BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31800.1
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473366 jgi|Araly1|473366|fgenesh2_kg.1__3320__AT1G31800.1 3020 0.0
> Ahg473366 jgi|Araly1|473366|fgenesh2_kg.1__3320__AT1G31800.1
Length=2003
Score = 3020 bits (1635), Expect = 0.0
Identities = 1905/2031 (94%), Gaps = 36/2031 (2%)
Strand=Plus/Plus
Query 41 GGCTATGGCCTTTCCTCTTTCTTATACTCCGACGATTACTGTTAAACCAGTAACGTACTC 100
||||||||| |||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct 1 GGCTATGGCGTTTCCTCTTTCTTATACT-C--CGATTTCCGTTAAACCAGTAACGTACTC 57
Query 101 TCGGAGATCGAACTTTGTAGTTTTCTCGTCGAGTTCTAATGGACGAGATCCTT-TAGAGG 159
||||||||||||||||||||||||| | |||| |||||||||| ||||||||| | ||||
Sbjct 58 TCGGAGATCGAACTTTGTAGTTTTCGCATCGAATTCTAATGGAAGAGATCCTTCT-GAGG 116
Query 160 AGAATTCAGTACCTAATGGTGTGAAAAGCTTGGAGAAGCTTCAAGAAGAGAAGCGTCGTG 219
| |||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 117 ATAATTCAGTTCCTAATGGCGTGAAAAGCTTGGAGAAGGTTCAAGAGGAGAAGCGTCGTG 176
Query 220 CTGAGTTATCTGCTAGGATTGCTTCTGGAGCTTTCACTGTACGGAAATCTAGTTTTCCAT 279
|||||||||||||| ||||||||||||||||||||||||||| | || | |
Sbjct 177 CTGAGTTATCTGCTCGGATTGCTTCTGGAGCTTTCACTGTAC-G-AA---A-------A- 223
Query 280 CTACAGTGAAGAATGGTTTATCTAAGATT-GGAATACCAAGCAATGTTCTTGATTTCATG 338
| | | ||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 224 -T-C--T--AGAATGGTTTATCTAAGGTTGGGAATTCCAAGCAATGTTCTTGATTTCATG 277
Query 339 TTTGATTGGACTGGTTCTGACCAAGACTACCCCAAGGTTCCTGAGGCTAAAGGCTCGATT 398
||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||
Sbjct 278 TTTGATTGGACTGGTTCTGACGAAGACTACCTCAAGGTTCCTGAGGCTAAAGGGTCGATT 337
Query 399 CAGGCGGTCCGGAACGAAGCTTTCTTCATCCCTTTGTATGAGCTTTTCCTTACTTATGGT 458
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 338 CAGGCGGTTCGGAACGAAGCTTTCTTTATCCCTTTGTATGAGCTTTTCCTTACTTATGGT 397
Query 459 GGAATTTTCAGGTTGACCTTTGGGCCTAAGTCATTCTTGATCGTGTCGGATCCTTCTATT 518
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 398 GGCATTTTCAGGTTGACCTTTGGGCCTAAGTCGTTCTTGATCGTGTCGGATCCTTCTATT 457
Query 519 GCTAAACATATATTGAAGGACAATGCAAAAGCTTACTCCAAGGGGATTTTAGCTGAAATT 578
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 458 GCTAAGCATATATTGAAGGACAATGCAAAAGCTTACTCCAAGGGAATTTTAGCTGAAATT 517
Query 579 CTAGATTTTGTGATGGGAAAAGGACTCATTCCTGCTGATGGGGAGATATGGCGTAGACGA 638
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 518 CTAGATTTTGTGATGGGAAAAGGACTCATACCGGCTGATGGGGAGATATGGCGTAGACGA 577
Query 639 AGGCGTGCCATTGTTCCTGCATTGCATCAAAAGTATGTAGCAGCTATGATTAGTTTATTC 698
