BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31830.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922252 jgi|Araly1|922252|scaffold_103533.1 2350 0.0
Ahg922251 jgi|Araly1|922251|scaffold_103532.1 1219 0.0
> Ahg922252 jgi|Araly1|922252|scaffold_103533.1
Length=1526
Score = 2350 bits (1272), Expect = 0.0
Identities = 1446/1530 (95%), Gaps = 11/1530 (1%)
Strand=Plus/Plus
Query 196 TTTAAAATCTGGATGACGTTATGCAGAAGCGGAGAATCATCACTGTGAACCCCTCCGCGT 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 TTTAAAATCTGGATGACGTTATGCAGAAGCGGAGAATCATCACTGTGAACCCCTCGGCGT 60
Query 256 CTATTGAGATGAGTCAGTACGAG-AATAATGAAGTTCCTTACTCAAGTGTCGGTGCTGAT 314
||||||||||||| |||||| || |||||||| |||||||||||||||||||||| ||||
Sbjct 61 CTATTGAGATGAGACAGTAC-AGTAATAATGACGTTCCTTACTCAAGTGTCGGTGATGAT 119
Query 315 GAGGTTCCATCATCACCGCCTAAAGCTACCGATAAGATTCGGAAAGTTTCCATGTTGCCA 374
|||||||| |||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 120 GAGGTTCCGTCAT---CGCCTAAAGCTACCGATAAGATTAGGAAAGTTTCGATGTTGCCA 176
Query 375 CTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTTTGGTGTAGAGGATAGTGTG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 CTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTTTGGTGTAGAGGATAGTGTG 236
Query 435 AATGCAGCAGGACCATTATTAGCTCTTCTAGGGTTTGTGATCTTTCCTTTCATTTGGAGT 494
||||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 237 AATGCTGCTGGACCATTGTTAGCTCTTTTAGGGTTTGTGATCTTTCCTTTCATTTGGAGT 296
Query 495 ATCCCTGAGGCTTTGATTACTGCGGAGATGGGAACAATGTATCCCGAGAATGGTGGTTAT 554
|| ||||||||| |||| ||||| |||||||| ||||||| |||||||||||| ||||||
Sbjct 297 ATTCCTGAGGCTCTGATCACTGCAGAGATGGGCACAATGTTTCCCGAGAATGGCGGTTAT 356
Query 555 GTTGTGTGGGTTTCCTCTGCTTTGGGACCTTTTTGGGGGTTTCAGCAAGGTTGGATGAAA 614
||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 357 GTTGTGTGGGTCTCCTCTGCTTTGGGGCCATTTTGGGGGTTTCAGCAAGGTTGGATGAAA 416
Query 615 TGGCTTAGTGGTGTTATTGATAACGCTTTGTATCCTGTTCTGTTTCTTGACTATTTGAAG 674
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 TGGCTGAGTGGTGTTATTGATAACGCTTTGTATCCTGTTCTGTTTCTTGATTATTTGAAA 476
Query 675 TCTGGAGTCCCGGCTTTAGGTAGCGGTTTACCGAGAGTTGCAT-CGATCTTGGTGCTGAC 733
|||||| |||||||| | ||||||||||| ||||||||||| | ||||||||||| ||||
Sbjct 477 TCTGGAATCCCGGCTCTGGGTAGCGGTTTGCCGAGAGTTGC-TGCGATCTTGGTGTTGAC 535
Query 734 TATTTTGTTGACGTATCTGAACTACAGGGGACTAACTATAGTTGGTTGGGTTGCTGTGCT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TATTTTGTTGACGTATCTGAACTACAGGGGACTAACTATAGTTGGTTGGGTTGCTGTGCT 595
Query 794 TATGGGAGTTTTCTCCATCCTTCCGTTTGCTGTGATGGGTTTGATTTCGATTCCGCAGCT 853
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 596 TATGGGAGTTTTCTCGATCCTTCCGTTTGCTGTGATGGGTTTGATTTCGATTCCGCAGTT 655
