BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31817.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922250 jgi|Araly1|922250|scaffold_103531.1 1496 0.0
Ahg937063 jgi|Araly1|937063|scaffold_501254.1 1489 0.0
> Ahg922250 jgi|Araly1|922250|scaffold_103531.1
Length=985
Score = 1496 bits (810), Expect = 0.0
Identities = 928/986 (94%), Gaps = 3/986 (0%)
Strand=Plus/Plus
Query 67 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTCTCTCGTCATCTTCGAGCTTCTTCACT 126
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTTTCTCGTTATCTTCGAGCTTCTTCACT 60
Query 127 TCTTTCATTAATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 186
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCGTCGTTGATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 120
Query 187 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGTGCCAGTTTCTGGAGAGTCTGCAAA 246
||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||
Sbjct 121 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGGGCCAGTTCCTGGAGACTCTGCAAA 180
Query 247 TAATTCAGGCTTATCAAACACGGGAAGAATCGGTTCCTCTCCGGAGCCTAATCCTTCGAC 306
||||||||| ||| |||||||||||||| |||||||| || |||||||||| ||| ||||
Sbjct 181 TAATTCAGGTTTACCAAACACGGGAAGATTCGGTTCCCCTTCGGAGCCTAACCCTCCGAC 240
Query 307 TTTGAGAACTTTTGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTCAATGGTTTCTC 366
| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 241 TCTGAGAACTTTCGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTAAACGGTTTCTC 300
Query 367 GGCTCCTAATGCTCCTCCTACCTTCAAAAGTTCACTGAGATCAAGATTACCAAACTCTCT 426
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 301 GGCTCCTAATGCTCCTCCTACCTTCAAAAATTCACTGAGATCAAGATTACCTAACTCCCT 360
Query 427 ACCTGATCAGTTCGGTCAGACGAATCCAGGCTTACCAAACACGGGAGGAAGCGGATTCTC 486
||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 361 ACCTGATCAGTTCAGTCAGACGAATCCAGGCTTACCAAACACTGGAGGAAGTGGATTCTC 420
Query 487 TGCTCCAAGTTTATCAAGCTACGAGAATTTCACTCAATCTTCTTCGCTTCTTAAGGAGAA 546
|||||| ||| ||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct 421 TGCTCCTAGTGTATCAAGCTACGAGAATTTCACTCAATCTTCA-C--TTCTCAATGAGAA 477
Query 547 TTCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 606
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 537
Query 607 AGGAAGGAGAACCGCAGGGATATTCTCTCATTTCCAACGCCCAAACCTCGAAACGAATGC 666
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 AGGAAGGAGAACCTCAGGGATATTCTCTCATTTCCATCGCCCAAACCTCGAAACGAATGC 597
Query 667 TGACATCATTCACATCAAGATGTTGAGGAACAACACTTTTGTCACGGTTACAGATTCCAA 726
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 598 TGACATCATTCACATCAAGATGTTGCGGAACAACACTTTTGTCACGGTTACAGATTCCAA 657
Query 727 AGGAAACGTCAAATGCAAAGCTACATCTGGTAGTTTACCCGATCTGAAAGGTGGAAGGAA 786
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 658 AGGAAACGTCAAATGCAAAGCAACATCCGGTAGTTTACCCGATCTGAAAGGTGGACGGAA 717
Query 787 GATGACGAATTACACAGCTGATGCAACCGCTGAAAACATTGGGAGAAGAGCTAAGGCTAT 846
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 718 GATGACAAATTACACAGCTGATGCAACCGCAGAAAACATTGGGAGAAGAGCTAAGGCTAT 777
Query 847 GGGGCTGAAATCTGTGGTGGTTAAGGTGAACGGATTTACGCATTTCGGAAAGAAGAAGAA 906
||| |||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct 778 GGGACTGAAATCTGTGGTTGTTAAGGTTAACGGATTTACACACTTCGGGAAGAAGAAGAA 837
Query 907 AGCTATTATCGCGTTTAGAGACGGTTTCACCAACTCGAGGTCTGATCAGAATCCGATAGT 966
||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 AGCCATTATTGCGTTTAGGGACGGTTTCACCAACTCTAGGTCTGATCAGAATCCGATAGT 897
Query 967 CTACATCGAGGACACTACTAGGAAAGCTCATAATGGTTGCAGATTACCAAGGAAACGTCG 1026
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 898 GTACATCGAGGACACGACTAGGAAAGCTCATAATGGTTGCAGATTACCAAAGAAACGTCG 957
Query 1027 GGTGTGAAAAGAAAACGTCCCATGTC 1052
