BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31820.1
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922251 jgi|Araly1|922251|scaffold_103532.1 2106 0.0
Ahg922252 jgi|Araly1|922252|scaffold_103533.1 1162 0.0
> Ahg922251 jgi|Araly1|922251|scaffold_103532.1
Length=1487
Score = 2106 bits (1140), Expect = 0.0
Identities = 1356/1461 (93%), Gaps = 11/1461 (1%)
Strand=Plus/Plus
Query 32 TCATTACCATGGGAGACTATAACATGAATGAATTTGCTTATGGTAATCTTTACGATGATG 91
||||||||||| ||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 13 TCATTACCATGAGAGACTATAACATGAATGACTTTGCTTATGGTGCTCTTCACGATGATG 72
Query 92 ATGATGGCGATGTTGGTGGATCGTCTAAAGAAGGAAAC-AATTCGATTCAGAAAGTTTCA 150
||||| |||| || | ||| ||||||| | | ||| |||||||| ||||||||||||
Sbjct 73 ATGAT---GATGGTGTTCCATCCTCTAAAGCA-GCAACAAATTCGATACAGAAAGTTTCA 128
Query 151 ATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTTCGGTGCTGAA 210
|||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 129 ATGTTACCACTCGTTTTCCTTATATTCTACGAAGTCTCAGGTGGTCCTTTTGGTGCTGAA 188
Query 211 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTGATCTTCCCTTTC 270
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 189 GGTAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTGGGGTTTGTGATCTTCCCTTTC 248
Query 271 ATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATGTTTCCAATAAAC 330
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 249 GTTTGGTGTATCCCTGAGGCACTAATCACTGCAGAGATGAGTACAATGTTCCCAATAAAT 308
Query 331 GGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACCTTTTGGGGGTTTCAAGTAGGT 390
|| ||||| || |||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 309 GGGGGTTTCGTGGTTTGGGTCTCCTCTGCTTTAGGACCCTTTTGGGGGTTTCAAGTAGGT 368
Query 391 TGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCTGTTCTTTTCCTCGAT 450
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 369 TGGATGAAATGGCTTTGCGGTGTTATCGATAACGCTTTGTATCCTGTTCTCTTCCTCGAT 428
Query 451 TATTTGAAGTCCGCGGTCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 510
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TATTTGAAATCCGCTATCCCGGCTTTAGCTACTGGTTTGCCAAGAGTTGCATCGATCTTG 488
Query 511 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACC 570
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 ATCTTGACTCTATTGCTTACTTACTTAAACTATAGAGGACTAACCATTGTTGGTTGGACT 548
Query 571 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCTGTAATGAGTCTGGTTTCTATT 630
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 549 GCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCGGTAATGAGTCTGGTTTCGATT 608
Query 631 CCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 690
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 CCACAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAGGAAATGTCAACTGGAACTTG 668
