BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31810.1
Length=4209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473368 jgi|Araly1|473368|fgenesh2_kg.1__3322__AT1G31810.1 3565 0.0
> Ahg473368 jgi|Araly1|473368|fgenesh2_kg.1__3322__AT1G31810.1
Length=3401
Score = 3565 bits (1930), Expect = 0.0
Identities = 2246/2392 (94%), Gaps = 48/2392 (2%)
Strand=Plus/Plus
Query 1840 CCACCCCCACCGCCACCTCCTCCCCCTCTTTTTACGAGCACAACTTCATTCTCACCCTCA 1899
||||| |||||||||||||||||||||| ||||| ||||||| | ||||| |||||| ||
Sbjct 1025 CCACCGCCACCGCCACCTCCTCCCCCTCCTTTTATGAGCACAGCCTCATTTTCACCCCCA 1084
Query 1900 -CAGCCACCCCCA---CCACCACCTCTCCCTAGTTTCAGCAATAGAGATCCTTTGACAAC 1955
|| ||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 CCA-CCACCCCCACCCCCGCCACCTCTCCCTAGTTTCAGCAATAGAGATCCTTTGACAAC 1143
Query 1956 ATTGCATCAACCTATCAATAAAACTCCTCCACCACCACCTCCTCCTCCCCCGCCA-CTGC 2014
|| |||||| |||| ||| ||||| ||||||||||||||||||||||| |||||| || |
Sbjct 1144 ATCGCATCAGCCTACCAACAAAACCCCTCCACCACCACCTCCTCCTCCTCCGCCACCT-C 1202
Query 2015 CATCTAGAAGCATCCCTCCGCCATTAGCTCAACCACCACCACCACG------tcctcctc 2068
| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1203 CTTTTAGAAGCATCCCTCCGCCATTAGCTCAACCACCACCACCACGTCCTCCTCCTCCTC 1262
Query 2069 ctcctcctcctccgcctcctTCTTCAAGAAGCATTCCTTCGCCCTCAGCACCACCGCCAC 2128
|||||||||||||||| |||||||| |||||||||||| | ||||||| || ||||
Sbjct 1263 CTCCTCCTCCTCCGCCACCTTCTTCGAGAAGCATTCCTCCACCCTCAG---CA---CCAC 1316
Query 2129 CGCCACCACCGCCTCCGTCGTTTGGGAGCACAGGAAATAAGCGTCAGGCGCAaccacctc 2188
||||||||||||| || ||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1317 CGCCACCACCGCCACCTTCGTTTGGGAGCACACGAAATAAGCTTCAGGCGCAACCACCTC 1376
Query 2189 cacctccacct---cctcctcctccCA--CAAG-AA-TTCCTGCTGCTAAATGT---GCA 2238
| ||||| ||| ||||||||||| | |||| || || ||||||||||||| ||
Sbjct 1377 CGCCTCCGCCTCCACCTCCTCCTCCAATCCAAGCAACTT-TTGCTGCTAAATGTCCACCA 1435
Query 2239 CCACCACCACCCCCGCCTCCACCTACATCTCATTCTGGTTCTATTCGTGTTGGCCCACCT 2298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 CCACCACCACCCCCGCCTCCACCTACATCTCATTCTGGTTCTATTCGTGTTGGCCCACCT 1495
Query 2299 TCGACACCACCACCACCTCCACCTCCTCCTCCTAAAGCTAATATTTCAAATGCCCCCAAG 2358
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TCGGCACCACCACCACCACCACCTCCTCCTCCTAAAGCTAATATTTCAAATGCCCCCAAG 1555
Query 2359 CCACCAGCCCCTCCGCCACTTCCTCCTTCATCTACAAGGTTGGGTGctccccct---cct 2415
|| ||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1556 CCTCCACCCCCTCCGCCACTTCCTCCTTCATCTACAAGGTTTGGTGCTCCCCCTCAACCT 1615
Query 2416 cctccaccaccaccactatccaagacccctgctccgcctccaccacctcTATCCAAGACC 2475
|| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1616 CCACCACCACCACCACTATCCAAGACCCATGCTCCGCCTCCACTACCTCTATCCAAGACC 1675
Query 2476 CCTGTTCCTCCTCCTCCACCAGGGCTGGGTCGTGGTACAAGTAGTGGCCCACCACCACTG 2535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1676 CCTGTTCCTCCTCCTCCACCAGGGCTGGGTCGTGGTACAAGTAGTGGCCCACCACCAGTG 1735
Query 2536 GGAGCAAAAGGTTCAAATGCACCACCACCACCTCCTCCTGCAGGAAGGGGGAGAGCTTCC 2595
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1736 GGAGCTAAAGGTTCAAATGCACCACCACCACCTCCTCCTGCAGGAAGGGGCAGAGCTTCC 1795
Query 2596 TTGGGACTTGGAAGAGGCCGAGGTGTGAGTGTTCCTACTGCTGCACCTAAGAAAACCGCG 2655
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1796 TCGGGACTTGGAAGAGGCCGAGGTGTGAGTGTTCCTACTGCTGCACCTAAGAAAGCCGTA 1855
Query 2656 TTAAAACCTTTGCATTGGTCTAAAGTTACTCGGGCAGCAAAAGGTAGTTTGTGGGCTGAT 2715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 TTAAAACCTTTGCATTGGTCTAAAGTTACTCGGGCAGCAAAAGGTAGTTTGTGGGCTGAT 1915
Query 2716 ACTCAGAAACAGGAAAATCAACCACGGGCCCCAGAAATAGATATATCAGAGCTCGAGAGT 2775
| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1916 AGTCAGAAGCAGGAAAATCAACCACGGGCCCCTGAAATAGATATATCAGAGCTCGAGAGT 1975
Query 2776 CTTTTTTCTGCAGTTTCAGATACCACAGCTAAGAAGAGCACAGGTCGCCGGGGTTCTAGT 2835
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1976 CTTTTTTCTGCAGTTTCAGATACCACAGCTAAGAAAAGCACAGGTCGCCGGGGTGCTAGC 2035
Query 2836 ATCAGCAAACCTGAGAAAGTTCAATTGGTTGACCTGCGAAGAGCAAATAACTGTGAAATA 2895
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2036 ATCAGCAAACCTGAGAAAGTTCAACTGGTTGACCTGCGAAGAGCAAATAACTGTGAAATT 2095
Query 2896 ATGCTCACGAAAATAAAGATTCCTTTGCCAGATATGCTTAGTGCAGTGCTAGCCTTGGAT 2955
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2096 ATGCTTACGAAAATAAAGATTCCTTTACCAGACATGCTTAGTGCAGTGCTAGCCTTGGAT 2155
Query 2956 TCATTAGCTCTGGACATTGACCAGGTTGAAAATCTCATCAAATTTTGTCCGACCAAGGAA 3015
|| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 TCGTCAGCTCTGGACATCGACCAGGTTGAAAATCTCATCAAATTTTGTCCGACCAAGGAA 2215
Query 3016 GAGATGGAACTGTTGAGGAATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAG 3075
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2216 GAAATGGAAATGTTGAGGAATTATACTGGTGACAAGGAAATGCTTGGAAAGTGTGAACAG 2275
Query 3076 TTTTTCATGGAACTAATGAAGGTTCCACGTATAGAAGCAAAGTTACGAGTGTTTGGCTTT 3135
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2276 TTTTTCATGGAACTAATGAAGGTTCCACGTATAGAAGCAAAGTTGCGAGTGTTTGGCTTT 2335
Query 3136 AAGATTACCTTTGCTTCTCAGGTGGAGGAGTTAAAAAGCTGCCTAAATACAATAAACGCT 3195
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 2336 AAGATTACCTTTGCTTCTCAGGTGGAAGAGTTAAAAAGCTGCTTAAATACAATAAACGCT 2395
Query 3196 GCTACTAAAGAGGTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACG 3255
