATCGTCTTCTTTTGAT 440
||||||||||| ||||| |||||||||| | |||||| ||||||||||||| ||||
Sbjct 362 ATCATGAAGTCCAGTATAAGAAGACCCACGA-CTACTTTTGTCAATCGTCTTCTCCTGAT 420
Query 441 GCATGTTTCGTGTGGGCGTTTAGATATTACACGCCAGATGTTCGATAGAATGCCTCACAG 500
|||||| |||||||| |||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 421 GCATGTATCGTGTGGACGTTTAGATATTACACGCCACATGTTCGATAAAATGCCTCACAG 480
Query 501 AGATTTTCATTCCTGGGCAATTGTTTTCCTCGGTTGTATTGAAATGGGTGATTACGAGGA 560
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 AGATTTTCATTCATGGGCAATTGTTTTCCTCGGTTGTATTGAAATGGGTGATTACGAAGA 540
Query 561 CGCTGCTTTCCTTTTTGTTTCGATGTTGAAACATTCTCAGAAAGGTGCTTTCAAGATTCC 620
||||||||| || |||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 541 CGCTGCTTTGCTCTTTGTTTCGATGTTGAAATATTCTCAGAATGGTGCTTTCAAGATTCC 600
Query 621 GTCTTGGATCTTGGGCTGCGTTTTGAAAGCTTGTGCCATGATTAGAGACTTCGAGTTAGG 680
| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 GCCTTGGATCATGGGCTGCGTTTTGAAAGCTTGTGCCATGATTAGAGACTTTGAGTTAGG 660
Query 681 GAAACAGGTTCATGCCTTGTGTCATAAGCTAGGGTTTATAGACGAAGAAGATTCATATCT 740
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GAAACAGGTTCATGCCTTGTGTCATAAGCTAGGGTGTATAGACGAAGAAGATTCATATCT 720
Query 741 ATCGGGTTCTTTGATACGTTTCTACGGAGAATTCAGGTGTTTGGAAGACGCTAATCTCGT 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCGGGTTCTTTGATACGTTTCTACGGAGAATTCAGGTGTTTGGAAGACGCTAATCTCGT 780
Query 801 GTTACACCAGCTCTCTAATGCTAACACTGTTGCTTGGGCAGCGAAAGTTACTAACGATTA 860
||||| ||||| |||||||||||||| |||| |||||||||||| ||||||||||||||
Sbjct 781 TTTACATCAGCTTTCTAATGCTAACACCGTTGTTTGGGCAGCGAAGGTTACTAACGATTA 840
Query 861 CAGAGAAGGAGAGTTTCAAGAAGTAATCCGCGATTTCATCGAAATGGGTAACCATGGAAT 920
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 CAGAGAAGGGGAGTTTCAAGAAGTAATCCGCGATTTCATCGAAATGGGTAACCACAGAAT 900
Query 921 CAAGAAGAACGTCTCAGTGTTCTCTAATGTTCTAAAAGCATGCT-CATGGGTCAGTGACG 979
|| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 901 CAGGAAGAACGTCTCAGTGTTCTCTAATGTTCTAAAAGCATG-TACATGGGTCAGTGACG 959
Query 980 GTGGGAGAAGCGGGCAACAAGTGCATGCGAATGCTATAAAGCTCGGATTTGAGTCAGATT 1039
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 960 GTGGGAGAAGCGGGAAACAAGTGCATGCGGATGCTATAAAGCTCGGATTTGAGTCAGATT 1019
Query 1040 GTTTGATCCGATGTCGGTTAATTGAGATGTATGGGAAGTATGGGAAGGTGAAAGACGCGG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTTGATCCGATGTCGGTTAATTGAGATGTATGGGAAGTATGGGAAGGTGAAAGACGCGG 1079
Query 1100 AAAAGGTTTTTAAGAGTAGTAAGGACGAGACTAGTGTTAGTTGCTGGAACGCTATGGTCG 1159
||||||| || |||||||| ||||||||||| | ||||| ||||||||||||||||||||
Sbjct 1080 AAAAGGTGTTCAAGAGTAGCAAGGACGAGACAAATGTTAATTGCTGGAACGCTATGGTCG 1139
Query 1160 CAAGTTATATGCAGAATGGGATTTACATTGAAGCCATTAAGCTTCTCTATCAGATGAAAG 1219
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1140 CGGGTTATATGCAGAATGGGATTTACATTGAAGCCATAAAGCTTCTCTATCAGATGAAAG 1199
Query 1220 CAACTGGAATCAAAGCACATGACACGCTTTTGAACGAAGCCCACCTTCAGATGTAAC 1276
||||||||||||||||||| |||||||||||||||||||||||| ||||| | ||||
Sbjct 1200 CAACTGGAATCAAAGCACAGGACACGCTTTTGAACGAAGCCCACTTTCAGCTATAAC 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5