Query 691 TATCTCAACACGCTTTTATGGAATCTGAACTACTGGGATTCGGTTAGTACACTGGCCGGT 750
||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 669 TATCTCAACACGCTTTTCTGGAATCTAAACTATTGGGATTCGGTTAGTACACTAGCCGGT 728
Query 751 GAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTGTGTTACGGTGTTATCTTTGTC 810
||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 729 GAAGTGGCAAACCCGAAGCAAACACTTCCTAAGGCTTTGTCCTACGGTGTTATCTTTGTC 788
Query 811 GCTCTTTCGAACTTCCTCCCTCTTTTGTCTGGAACCGGGGCTATACCGTTGGATCGTGAG 870
|||||| | ||||||||||||||||||||||| || |||||||| ||| || ||||||||
Sbjct 789 GCTCTTGCAAACTTCCTCCCTCTTTTGTCTGGGACAGGGGCTATCCCGCTGAATCGTGAG 848
Query 871 TTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGCCATCGGTGGAGGATGGTTACAA 930
|||||||| ||||| ||| ||||||| |||||| ||| || |||||||||||||| |
Sbjct 849 TTATGGACGGATGGTTATTTAGCTGAAGTTGCTCTAGCTATTGGTGGAGGATGGTTGCGG 908
Query 931 TTGTGGGTTCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 990
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 909 TTGTGGGTTCAAGCGGCTGCCGCTACATCAAACATGGGAATGTTTTTAGCCGAAATGAGT 968
Query 991 AGTGATTCCTTTCAGCTACTTGGAATGGCTGAACTCGGTATACTTCCCGAGATCTTTGCG 1050
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 969 AGTGATTCGTTTCAGCTTCTTGGAATGGCTGAACTCGGTATGCTTCCCGAGATCTTTGCG 1028
Query 1051 CAAAGATCTCGCTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCCTCAGGTGTTTTA 1110
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1029 AAAAGATCTCGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCTTCAGGTGTTTTA 1088
Query 1111 CTCTTGTCAGGATTAAGCTTTCAAGAGATTATAGCTGCAGAGAATTTGCTTTACTGTGGT 1170
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1089 CTCTTGTCTGGATTAAGCTTTCAAGAGATTGTAGCTGCAGAGAATTTGCTTTACTGTGGT 1148
Query 1171 GGAATGATTTTGGAGTTTATAGCATTTGTTAGACTGAGGA-AGAAACATCCGGCTGCATC 1229
||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 1149 GGAATGATTTTGGAGTTTATAGCATTTGTTAGAATGAGGATA-AAACATCCGGCTGCATC 1207
Query 1230 GAGACCGTATAAGATACCTGTTGGAACCGTTGGTTCGATTCTGATATGTGTCCCTCCGAT 1289
|||||||||||||||||| ||||||||||||||||||||| |||| ||||| ||||| ||
Sbjct 1208 GAGACCGTATAAGATACCCGTTGGAACCGTTGGTTCGATTTTGATCTGTGTTCCTCCCAT 1267
Query 1290 TGTACTGATATGTTTGGTTATTGTTCTATCTACTATTAAAGTGGCTCTT-GTGAGCTTTG 1348
||||||||| ||||| ||| || | ||||||||| | || |||||| || ||||||||||
Sbjct 1268 TGTACTGATCTGTTTCGTTGTTATCCTATCTACTCTCAAGGTGGCT-TTAGTGAGCTTTG 1326
Query 1349 TGATGGTGGTCATT-GGTTTCTTGATGAAACCTTGTTTAAATCATATGGATGGAAAGAAA 1407
||||||| | ||| ||||||||||||||||||||||| || || || ||| |||||| |
Sbjct 1327 TGATGGTAAT-ATTTGGTTTCTTGATGAAACCTTGTTTGAACCACATTGATCGAAAGAGA 1385
Query 1408 TGGGTCAAATTCTCAGTCTGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGT 1467