Query 854 AGAGCCTTCGAGATGGCTTGTGATGGACTTAGGGAATGTGAACTGGAATTTGTATCTTAA 913
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 656 AGAGCCTTCAAGATGGCTTGTAATGGACTTAGGGAATGTGAACTGGAATTTGTATCTAAA 715
Query 914 CACGCTTTTCTGGAATCTAAACTATTGGGACTCGATTAGTACACTAGCTGGTGAAGTTGA 973
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 716 CACGCTTTTCTGGAATCTAAACTATTGGGACTCGATCAGCACACTAGCTGGTGAAGTCGA 775
Query 974 AAACCCCAACCATACACTTCCAAAGGCTTTGTTTTATGGTGTGATCTTAGTTGCTTGTTC 1033
|||||| |||||||| ||||||||||| |||| ||| |||||||||||||||||||||||
Sbjct 776 AAACCCAAACCATACGCTTCCAAAGGCGTTGTATTACGGTGTGATCTTAGTTGCTTGTTC 835
Query 1034 TTACATCTTCCCTCTTTTGGCTGGAATCGGGGCAATCCCGCTAGAGCGTGAGAAATGGAC 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 TTACATCTTCCCTCTTTTGGCTGGAATCGGGGCAATCCCGCTAGAGCGTGAGAAATGGAC 895
Query 1094 AGATGGGTATTTTTCTGATGTGGCCAAAGCTCTTGGTGGAGCGTGGTTGAGATGGTGGGT 1153
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 896 AGATGGGTATTTTTCTGACGTGGCCAAAGCTCTCGGTGGAGCGTGGTTGAGATGGTGGGT 955
Query 1154 TCAAGCGGCTGCAGCTACATCAAACATGGGAATGTTTATAGCCGAGATGAGTAGTGACTC 1213
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 956 TCAAGCAGCTGCAGCCACATCAAACATGGGAATGTTTTTAGCCGAGATGAGTAGTGACTC 1015
Query 1214 TTTTCAGCTTCTCGGAATGGCTGAGCGCGGTATGCTTCCCGAGTTCTTTGCCAAAAGGTC 1273
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1016 TTTTCAGCTTCTCGGAATGGCTGAGCGCGGTATGCTTCCCGAGTTCTTCGCCAAAAGGTC 1075
Query 1274 ACGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCGTCAGGTGTTGTTCTCTTGTC 1333
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1076 ACGTTACGGGACACCTTTACTAGGGATTCTGTTTTCAGCTTCAGGCGTTGTGCTCTTGTC 1135
Query 1334 TTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAGAACTTACTCTACTGCGTTGGTATGAT 1393
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1136 TTGGCTAAGCTTTCAAGAGATTGTAGCTGCAGAGAACTTACTCTACTGCGTTGGAATGAT 1195
Query 1394 CTTAGAGTTTATAGCGTTTGTTAGAATGAGAATGAAACACCCTGCTGCATCAAGACCGTA 1453
||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1196 CTTGGAGTTTATAGCATTTGTTAGAATGAGAATGAAACACCCGGCTGCATCAAGACCGTA 1255
Query 1454 CAAGATACCTATTGGAACCACAGGTTCGATCCTCATGTGTATTCCTCCAACCATACTGAT 1513
||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 1256 CAAAATACCTATTGGAACCACAGGTTCGATCCTCATGTGTGTCCCTCCAACCATACTTAT 1315
Query 1514 CTGTGCTGTTGTAGCACTCTCGTCTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGAT 1573
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 CTTTGCTGTTGTAGCACTCTCGTCTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGAT 1375
Query 1574 CATTGGTTTCCTGATACATCCTT-TACTGAACCATATGGATCGAAAGAGATGGGTCAAAT 1632
|||||||||| | || ||||||| | ||||||||||||||||||||||||||| |||| |