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 578 AGACGTGCCATTGTTCCTGCATTGCATCAAAAGTATGTAGCAGCTATGATTAGCTTATTT 637
Query 699 GGAGAAGCTTCAGATAGGCTTTGTCAGAAGCTTGATGCTGCTGCATTGAAAGGGGAAGAA 758
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 638 GGAGAAGCTTCAGATAGGCTTTGCCAGAAGCTTGATGCTGCTGCATTGAAAGGGGAAGAA 697
Query 759 GTAGAGATGGAATCACTCTTCTCTCGTTTGACACTTGATATTATTGGCAAGGCGGTTTTC 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GTAGAGATGGAATCACTCTTCTCTCGTTTGACACTTGATATTATTGGCAAGGCGGTTTTC 757
Query 819 AATTACGACTTTGACTCCCTTACTAATGATACCGGTGTGATCGAGGCAGTGTACACTGTT 878
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 758 AATTACGACTTTGACTCCCTAACTAATGATACCGGTGTGATCGAGGCAGTTTACACTGTC 817
Query 879 CTAAGAGAAGCTGAAGACAGAAGTGTTTCACCTATTCCTGTTTGGGACATACCCATTTGG 938
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 818 CTAAGAGAAGCTGAAGACAGAAGTGTTTCACCTATTCCTGTTTGGGACATACCGATTTGG 877
Query 939 AAAGATATTTCCCCACGTCAGAGGAAAGTTGCTACTTCCT-TGAAATTAATCAATGACAC 997
|||||||||||||| |||||||||||||||||||||| || ||||||| |||||||||||
Sbjct 878 AAAGATATTTCCCCGCGTCAGAGGAAAGTTGCTACTT-CTCTGAAATTGATCAATGACAC 936
Query 998 ACTTGATGATTTGATTGCAACATGCAAGAGAATGGTAGAAGAAGAGGAGTTGCAGTTTCA 1057
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 937 ACTTGATGATTTGATCGCCACATGCAAGAGAATGGTAGAAGAAGAGGAGTTGCAGTTTCA 996
Query 1058 CGAGGAGTATATGAACGAAAGAGATCCTAGCATCCTTCACTTTCTTTTAGCTTCAGGAGA 1117
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 997 CGAGGAGTATATGAACGAACGAGATCCTAGCATCCTTCACTTTCTTTTGGCTTCAGGAGA 1056
Query 1118 TGATGTCTCTAGTAAGCAGCTTCGTGATGACTTGATGACAATGCTTATAGCCGGACATGA 1177
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1057 TGATGTCTCTAGCAAGCAGCTCCGCGATGACTTGATGACAATGCTTATAGCCGGACATGA 1116
Query 1178 AACATCGGCGGCAGTATTAACATGGACCTTTTACCTTTTAACAACGGAACCAAGTGTAGT 1237
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1117 AACATCGGCGGCAGTATTAACATGGACCTTTTACCTTTTAACAACGGAACCCAGTGTAGT 1176
Query 1238 TGCCAAACTTCAAGAAGAGGTTGATTCTGTAATTGGAGATAGATTCCCAACCATACAAGA 1297
||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1177 TGCCAAACTCCAAGAAGAGGTTGATTCTGTTATTGGAGATAGATTCCCAACCATAGAAGA 1236
Query 1298 TATGAAAAAGCTGAAATACACTACTCGAGTCATGAATGAGTCATTGAGATTATATCCACA 1357
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1237 TATGAAAAAGCTGAAATACACTACCCGAGTCATGAATGAGTCATTGAGACTATATCCACA 1296
Query 1358 ACCACCAGTACTGATCCGTCGTTCTATAGATAATGATATACTTGGAGAGTATCCGATAAA 1417
||||||||||||||||||||||||| |||| || ||||| |||||| ||||||| |||||
