BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31820.1 Length=1728 Score E Sequences producing significant alignments: (Bits) Value Ahg922251 jgi|Araly1|922251|scaffold_103532.1 2106 0.0 Ahg922252 jgi|Araly1|922252|scaffold_103533.1 1162 0.0 > Ahg922251 jgi|Araly1|922251|scaffold_103532.1 Length=1487 Score = 2106 bits (1140), Expect = 0.0 Identities = 1356/1461 (93%), Gaps = 11/1461 (1%) Strand=Plus/Plus Query 32 TCATTACCATGGGAGACTATAACATGAATGAATTTGCTTATGGTAATCTTTACGATGATG 91 ||||||||||| ||||||||||||||||||| |||||||||||| |||| ||||||||| Sbjct 13 TCATTACCATGAGAGACTATAACATGAATGACTTTGCTTATGGTGCTCTTCACGATGATG 72 Query 92 ATGATGGCGATGTTGGTGGATCGTCTAAAGAAGGAAAC-AATTCGATTCAGAAAGTTTCA 150 ||||| |||| || | ||| ||||||| | | ||| |||||||| |||||||||||| Sbjct 73 ATGAT---GATGGTGTTCCATCCTCTAAAGCA-GCAACAAATTCGATACAGAAAGTTTCA 128 Query 151 ATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTTCGGTGCTGAA 210 |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| Sbjct 129 ATGTTACCACTCGTTTTCCTTATATTCTACGAAGTCTCAGGTGGTCCTTTTGGTGCTGAA 188 Query 211 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTGATCTTCCCTTTC 270 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 189 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTGGGGTTTGTGATCTTCCCTTTC 248 Query 271 ATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATGTTTCCAATAAAC 330 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 249 GTTTGGTGTATCCCTGAGGCACTAATCACTGCAGAGATGAGTACAATGTTCCCAATAAAT 308 Query 331 GGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACCTTTTGGGGGTTTCAAGTAGGT 390 || ||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct 309 GGGGGTTTCGTGGTTTGGGTCTCCTCTGCTTTAGGACCCTTTTGGGGGTTTCAAGTAGGT 368 Query 391 TGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCTGTTCTTTTCCTCGAT 450 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 369 TGGATGAAATGGCTTTGCGGTGTTATCGATAACGCTTTGTATCCTGTTCTCTTCCTCGAT 428 Query 451 TATTTGAAGTCCGCGGTCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 510 |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 429 TATTTGAAATCCGCTATCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 488 Query 511 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACC 570 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACT 548 Query 571 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCTGTAATGAGTCTGGTTTCTATT 630 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 549 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCGGTAATGAGTCTGGTTTCGATT 608 Query 631 CCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 690 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 609 CCACAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 668 Query 691 TATCTCAACACGCTTTTATGGAATCTGAACTACTGGGATTCGGTTAGTACACTGGCCGGT 750 ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||| Sbjct 669 TATCTCAACACGCTTTTCTGGAATCTAAACTATTGGGATTCGGTTAGTACACTAGCCGGT 728 Query 751 GAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTGTGTTACGGTGTTATCTTTGTC 810 ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 729 GAAGTGGCAAACCCGAAGCAAACACTTCCTAAGGCTTTGTCCTACGGTGTTATCTTTGTC 788 Query 811 GCTCTTTCGAACTTCCTCCCTCTTTTGTCTGGAACCGGGGCTATACCGTTGGATCGTGAG 870 |||||| | ||||||||||||||||||||||| || |||||||| ||| || |||||||| Sbjct 789 GCTCTTGCAAACTTCCTCCCTCTTTTGTCTGGGACAGGGGCTATCCCGCTGAATCGTGAG 848 Query 871 TTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGCCATCGGTGGAGGATGGTTACAA 930 |||||||| ||||| ||| ||||||| |||||| ||| || |||||||||||||| | Sbjct 849 TTATGGACGGATGGTTATTTAGCTGAAGTTGCTCTAGCTATTGGTGGAGGATGGTTGCGG 908 Query 931 TTGTGGGTTCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 990 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 909 TTGTGGGTTCAAGCGGCTGCCGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 968 Query 991 AGTGATTCCTTTCAGCTACTTGGAATGGCTGAACTCGGTATACTTCCCGAGATCTTTGCG 1050 |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 969 AGTGATTCGTTTCAGCTTCTTGGAATGGCTGAACTCGGTATGCTTCCCGAGATCTTTGCG 1028 Query 1051 CAAAGATCTCGCTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCCTCAGGTGTTTTA 1110 |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1029 AAAAGATCTCGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCTTCAGGTGTTTTA 1088 Query 1111 CTCTTGTCAGGATTAAGCTTTCAAGAGATTATAGCTGCAGAGAATTTGCTTTACTGTGGT 1170 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1089 CTCTTGTCTGGATTAAGCTTTCAAGAGATTGTAGCTGCAGAGAATTTGCTTTACTGTGGT 1148 Query 1171 GGAATGATTTTGGAGTTTATAGCATTTGTTAGACTGAGGA-AGAAACATCCGGCTGCATC 1229 ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| Sbjct 1149 GGAATGATTTTGGAGTTTATAGCATTTGTTAGAATGAGGATA-AAACATCCGGCTGCATC 1207 Query 1230 GAGACCGTATAAGATACCTGTTGGAACCGTTGGTTCGATTCTGATATGTGTCCCTCCGAT 1289 |||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||| || Sbjct 1208 GAGACCGTATAAGATACCCGTTGGAACCGTTGGTTCGATTTTGATCTGTGTTCCTCCCAT 1267 Query 1290 TGTACTGATATGTTTGGTTATTGTTCTATCTACTATTAAAGTGGCTCTT-GTGAGCTTTG 1348 ||||||||| ||||| ||| || | ||||||||| | || |||||| || |||||||||| Sbjct 1268 TGTACTGATCTGTTTCGTTGTTATCCTATCTACTCTCAAGGTGGCT-TTAGTGAGCTTTG 1326 Query 1349 TGATGGTGGTCATT-GGTTTCTTGATGAAACCTTGTTTAAATCATATGGATGGAAAGAAA 1407 ||||||| | ||| ||||||||||||||||||||||| || || || ||| |||||| | Sbjct 1327 TGATGGTAAT-ATTTGGTTTCTTGATGAAACCTTGTTTGAACCACATTGATCGAAAGAGA 1385 Query 1408 TGGGTCAAATTCTCAGTCTGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGT 1467 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1386 TGGGTCAAATTCTCAGTCAGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGG 1445 Query 1468 GAAGAGTCTTTGTTACGTTAG 1488 ||||||||||||||||||||| Sbjct 1446 GAAGAGTCTTTGTTACGTTAG 1466 > Ahg922252 jgi|Araly1|922252|scaffold_103533.1 Length=1526 Score = 1162 bits (629), Expect = 0.0 Identities = 1110/1339 (83%), Gaps = 46/1339 (3%) Strand=Plus/Plus Query 141 GAAAGTTTCAATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTT 200 ||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 158 GAAAGTTTCGATGTTGCCACTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTT 217 Query 201 CGGTGCTGA-AGG-TAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTG 258 |||| | | ||| |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 218 TGGTG-T-AGAGGATAGTGTGAATGCTGCTGGACCATTGTTAGCTCTTTTAGGGTTTGTG 275 Query 259 ATCTTCCCTTTCATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATG 318 ||||| |||||||||||| |||| |||||||| || |||||||| |||||| | |||||| Sbjct 276 ATCTTTCCTTTCATTTGGAGTATTCCTGAGGCTCTGATCACTGCAGAGATGGGCACAATG 335 Query 319 TTTCCA-ATAAACGGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACC-TTTTGGG 376 ||||| | || ||||||| |||||| |||||||||||||||||||| || ||||||| Sbjct 336 TTTCCCGAGAAT-GGCGGTTATGTTGTGTGGGTCTCCTCTGCTTTGGGG-CCATTTTGGG 393 Query 377 GGTTTCAAGTA-GGTTGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCT 435 ||||||| | | ||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 394 GGTTTCA-GCAAGGTTGGATGAAATGGCTGAGTGGTGTTATTGATAACGCTTTGTATCCT 452 Query 436 GTTCT-TTTCCTCGATTATTTGAAGTCCGCGG-TCCCGGCTTTAGCTA-CTGGTTTGCCA 492 ||||| |||| | ||||||||||| || | | |||||||| | | || | |||||||| Sbjct 453 GTTCTGTTTCTT-GATTATTTGAAATCTG-GAATCCCGGCTCTGGGTAGC-GGTTTGCCG 509 Query 493 AGAGTTGCAT-CGATCTTGATCTTGACTCTATTGCTT-ACTTA-CTTAAACTATAGAGGA 549 |||||||| | |||||||| | |||||| | ||| || || || || || ||| || ||| Sbjct 510 AGAGTTGC-TGCGATCTTGGTGTTGACTATTTTG-TTGACGTATCTGAA-CTACAGGGGA 566 Query 550 CTAACCATTGTTGGTTGGACCGCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCT 609 ||||| || ||||||||| |||||| |||||||||||||||| || |||||||||||| Sbjct 567 CTAACTATAGTTGGTTGGGTTGCTGTGCTTATGGGAGTTTTCTCGATCCTTCCGTTTGCT 626 Query 610 GTAATGAGTCTGGTTTCTATTCCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTA 669 || ||| || || |||| ||||||||| | |||||||| ||||||||||| ||||| ||| Sbjct 627 GTGATGGGTTTGATTTCGATTCCGCAGTTAGAGCCTTCAAGATGGCTTGTAATGGACTTA 686 Query 670 GGAAATGTCAACTGGAACTTGTATCTCAACACGCTTTTATGGAATCTGAACTACTGGGAT 729 || ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct 687 GGGAATGTGAACTGGAATTTGTATCTAAACACGCTTTTCTGGAATCTAAACTATTGGGAC 746 Query 730 TCGGTTAGTACACTGGCCGGTGAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTG 789 ||| | || ||||| || |||||||| | ||| || || | || ||||| ||||| ||| Sbjct 747 TCGATCAGCACACTAGCTGGTGAAGTCGAAAACCCAAACCATACGCTTCCAAAGGCGTTG 806 Query 790 TGTTACGGTGTTATCTTTGTCGCTCT-TTCGAACTTCCTCCCTCTTTTGTCTGGAACCGG 848 | ||||||||| ||||| || ||| | ||| || || ||||||||||| |||||| ||| Sbjct 807 TATTACGGTGTGATCTTAGTTGCT-TGTTCTTACATCTTCCCTCTTTTGGCTGGAATCGG 865 Query 849 GGCTATACCGTTGGATCGTGAGTTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGC 908 ||| || ||| | || |||||| |||||||||||| ||| | |||| || || ||||| Sbjct 866 GGCAATCCCGCTAGAGCGTGAGAAATGGACAGATGGGTATTTTTCTGACGTGGCCAAAGC 925 Query 909 -CATCGGTGGAG-GATGGTT-ACAATTGTGGGTTCAAGCGGCTGCAGCTACATCAAACAT 965 | ||||||||| | ||||| | | | |||||||||||| |||||||| ||||||||||| Sbjct 926 TC-TCGGTGGAGCG-TGGTTGAGA-TGGTGGGTTCAAGCAGCTGCAGCCACATCAAACAT 982 Query 966 GGGAATGTTTTTAGCCGAAATGAGTAGTGATTCCTTTCAGCTACTTGGAATGGCTGAACT 1025 |||||||||||||||||| ||||||||||| || |||||||| || ||||||||||| | Sbjct 983 GGGAATGTTTTTAGCCGAGATGAGTAGTGACTCTTTTCAGCTTCTCGGAATGGCTGAGCG 1042 Query 1026 CGGTATACTTCCCGAGATCTTTGCGCAAA-GATCTCGCTACGGGACACCTTTACTAGGGA 1084 |||||| ||||||||| |||| || |||| | || || |||||||||||||||||||||| Sbjct 1043 CGGTATGCTTCCCGAGTTCTTCGC-CAAAAGGTCACGTTACGGGACACCTTTACTAGGGA 1101 Query 1085 TTCTGTTTTCAGCCTCAGGTGTTTTACTCTTGTCA-GGATTAAGCTTTCAAGAGATTATA 1143 ||||||||||||| ||||| ||| | |||||||| || | |||||||||||||||| || Sbjct 1102 TTCTGTTTTCAGCTTCAGGCGTTGTGCTCTTGTCTTGGCT-AAGCTTTCAAGAGATTGTA 1160 Query 1144 GCTGCAGAGAATTTGCTTTACTGTGGTGGAATGATTTTGGAGTTTATAGCATTTGTTAGA 1203 ||||||||||| || || ||||| | ||||||||| |||||||||||||||||||||||| Sbjct 1161 GCTGCAGAGAACTTACTCTACTGCGTTGGAATGATCTTGGAGTTTATAGCATTTGTTAGA 1220 Query 1204 CTGAGGAA-GAAACATCCGGCTGCATCGAGACCGTATAAGATACCTGTTGGAACCGTTGG 1262 |||| || |||||| ||||||||||| |||||||| || |||||| |||||||| || Sbjct 1221 ATGAG-AATGAAACACCCGGCTGCATCAAGACCGTACAAAATACCTATTGGAACCACAGG 1279 Query 1263 TTCGATTCTGATATGTGTCCCTCCGATTGTACTGATATGTTTG--GTTATTGTTCTATC- 1319 |||||| || || ||||||||||| | |||| ||| |||| ||| | | || || Sbjct 1280 TTCGATCCTCATGTGTGTCCCTCCAACCATACT--TATCTTTGCTGTTGTAGCACTCTCG 1337 Query 1320 TACTATTAAAGTGGCT-CTTGTGAGCTTTGTGATGGTGGTCATTGGTTTCTTGATGAAAC 1378 | || ||||||| ||| | |||||| |||||||| || ||||||||||| | ||| | | Sbjct 1338 T-CTCTTAAAGTAGCTGCA-GTGAGCATTGTGATGATGATCATTGGTTTCGTAATGCATC 1395 Query 1379 CTTGTTTAAATCATATGGATGGAAAGAAATGGGTCAAATTCTC-AGTCTGTTCTGATTTG 1437 ||||| | || ||||||||| |||||| |||| |||| ||||| | || ||||||| || Sbjct 1396 CTTGTCTGAACCATATGGATCGAAAGAGATGGCTCAAGTTCTCCA-TCAGTTCTGACTTA 1454 Query 1438 GCAGAGTTTCAGAAGGAGA 1456 | || ||||| |||||| Sbjct 1455 CCGGACCTTCAGCAGGAGA 1473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64829596990 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5