BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G31812.1

Length=641
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473369 jgi|Araly1|473369|fgenesh2_kg.1__3323__AT1G31812.1         710    0.0  


> Ahg473369 jgi|Araly1|473369|fgenesh2_kg.1__3323__AT1G31812.1
Length=465

 Score =  710 bits (384),  Expect = 0.0
 Identities = 441/467 (94%), Gaps = 9/467 (2%)
 Strand=Plus/Plus

Query  16   CCCATATATATCTCACGCGTTGTCCTCGTCTTCTCCGTCTTACACTGATTTAATTCTCCT  75
            |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct  1    CCCATATATATCTCACGCGTCGTCCTCGTCTTCTCCGTCTTACAGTGATTTAATTCTCCT  60

Query  76   ACCAATCTCAACTTCCGACGTCTA-T--TCA-TCATGGGTTTGAAGGAGGAATTTGAGGA  131
            ||| |||||||||||| |||| || |  ||| ||||||||||||||||||||||||||||
Sbjct  61   ACCTATCTCAACTTCCTACGTTTATTCATCATTCATGGGTTTGAAGGAGGAATTTGAGGA  120

Query  132  GCACGCTGAGAAAGTGAATACGCTCACGGAGTTGCCATCCAACGAGGATTTGCTCATTCT  191
            |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||
Sbjct  121  GCACGCTGAGAAAGTGAATACGCTCACCAAGTTGCCATCAAACGAGGATTTGCTCATTCT  180

Query  192  CTACGGACTCTACAAGCAAGCCAAGTTTGGGCCTGTGGACACCAGTCGTCCTGGAATGTT  251
            ||| ||||||||||||||||||||||| |||  |||||||||||||||||||||||||||
Sbjct  181  CTATGGACTCTACAAGCAAGCCAAGTTCGGGAATGTGGACACCAGTCGTCCTGGAATGTT  240

Query  252  CAGCATGAAGGAGAGAGCCAAGTGGGATGCTTGGAAGGCTGTTGAAGGGAAATCATCGGA  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  CAGCATGAAGGAGAGAGCCAAGTGGGATGCTTGGAAGGCTGTTGAAGGGAAATCATCGGA  300

Query  312  AGAAGCCATGAATGACTATATCACTAAGGTCAAGCAACTCTTGGAAGTTGCTGCTTCCAA  371
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct  301  AGAAGCCATGAATGACTATATCACTAAGGTCAAGCAACTCTTGGAAGATGCTGCTTCCA-  359

Query  372  G-GCTTCAACCTGATG-AATCAAATCCTCATCTGCAGTAACTTTATCTTAAGCA-TCAAA  428
            | |||| ||||||||| ||||| |||||| |||||||||||||||||||||||| |||||
Sbjct  360  GTGCTTGAACCTGATGGAATCATATCCTCCTCTGCAGTAACTTTATCTTAAGCAATCAAA  419

Query  429  ATAACATTGCATAAGACTTGTTCTTGCTCTTGTGTTTCTATCATATT  475
             |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  420  -TAACATAGCATAAGACTTGTTCTTGCTCTTGTGTTTCTATCATATT  465



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23483716872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5