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 GCTAGTAAAGAGGTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACA 2455
Query 3256 TTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGGGTCTGCTGTTGGGTTCAAACTAGAC 3315
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 2456 TTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGGTTCTGCTGTGGGGTTCAAACTGGAC 2515
Query 3316 AGTCTCCTTAAATTATCTGATACTCGTGCTAGAAATAACAAAATGACTTTGATGCATTAC 3375
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2516 AGTCTTCTTAAATTATCTGATACTCGTGCTAGAAATAACAAAATGACTTTGATGCATTAC 2575
Query 3376 TTATGCAAGCTTGTTGGTGAAAAAATGCCAGAATTGCTGGATTTTGCTAATGACCTTGTT 3435
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2576 TTATGCAAGCTTGTTGGTGAAAAAATGCCAGAATTGTTGGATTTTGCTAATGACCTTGTT 2635
Query 3436 CACTTAGAAGCTGCTTCAAAGATTGAATTGAAAACGTTGGCTGAAGAAATGCAAGCGGCG 3495
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2636 CACTTAGAAGCTGCTTCGAAGATTGAATTGAAAACGTTGGCTGAAGAAATGCAAGCGGCG 2695
Query 3496 ACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATT 3555
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2696 ACTAAAGGCCTTGAGAAGGTTGAGCAAGAACTAATGGCTTCAGAAAATGATGGTGCAATT 2755
Query 3556 TCTTTGGGCTTCAGAAAGGTCTTGAAGGAGTTTCTTGATATGGCTGATGAGGAAGTGAAG 3615
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2756 TCTTTGGGCTTCAGGAAGGTCTTGAAGGAGTTTCTTGATATAGCGGATGAGGAAGTGAAG 2815
Query 3616 ACGCTTGCTTCGCTATATTCAGAAGTGGGAAGAAATGCAGATTCTTTATCTCACTACTTC 3675
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2816 ACGCTTGCTTCTTTATATTCAGAAGTGGGAAGAAATGCAGATTCTTTGTCTCACTACTTC 2875
Query 3676 GGTGAGGATCCAGCTCGATGTCCTTTTGAGCAAGTGACCAAGATTCTGACTCTTTTTATG 3735
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2876 GGTGAGGATCCAGCTCGATGTCCTTTCGAGCAAGTGACCAAGATTCTGACTCTTTTCATG 2935
Query 3736 AAAACATTCATCAAATCCCGAGAGGAGAATGAAAAACAAGCCGAGGCTGAGAAGAAGAAA 3795
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2936 AAAACATTCATCAAATCTCGAGAGGAGAATGAAAAACAAGCCGAGGCTGAGAAGAAGAAA 2995
Query 3796 CTGGAGAAAGAAGCAATTAAAG-AGAAGTCAGCGACAAAGAAAGATGGCG-TCGATAACG 3853
||||| ||||||||||| |||| |||||||||||||||||||||||| || | |||||||
Sbjct 2996 CTGGAAAAAGAAGCAAT-AAAGGAGAAGTCAGCGACAAAGAAAGATGCCGCT-GATAACG 3053
Query 3854 ACAACGATCTTATCCAGCAGATCCATAGACATAGAACATGAACAAACATCGGTCTTGAAC 3913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 3054 ACAACGATCTTATCCAGCAGATCCATAGACATAGAACATGAACAAACATCGGTCTTAAAC 3113
Query 3914 GGAAGACCCGAGGTTTTCAGATCGATCGATAAAAGCTTTGTTTTATAGGACTCAATGTTG 3973
|||||||| ||||||||||||||| | | ||| ||||||||||||||||||||||||||