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TGGGTCAAATTCTCAGTCAGTTCTGATTTGGCAGAGTTTCAGAAGGAGAATTTGGATTGG 1445
Query 1468 GAAGAGTCTTTGTTACGTTAG 1488
|||||||||||||||||||||
Sbjct 1446 GAAGAGTCTTTGTTACGTTAG 1466
> Ahg922252 jgi|Araly1|922252|scaffold_103533.1
Length=1526
Score = 1162 bits (629), Expect = 0.0
Identities = 1110/1339 (83%), Gaps = 46/1339 (3%)
Strand=Plus/Plus
Query 141 GAAAGTTTCAATGTTACCACTCGTTTTCCTCATATTCTACGAAGTCTCAGGAGGTCCTTT 200
||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 158 GAAAGTTTCGATGTTGCCACTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTT 217
Query 201 CGGTGCTGA-AGG-TAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTAGGGTTTGTG 258
|||| | | ||| |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 218 TGGTG-T-AGAGGATAGTGTGAATGCTGCTGGACCATTGTTAGCTCTTTTAGGGTTTGTG 275
Query 259 ATCTTCCCTTTCATTTGGTGTATCCCTGAGGCACTAATCACTGCGGAGATGAGTACAATG 318
||||| |||||||||||| |||| |||||||| || |||||||| |||||| | ||||||
Sbjct 276 ATCTTTCCTTTCATTTGGAGTATTCCTGAGGCTCTGATCACTGCAGAGATGGGCACAATG 335
Query 319 TTTCCA-ATAAACGGCGGTTTTGTTGTTTGGGTCTCCTCTGCTTTGGGAACC-TTTTGGG 376
||||| | || ||||||| |||||| |||||||||||||||||||| || |||||||
Sbjct 336 TTTCCCGAGAAT-GGCGGTTATGTTGTGTGGGTCTCCTCTGCTTTGGGG-CCATTTTGGG 393
Query 377 GGTTTCAAGTA-GGTTGGATGAAATGGCTTTGCGGTGTTATTGATAACGCTTTGTATCCT 435
||||||| | | ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 394 GGTTTCA-GCAAGGTTGGATGAAATGGCTGAGTGGTGTTATTGATAACGCTTTGTATCCT 452
Query 436 GTTCT-TTTCCTCGATTATTTGAAGTCCGCGG-TCCCGGCTTTAGCTA-CTGGTTTGCCA 492
||||| |||| | ||||||||||| || | | |||||||| | | || | ||||||||
Sbjct 453 GTTCTGTTTCTT-GATTATTTGAAATCTG-GAATCCCGGCTCTGGGTAGC-GGTTTGCCG 509
Query 493 AGAGTTGCAT-CGATCTTGATCTTGACTCTATTGCTT-ACTTA-CTTAAACTATAGAGGA 549
|||||||| | |||||||| | |||||| | ||| || || || || || ||| || |||
Sbjct 510 AGAGTTGC-TGCGATCTTGGTGTTGACTATTTTG-TTGACGTATCTGAA-CTACAGGGGA 566
Query 550 CTAACCATTGTTGGTTGGACCGCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCT 609
||||| || ||||||||| |||||| |||||||||||||||| || ||||||||||||
Sbjct 567 CTAACTATAGTTGGTTGGGTTGCTGTGCTTATGGGAGTTTTCTCGATCCTTCCGTTTGCT 626
Query 610 GTAATGAGTCTGGTTTCTATTCCGCAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTA 669
|| ||| || || |||| ||||||||| | |||||||| ||||||||||| ||||| |||
Sbjct 627 GTGATGGGTTTGATTTCGATTCCGCAGTTAGAGCCTTCAAGATGGCTTGTAATGGACTTA 686
Query 670 GGAAATGTCAACTGGAACTTGTATCTCAACACGCTTTTATGGAATCTGAACTACTGGGAT 729
|| ||||| |||||||| |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 687 GGGAATGTGAACTGGAATTTGTATCTAAACACGCTTTTCTGGAATCTAAACTATTGGGAC 746
Query 730 TCGGTTAGTACACTGGCCGGTGAAGTGGCAAATCCGAAGAAAACACTTCCTAAGGCTTTG 789
