BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31814.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922249 jgi|Araly1|922249|scaffold_103530.1 782 0.0
> Ahg922249 jgi|Araly1|922249|scaffold_103530.1
Length=640
Score = 782 bits (423), Expect = 0.0
Identities = 563/628 (90%), Gaps = 20/628 (3%)
Strand=Plus/Plus
Query 900 ATTCATTTACGAGAATGAGATG-GTGGGTGAATTTGAACCAGTTTCGATTTTGAAAACTA 958
||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 2 ATTCATTTATGAGTTTGAGATGACT-GGTGAATTTGAACCAGTTTCGATTTTGAAAACTA 60
Query 959 GTTTGAAGAACTCTAGAGAAGCTGCTAAGAGAGTTTGTGCTGAAGGGAATTACTCTCTTA 1018
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 61 GTTTGAAGAACTCTAGAGAAGCTGCTAAGAGAGTTTGCGCTGAAGGGAATTACTCTCTCA 120
Query 1019 AGGTGCAGAACGAAGCTACTGATAAAGAACTAAGTGCTTTGAGAGCAGTTATCAAAGTCG 1078
||| ||||| |||||||| |||||||| |||||||||||||||||||| || |||||||
Sbjct 121 AGGCACAGAATGAAGCTACGGATAAAGAGCTAAGTGCTTTGAGAGCAGTGATTAAAGTCG 180
Query 1079 TGAAAGAGAAAAACATCGAGTCCGAGTT--CATGGAAGAGAAACTCGAAGAATGTGTTAA 1136
|||||||||||||||| ||||| ||||| | || ||||||||||||||||||| |||||
Sbjct 181 TGAAAGAGAAAAACATTGAGTCTGAGTTTTC-TG-AAGAGAAACTCGAAGAATGCGTTAA 238
Query 1137 GGAGTTGGAGGATCAGAAAGCTCAGAGGAAGCGTGCCACTAAGTTCAATTCACCTGCTAA 1196
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 239 GGAGTTGGAGGATCAGAAAGCTCAGAGGAAGCGTGCCACTAAGTTAAACTCACCTGCTAA 298
Query 1197 TCCCCAACAACCACAAGAACAAAAGGTCGATAATAAGCGTCCTCGAGTTGCTAATGGTTC 1256
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCCTCAACAACCACAACAGCAAAAGGTCGATAATAAGCGTCCTCGAGTTGCTAATGGTTC 358
Query 1257 AAGTATGGAATATAATTTGACAATCCCACCTCTGAGGCCGCAACAACAACCACCACTTTT 1316
|||||||||||||| ||||||||||||||||||||| | |||||||| | | ||||
Sbjct 359 AAGTATGGAATATAGTTTGACAATCCCACCTCTGAGTCAGCAACAAC--CT-C---TTTT 412
Query 1317 GCCTACTCCTAGTCAGATTTTACAAGTGAACCCATATGGTCTTTTAAGCTCAATACTT-C 1375
||||| |||||| |||| |||||||||||||||||||||||| || |||||||| || |
Sbjct 413 GCCTAATCCTAGCCAGAGTTTACAAGTGAACCCATATGGTCTCTTGAGCTCAATT-TTAC 471
Query 1376 CTGGTGTTGCTGTCCCATATGGCAACCCAAGGGCTCTATTTGGCTCGGTTCCAGCTCCAG 1435
||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||
Sbjct 472 CTGGTGTTGCTGTCCCATATGGCAACCCATTGGCACTATATGGCTCGGTTCCAGCTCCAG 531
Query 1436 CTTCTCGACCCGTCTTTTATGTGCAGCAAACTGGTTATGG-G-AT--GCCA--CCACCTC 1489
|| ||||||| |||||||||| |||||||||||||||||| | || | | |||||||
Sbjct 532 CTCCTCGACCAGTCTTTTATGAGCAGCAAACTGGTTATGGTGGATATGGGATGCCACCTC 591
Query 1490 AGTACCGCCCACCGTACTATCCTCAGTA 1517
| |||| || ||| ||||| ||||||||
Sbjct 592 AATACCACCTACCTTACTACCCTCAGTA 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5