Sbjct 1297 ACCACCAGTACTGATCCGTCGTTCTTTAGAGAACGATATGCTTGGACAGTATCCCATAAA 1356
Query 1418 AAGGGGAGAGGATATCTTCATCTCGGTTTGGAATCTACATCGAAGTCCTCTGCATTGGGA 1477
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1357 GAGGGGAGAGGATATCTTCATCTCGGTTTGGAATCTACATCGAAGTCCTCTTCATTGGGA 1416
Query 1478 TGATGCAGAGAAGTTCAATCCCGAGAGATGGCCTTTGGATGGACCAAACCCAAATGAGAC 1537
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 TGATGCGGAAAAGTTCAATCCCGAGAGATGGCCTTTGGATGGACCAAACCCAAATGAGAC 1476
Query 1538 AAACCAAAACTTCAGTTACTTACCTTTCGGTGGAGGACCGCGGAAATGTATAGGCGACAT 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 AAACCAAAACTTCAGTTACTTACCTTTCGGTGGAGGACCGCGGAAATGTATAGGCGACAT 1536
Query 1598 GTTTGCTTCCTTTGAGAATGTGGTAGCAATCGCAATGCTTATTCGAAGATTTAACTTTCA 1657
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1537 GTTTGCTTCCTTTGAGAATGTGGTAGCAATCGCAATGCTGATTCGAAGATTTGACTTTCA 1596
Query 1658 GATTGCACCAGGAGCTCCTCCGGTGAAAATGACTACAGGAGCTACAATACACACCACAGA 1717
|| ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 1597 GACTGCACCAGGAGCTCCTCCGGTAAAAATGACTACCGGAGCTACAATACATACCACAGA 1656
Query 1718 AGGATTGAAATTGACAGTAACAAAGAGGACAAAACCTCTGGACATACCATCCGTACCGAT 1777
|||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1657 AGGATTGAGATTGACAGTAACAAAGAGGACAAAACCTCTCGACATACCACCCGTACCGAT 1716
Query 1778 ACTTCCAATGGATA-CTTCACGGGATGAAGTTTCATCTGCTCTTTCTTAAGTCTTCATCT 1836
||||||||| || | |||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 1717 ACTTCCAATTGA-AGCTTCCCGGGATGAAGTTTCTTCTGCTCTGTCTTAAGTCTTCATCT 1775
Query 1837 TTACAAAACTGAAAACAAACAAGCTCAGATGAAGAAGCAAAAATCTTGTGTTAGAACAGC 1896
|| |||||||||||||||||||||||| ||||| ||||||| ||||||| |||||||| |
Sbjct 1776 TTGCAAAACTGAAAACAAACAAGCTCAAATGAAAAAGCAAATATCTTGTTTTAGAACAAC 1835
Query 1897 AAATGTTGAATT-GTTGGAACATGACCAATGCTTTCTGATTATTTATCTGCACT-GTAAA 1954
|||||| ||||| |||||||||||||| |||||| |||||||||| |||||||| || |
Sbjct 1836 AAATGTAGAATTTGTTGGAACATGACCGATGCTT-CTGATTATTTCTCTGCACTAGTTA- 1893
Query 1955 ATGCAGACAAGTAAAA-T-GAGAAGATTTATTATTCTTTGGaaaaaaaaaTGTTTTTGTC 2012
||||||||||||||| | | ||||||||||||||||||| |||||||||||||||| ||
Sbjct 1894 -TGCAGACAAGTAAAAATTGTGAAGATTTATTATTCTTTGAAAAAAAAAATGTTTTTCTC 1952
Query 2013 TGCACAGTGAAGATAATATAACTTCTGGGTTCTATGTAAGTTCAAATATTT 2063
|||||||||||||| ||||||||| ||| |||||| ||||||||||||||
Sbjct 1953 TGCACAGTGAAGATGATATAACTTTTGGATTCTATAAAAGTTCAAATATTT 2003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77856460780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5