||| | || ||||| || |||||||| | ||| || || | || ||||| ||||| |||
Sbjct 747 TCGATCAGCACACTAGCTGGTGAAGTCGAAAACCCAAACCATACGCTTCCAAAGGCGTTG 806
Query 790 TGTTACGGTGTTATCTTTGTCGCTCT-TTCGAACTTCCTCCCTCTTTTGTCTGGAACCGG 848
| ||||||||| ||||| || ||| | ||| || || ||||||||||| |||||| |||
Sbjct 807 TATTACGGTGTGATCTTAGTTGCT-TGTTCTTACATCTTCCCTCTTTTGGCTGGAATCGG 865
Query 849 GGCTATACCGTTGGATCGTGAGTTATGGACAGATGGATATCTAGCTGAGGTTGCTAAAGC 908
||| || ||| | || |||||| |||||||||||| ||| | |||| || || |||||
Sbjct 866 GGCAATCCCGCTAGAGCGTGAGAAATGGACAGATGGGTATTTTTCTGACGTGGCCAAAGC 925
Query 909 -CATCGGTGGAG-GATGGTT-ACAATTGTGGGTTCAAGCGGCTGCAGCTACATCAAACAT 965
| ||||||||| | ||||| | | | |||||||||||| |||||||| |||||||||||
Sbjct 926 TC-TCGGTGGAGCG-TGGTTGAGA-TGGTGGGTTCAAGCAGCTGCAGCCACATCAAACAT 982
Query 966 GGGAATGTTTTTAGCCGAAATGAGTAGTGATTCCTTTCAGCTACTTGGAATGGCTGAACT 1025
|||||||||||||||||| ||||||||||| || |||||||| || ||||||||||| |
Sbjct 983 GGGAATGTTTTTAGCCGAGATGAGTAGTGACTCTTTTCAGCTTCTCGGAATGGCTGAGCG 1042
Query 1026 CGGTATACTTCCCGAGATCTTTGCGCAAA-GATCTCGCTACGGGACACCTTTACTAGGGA 1084
|||||| ||||||||| |||| || |||| | || || ||||||||||||||||||||||
Sbjct 1043 CGGTATGCTTCCCGAGTTCTTCGC-CAAAAGGTCACGTTACGGGACACCTTTACTAGGGA 1101
Query 1085 TTCTGTTTTCAGCCTCAGGTGTTTTACTCTTGTCA-GGATTAAGCTTTCAAGAGATTATA 1143
||||||||||||| ||||| ||| | |||||||| || | |||||||||||||||| ||
Sbjct 1102 TTCTGTTTTCAGCTTCAGGCGTTGTGCTCTTGTCTTGGCT-AAGCTTTCAAGAGATTGTA 1160
Query 1144 GCTGCAGAGAATTTGCTTTACTGTGGTGGAATGATTTTGGAGTTTATAGCATTTGTTAGA 1203
||||||||||| || || ||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 1161 GCTGCAGAGAACTTACTCTACTGCGTTGGAATGATCTTGGAGTTTATAGCATTTGTTAGA 1220
Query 1204 CTGAGGAA-GAAACATCCGGCTGCATCGAGACCGTATAAGATACCTGTTGGAACCGTTGG 1262
|||| || |||||| ||||||||||| |||||||| || |||||| |||||||| ||
Sbjct 1221 ATGAG-AATGAAACACCCGGCTGCATCAAGACCGTACAAAATACCTATTGGAACCACAGG 1279
Query 1263 TTCGATTCTGATATGTGTCCCTCCGATTGTACTGATATGTTTG--GTTATTGTTCTATC- 1319
|||||| || || ||||||||||| | |||| ||| |||| ||| | | || ||
Sbjct 1280 TTCGATCCTCATGTGTGTCCCTCCAACCATACT--TATCTTTGCTGTTGTAGCACTCTCG 1337
Query 1320 TACTATTAAAGTGGCT-CTTGTGAGCTTTGTGATGGTGGTCATTGGTTTCTTGATGAAAC 1378
| || ||||||| ||| | |||||| |||||||| || ||||||||||| | ||| | |
Sbjct 1338 T-CTCTTAAAGTAGCTGCA-GTGAGCATTGTGATGATGATCATTGGTTTCGTAATGCATC 1395
Query 1379 CTTGTTTAAATCATATGGATGGAAAGAAATGGGTCAAATTCTC-AGTCTGTTCTGATTTG 1437
||||| | || ||||||||| |||||| |||| |||| ||||| | || ||||||| ||
Sbjct 1396 CTTGTCTGAACCATATGGATCGAAAGAGATGGCTCAAGTTCTCCA-TCAGTTCTGACTTA 1454
Query 1438 GCAGAGTTTCAGAAGGAGA 1456
| || ||||| ||||||
Sbjct 1455 CCGGACCTTCAGCAGGAGA 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64829596990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5