Sbjct 1376 CATTGGTTTCGTAATGCATCCTTGT-CTGAACCATATGGATCGAAAGAGATGGCTCAAGT 1434
Query 1633 TCTCCATCAGTTCTGACTTACCGGACCTTCAACAGCAGACTCGGGAATACGAAGAAACTC 1692
||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 1435 TCTCCATCAGTTCTGACTTACCGGACCTTCAGCAGGAGACTCGGGAGCACGAAGAAACTC 1494
Query 1693 TAATACGTTAAGAA-TGTCCTTAGTTATTT 1721
|||||||||| | | ||| ||| ||| |||
Sbjct 1495 TAATACGTTA-GCAGTGTTCTTTGTTCTTT 1523
> Ahg922251 jgi|Araly1|922251|scaffold_103532.1
Length=1487
Score = 1219 bits (660), Expect = 0.0
Identities = 1106/1317 (84%), Gaps = 48/1317 (4%)
Strand=Plus/Plus
Query 356 GAAAGTTTCCATGTTGCCACTTGTTTTCCTCATATTCTATGAAGTCTCAGGAGGTCCTTT 415
||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct 119 GAAAGTTTCAATGTTACCACTCGTTTTCCTTATATTCTACGAAGTCTCAGGTGGTCCTTT 178
Query 416 TGGTG-TAG-AGGATAGTGTGAATGCAGCAGGACCATTATTAGCTCTTCTAGGGTTTGTG 473
||||| | | ||| |||||||||||||||||||||||| ||||||||| | |||||||||
Sbjct 179 TGGTGCT-GAAGG-TAGTGTGAATGCAGCAGGACCATTGTTAGCTCTTTTGGGGTTTGTG 236
Query 474 ATCTTTCCTTTCATTTGGAGTATCCCTGAGGCTTTGATTACTGCGGAGATGGGAACAATG 533
||||| |||||| ||||| ||||||||||||| | || ||||| |||||| | ||||||
Sbjct 237 ATCTTCCCTTTCGTTTGGTGTATCCCTGAGGCACTAATCACTGCAGAGATGAGTACAATG 296
Query 534 TATCCCGA-GAATGGTGGTTAT-GTTGTGTGGGTTTCCTCTGCTTTGGGACCTTTTTGGG 591
| |||| | ||||| |||| | || || ||||| ||||||||||| ||||| |||||||
Sbjct 297 T-TCCCAATAAATGGGGGTT-TCGTGGTTTGGGTCTCCTCTGCTTTAGGACCCTTTTGGG 354
Query 592 GGTTTC-AGCAAGGTTGGATGAAATGGCTTAGTGGTGTTATTGATAACGCTTTGTATCCT 650
|||||| || ||||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct 355 GGTTTCAAG-TAGGTTGGATGAAATGGCTTTGCGGTGTTATCGATAACGCTTTGTATCCT 413
Query 651 GTTCTGTTTCTTGACTATTTGAAGTCTG-GAGTCCCGGCTTTAGGTAGC-GGTTTACCGA 708
||||| || || || |||||||| || | | |||||||||||| || | ||||| || |
Sbjct 414 GTTCTCTTCCTCGATTATTTGAAATCCGCTA-TCCCGGCTTTAGCTA-CTGGTTTGCCAA 471
Query 709 GAGTTGCATCGATCTTGGTGC-TGACTATTTTG-TTGACGTATC-TGAACTACAGGGGAC 765
||||||||||||||||| | | ||||| | ||| || || || | | ||||| || ||||
Sbjct 472 GAGTTGCATCGATCTTGAT-CTTGACTCTATTGCTT-ACTTA-CTTAAACTATAGAGGAC 528
Query 766 TAACTATAGTTGGTTGGGTTGCTGTGCTTATGGGAGTTTTCTCCATCCTTCCGTTTGCTG 825
|||| || ||||||||| ||||||| |||||||||||||||| || ||||||||||| |
Sbjct 529 TAACCATTGTTGGTTGGACTGCTGTGTTTATGGGAGTTTTCTCTATGCTTCCGTTTGCGG 588
Query 826 TGATGGGTTTGATTTCGATTCCGCAGCTAGAGCCTTCGAGATGGCTTGTGATGGACTTAG 885
| ||| || || |||||||||| ||||| |||||||||||||||||||||||||| ||||
Sbjct 589 TAATGAGTCTGGTTTCGATTCCACAGCTCGAGCCTTCGAGATGGCTTGTGATGGATTTAG 648
Query 886 GGAATGTGAACTGGAATTTGTATCTTAACACGCTTTTCTGGAATCTAAACTATTGGGACT 945
| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 649 GAAATGTCAACTGGAACTTGTATCTCAACACGCTTTTCTGGAATCTAAACTATTGGGATT 708