Sbjct 3114 CGAAGACCCAAGGTTTTCAGATCGA-C-A-AAA-GCTTTGTTTTATAGGACTCAATGTTG 3169
Query 3974 CACATACGGAACAAGAGCAGAGATCTTTCCTAGATCTTAGACAAAGTAGTCAACGTCTAT 4033
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3170 CACATACGGAACAAGAGCAGAGATCTTTCCTAGATCTTAGACAAAGTAGTCAACTTCTAT 3229
Query 4034 GATGTTTAGATGGAAGTGTTTTATCTCTGATCACTTCATTGATGTAAAA--TCAGAGGTT 4091
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 3230 GATGTTTAGATGGAAGTGTTTTATCTCTGATCTCTTCATTGATGTAAAAACTCAGAGGTT 3289
Query 4092 CGTATTTATGTCCTAG----A-AAATATTTGAACTTACATAGAACCCAGAAGTTATATTA 4146
||| ||||||||| || | |||||||||||||| |||||| ||| ||||||||| |
Sbjct 3290 CGTGTTTATGTCCCAGTCCTAGAAATATTTGAACTTTTATAGAATCCAAAAGTTATATCA 3349
Query 4147 TCTTCACTGTGCAGACAAAAACAtttttttttCCAAAGAATAATAAATCTTC 4198
||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 3350 TCTTCACTGTGCAGAGAAAAACATTTTTTTTTTCAAAGAATAATAAATCTTC 3401
Score = 673 bits (364), Expect = 0.0
Identities = 433/466 (93%), Gaps = 5/466 (1%)
Strand=Plus/Plus
Query 1339 AATGGAGATGATGCTGCTTTGTGGTTGCTGAAACAACTTGCTGCCATTAATGATGCAAAA 1398
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 653 AATGGAGATGATGCTGCTTTGTGGTTGCTAAAACAACTTGCTGCCATAAATGATGCGAAA 712
Query 1399 GAGTTTACAAGATTTCGGCACAAAGGGAGTTTTTATTTTAATTCTCCTGACTCTGAAGAG 1458
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GAGTTTTCAAGATTTCGGCACAAAGGGAGTTTTTATTTTAATTCTCCTGACTCTGAAGAG 772
Query 1459 GAGACAAACACATCTAGTGCCGCTGATAGTTCAGATGAAGGCTTTGAAGCCATTCAGAGA 1518
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 773 GAGACAAACACATCTAGTGCCGCTGATAGTTCAGATGAAGGCTTTGATGCCTTTCAGAGA 832
Query 1519 CCTCGTATTCATATACCTTTTGATAATGATGATACAGACGACATTACTTTGTCTGTCGCT 1578
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 833 CCTCATATTCGTATACCTTTTGATAATGATGAAACAGACGACATTACTTTGTCTGTCGCT 892
Query 1579 CACGAATCGTCAGAGGAGCCTCATGAATTCTCTCATCACCATCATCATGAAATTCCAGCG 1638
|| ||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||
Sbjct 893 CATGAATCTTCAGAGGAGCCTCATGAATTCTCTCGTCACCAACATCATGAAGTTCCAGCA 952
Query 1639 AAAGACAGTGTCGACAACCCTTTGAATCTTCCATCAGATCCACCATCTTCTGGTGATCAT 1698
||||||||||||||| || ||||| |||||||||||||||||||||||||| || ||||
Sbjct 953 AAAGACAGTGTCGAC--CC-TTTGACTCTTCCATCAGATCCACCATCTTCTGTTGCTCAT 1009
Query 1699 GTCACACTTCTGCCTCCACCGCCACCGCCACCTCCTCCCCCTCTTTTTACGAGCACAACT 1758
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
Sbjct 1010 GTCACACTTCTGCCTCCACCGCCACCGCCACCTCCTCCCCCTCCTTTTATGAGCACAGCC 1069
Query 1759 TCATTCTCACCCTCAC-AGCCACCCCCACCGCCACCTCCTCCCCCT 1803
||||| |||||| ||| | ||||||||||| || || |||| ||||