|||||||||||||||| || ||||||
Sbjct 958 GGTGTGAAAAGAAAACATCGCATGTC 983
> Ahg937063 jgi|Araly1|937063|scaffold_501254.1
Length=982
Score = 1489 bits (806), Expect = 0.0
Identities = 927/986 (94%), Gaps = 6/986 (1%)
Strand=Plus/Plus
Query 67 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTCTCTCGTCATCTTCGAGCTTCTTCACT 126
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1 CAAAATTTGCTTCGAGAAGAAAATGAATGGTGTTTCTCGTTATCTTCGAGCTTCTTCACT 60
Query 127 TCTTTCATTAATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 186
|| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCGTCGTTGATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATC 120
Query 187 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGTGCCAGTTTCTGGAGAGTCTGCAAA 246
||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 121 TGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGGGCTAGTTCCTGGAGAGTCTGCAAA 180
Query 247 TAATTCAGGCTTATCAAACACGGGAAGAATCGGTTCCTCTCCGGAGCCTAATCCTTCGAC 306
||||||||||||| |||||||||||||| |||||||| || |||||||||| ||| ||||
Sbjct 181 TAATTCAGGCTTACCAAACACGGGAAGATTCGGTTCCCCTTCGGAGCCTAACCCTCCGAC 240
Query 307 TTTGAGAACTTTTGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTCAATGGTTTCTC 366
| |||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 241 TCTGAGAACTTTCGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTAAACGGTTTCTC 300
Query 367 GGCTCCTAATGCTCCTCCTACCTTCAAAAGTTCACTGAGATCAAGATTACCAAACTCTCT 426
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 301 GGCTCCTAATGCTCCTCCTACCTTCAAAAATTCACTGAGATCAAGATTACCTAACTCCCT 360
Query 427 ACCTGATCAGTTCGGTCAGACGAATCCAGGCTTACCAAACACGGGAGGAAGCGGATTCTC 486
||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||
Sbjct 361 ACCTGATCAGTTCAGTCAGACGAATCCAGGCTTACCAA-CT-GG-AGGAAGCGGATTCTC 417
Query 487 TGCTCCAAGTTTATCAAGCTACGAGAATTTCACTCAATCTTCTTCGCTTCTTAAGGAGAA 546
|||||| ||| ||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct 418 TGCTCCTAGTGTATCAAGCTACGAGAATTTCACTCAATCTTCA-C--TTCTCAATGAGAA 474
Query 547 TTCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 606
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGA 534
Query 607 AGGAAGGAGAACCGCAGGGATATTCTCTCATTTCCAACGCCCAAACCTCGAAACGAATGC 666
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 535 AGGAAGGAGAACCTCAGGGATATTCTCTCATTTCCATCGCCCAAACCTCGAAACGAATGC 594
Query 667 TGACATCATTCACATCAAGATGTTGAGGAACAACACTTTTGTCACGGTTACAGATTCCAA 726
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 595 TGACATCATTCACATCAAGATGTTGCGGAACAACACTTTTGTCACGGTTACAGATTCCAA 654
Query 727 AGGAAACGTCAAATGCAAAGCTACATCTGGTAGTTTACCCGATCTGAAAGGTGGAAGGAA 786
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 655 AGGAAACGTCAAATGCAAAGCAACATCCGGTAGTTTACCCGATCTGAAAGGTGGACGGAA 714
Query 787 GATGACGAATTACACAGCTGATGCAACCGCTGAAAACATTGGGAGAAGAGCTAAGGCTAT 846
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 715 GATGACAAATTACACAGCTGATGCAACCGCAGAAAACATTGGGAGAAGAGCTAAGGCTAT 774
Query 847 GGGGCTGAAATCTGTGGTGGTTAAGGTGAACGGATTTACGCATTTCGGAAAGAAGAAGAA 906
||| |||||||||||||| |||||||| ||||||||||| || ||||| |||||||||||
Sbjct 775 GGGACTGAAATCTGTGGTTGTTAAGGTTAACGGATTTACACACTTCGGGAAGAAGAAGAA 834
Query 907 AGCTATTATCGCGTTTAGAGACGGTTTCACCAACTCGAGGTCTGATCAGAATCCGATAGT 966
||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 835 AGCCATTATTGCGTTTAGGGACGGTTTCACCAACTCTAGGTCTGATCAGAATCCGATAGT 894
Query 967 CTACATCGAGGACACTACTAGGAAAGCTCATAATGGTTGCAGATTACCAAGGAAACGTCG 1026
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 895 GTACATCGAGGACACGACTAGGAAAGCTCATAATGGTTGCAGATTACCAAAGAAACGTCG 954
Query 1027 GGTGTGAAAAGAAAACGTCCCATGTC 1052
|||||||||||||||| || ||||||
Sbjct 955 GGTGTGAAAAGAAAACATCGCATGTC 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5