Query 946 CGATTAGTACACTAGCTGGTGAAGTTGAAAACCCCAACCATACACTTCCAAAGGCTTTGT 1005
|| ||||||||||||| |||||||| | |||||| || || |||||||| ||||||||||
Sbjct 709 CGGTTAGTACACTAGCCGGTGAAGTGGCAAACCCGAAGCAAACACTTCCTAAGGCTTTGT 768
Query 1006 TTTATGGTGTGATCTTAGTTGCTTGTT-CTTACATCTTCCCTCTTTTGGCTGGAATC-GG 1063
|| ||||| ||||| || || | || | || || ||||||||||| |||| | | ||
Sbjct 769 CCTACGGTGTTATCTTTGTCGC-TCTTGCAAACTTCCTCCCTCTTTTGTCTGGGA-CAGG 826
Query 1064 GGCAATCCCGCTAG-AGCGTGAGAAATGGACAGATGGGTATTTTTCTGATGTGGC-CAAA 1121
||| |||||||| | | |||||| |||||| ||||| ||||| |||| || || | |
Sbjct 827 GGCTATCCCGCT-GAATCGTGAGTTATGGACGGATGGTTATTTAGCTGAAGTTGCTC-TA 884
Query 1122 GCTCTTGGTGGAGCG-TGGTTGAGATGGTGGGTTCAAGCGGCTGCAGCTACATCAAACAT 1180
||| ||||||||| | |||||| | | |||||||||||||||||| ||||||||||||||
Sbjct 885 GCTATTGGTGGAG-GATGGTTGCGGTTGTGGGTTCAAGCGGCTGCCGCTACATCAAACAT 943
Query 1181 GGGAATGTTTATAGCCGAGATGAGTAGTGACTCTTTTCAGCTTCTCGGAATGGCTGAGCG 1240
|||||||||| ||||||| ||||||||||| || ||||||||||| ||||||||||| |
Sbjct 944 GGGAATGTTTTTAGCCGAAATGAGTAGTGATTCGTTTCAGCTTCTTGGAATGGCTGAACT 1003
Query 1241 CGGTATGCTTCCCGAGTTCTTTGCCAAAAGGTCACGTTACGGGACACCTTTACTAGGGAT 1300
|||||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 1004 CGGTATGCTTCCCGAGATCTTTGCGAAAAGATCTCGTTACGGGACACCTTTACTAGGGAT 1063
Query 1301 TCTGTTTTCAGCGTCAGGTGTTGTT-CTCTTGTCTTGGCT-AAGCTTTCAAGAGATTGTA 1358
|||||||||||| ||||||||| || ||||||||| || | |||||||||||||||||||
Sbjct 1064 TCTGTTTTCAGCTTCAGGTGTT-TTACTCTTGTCT-GGATTAAGCTTTCAAGAGATTGTA 1121
Query 1359 GCTGCAGAGAACTTACTCTACTGCGTTGGTATGATCTTAGAGTTTATAGCGTTTGTTAGA 1418
||||||||||| || || ||||| | ||| ||||| || ||||||||||| |||||||||
Sbjct 1122 GCTGCAGAGAATTTGCTTTACTGTGGTGGAATGATTTTGGAGTTTATAGCATTTGTTAGA 1181
Query 1419 ATGAGAATGAAACACCCTGCTGCATCAAGACCGTACAAGATACCTATTGGAACCACAGGT 1478
||||| || ||||| || |||||||| |||||||| |||||||| |||||||| |||
Sbjct 1182 ATGAGGATAAAACATCCGGCTGCATCGAGACCGTATAAGATACCCGTTGGAACCGTTGGT 1241
Query 1479 TCGATCCTCATGTGTATTCCTCCAACCATACTGATCTGTG-CTGTTGT-AGCACTCTCGT 1536
||||| | || ||| ||||||| | ||||||||||| | ||||| | | || || |
Sbjct 1242 TCGATTTTGATCTGTGTTCCTCCCATTGTACTGATCTGTTTC-GTTGTTATC-CTATC-T 1298
Query 1537 -CTCTTAAAGTAGCTGCAGTGAGCATTGTGATGATGATCATT-GGTTTCCTGAT-ACATC 1593
|||| || || ||| ||||||| |||||||| | || ||| |||||| |||| | | |
Sbjct 1299 ACTCTCAAGGTGGCTTTAGTGAGCTTTGTGATGGTAAT-ATTTGGTTTCTTGATGAAA-C 1356
Query 1594 CTT-TACTGAACCATATGGATCGAAAGAGATGGGTCAAATTCTCCA-TCAGTTCTGA 1648
||| | ||||||| || |||||||||||||||||||||||||| | ||||||||||
Sbjct 1357 CTTGTT-TGAACCACATTGATCGAAAGAGATGGGTCAAATTCTC-AGTCAGTTCTGA 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5