Sbjct 1070 TCATTTTCACCCCCACCA-CCACCCCCACCCCCGCCACCTCTCCCT 1114
Score = 521 bits (282), Expect = 1e-146
Identities = 308/320 (96%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 983 AATGTGACGTAATCAAAATTGATATCCAGTGCTGGGTTCAAGGAGATGTTGTACTGGAGT 1042
||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 336 AATGTCATGTAATCAAAATTGACATCCAGTGCTGGGTTCAAGGAGATGTTGTACTGGAGT 395
Query 1043 GTGTGCATATGGATTTGGATCCAGAACGAGAGGTTATGATGTTTCGTGTGATGTTTAATA 1102
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 396 GTGTGCATATGGATTTAGATCCAGAACGAGAGGTTATGATGTTTCGTGTGATGTTCAATA 455
Query 1103 CTGCATTTATCAGGTCCAACATACTAATGTTGAACTCTGACAACTTGGATATTCTTTGGG 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CTGCATTTATCAGGTCCAACATACTAATGTTGAACTCTGACAACTTGGATATTCTTTGGG 515
Query 1163 AGGCCAAGGATCATTACCCAAAAGGGTTTCGAGCAGAGGTCTTGTTTGGAGAAGTTGAGA 1222
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AAGCCAAGGATCATTACCCAAAAGGGTTTCGAGCAGAGGTCTTGTTTGGAGAAGTTGAGA 575
Query 1223 ATGCATCGCCTCAGAAAGTTCCAACCCCAATAGTAAATGGTGATGAGACTGGTGGATTGC 1282
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 576 ATGCCTCGCCTCAGAAAGTTCCCACCCCAATAGTAAATGGTGATGAGACTGGTGGATTAC 635
Query 1283 CCATTGAAGCCTTTTCTAGA 1302
| |||||||| ||| |||||
Sbjct 636 C-ATTGAAGC-TTT-CTAGA 652
Score = 475 bits (257), Expect = 1e-132
Identities = 301/321 (94%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 54 TTCAAAATTTGAAAACCAAACGTTCCCGATTTTCATCCTTTTGTCTTCTCCACCGGAAGC 113
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 23 TTCAAAATTTGAAAACCAAACGTTCCCGATTTTCATCCTTTTGTGTTCTCCACCGG-AGC 81
Query 114 CTTTGCGCCGCAATACCGCCGCCTCCGCCGCTTCAGCTGCATCGGTGATTGTAAATAGCC 173
|||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 82 CTTTACGCCGCAATACCGCCGCCTTCGCCGCTTCAGCTGCATCGGTGAATGTAAATAGCC 141
Query 174 GTCTTCTTATTCTAACAAGGTTCTTCCAATGTCTTTGTTAAGTAGATTCTTTTACAAGAG 233
||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 142 GTCGTCTTATTCTAATAAGCATCTTCCAATGTCTTTGTTAAGTAGGTTCTTTTACAAGAG 201
Query 234 ACCACCAGATGGATTACTTGAATTTGCTGATAGAGTTTATGTTTTTGATTCATGTTTTTG 293
|||||||||||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct 202 ACCACCAGATGGATTACTTGAATTTGCTGATAGA-TTT-T-T----GATTCATGTTTTTG 254
Query 294 CACGGAGGTGTTGGCTGATAGCTTGTATCAGATCTTCTTGCATGAAGTTATCAATGATTT 353
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 255 CACGGAGGTGTTGGCGGATAGCTTGTACCAAATCTTCTTGCATGAAGTTATCAATGATTT 314
Query 354 ACACGAAGAATTCCCGGAATC 374
|||||||||||||||||||||
Sbjct 315 ACACGAAGAATTCCCGGAATC 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159156770286
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5