BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31840.1
Length=2523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912989 jgi|Araly1|912989|Al_scaffold_0001_3243 2158 0.0
> Ahg912989 jgi|Araly1|912989|Al_scaffold_0001_3243
Length=2070
Score = 2158 bits (1168), Expect = 0.0
Identities = 1381/1484 (93%), Gaps = 14/1484 (1%)
Strand=Plus/Plus
Query 602 CTGATCA-TTTTGATAAACTATGTAGAGGAGGAATTGAGCCTTCAGGTGTGAGTGCTCAT 660
||||| | |||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 278 CTGAT-AGTTTTGATAAACTATGTAGAGGAGGAACTGTGCCTTTTGGTGTGAGTGCTCAT 336
Query 661 GGATTTGTGTTGGATGCTCTTTTCTGCAAAGGAGAGGTTACAAAGGCTTTAGATTTTCAT 720
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 337 GGATTTGTGTTGGATGCTCTTTTCCGAAAAGGAGAGGTTACAAAGGCTTTAGATTTTCAC 396
Query 721 CGACTAGTGATGGAGAGAGGTTTTCGTGTTGGTATAGTTTCTTGCAATAAGGTTTTGAAG 780
|| |||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||
Sbjct 397 CGGCTAGTGATGGAGAGAGGTTTTCGTGTTGATATAGTTTCTTGTAATAAGATTTTAAAG 456
Query 781 GGTCTTTCAGTTGATCAGATTGAGGTAGCTTCTCGGTTGTTAAGTTTGGTTTTGGATTGT 840
|||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 457 GGTCTTTCGGTTGATCAGATAGAGGTAGCTTCTCGGATGTTAAGTTTGGTGTTGGATTGT 516
Query 841 GGTCCGGCACCTAATGTGGTGACTTTTTGCACGTTGATTAATGGGTTTTGCAAAAGAGGT 900
|||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 517 GGTCCGGCACCTAATGTGGTGAGTTTTTGTACGGTGATTAATGGGTTTTGCAAAAGAGGC 576
Query 901 GAAATGGATAGAGCATTCGATCTTTTTAAAGTTATGGAACAGAGAGGGATAGAGCCAGAC 960
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 577 GAAATGGATAGAGCATTCGAGCTTTTTAAAGTTATGGAACAGAGAGGGATAGCGCCAGAC 636
Query 961 TTGATCGCTTACAGTACTCTGATTGATGGATACTTCAAAGCAGGGATGTTAGGAATGGGT 1020
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 637 TTGATCGCTTACAGCACTCTGATTGATGGATACTTCAAAGCGGGGATGTTAGGAATGGGT 696
Query 1021 CATAAGCTTTTCTCGCAGGCCTTACATAAAGGTGTGAAGTTGGACGTGGTTGTGTTCAGT 1080
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 697 CATAAACTTTTCTCGCAGGCCTTACATAAAGGCGTGAAGTTGGACGTGGTTGTCTTCAGT 756
Query 1081 TCAACGATTGATGTATATGTAAAA-TCTGGGGATTTAGCAACAGC-TTCTGTTGTGTACA 1138
||||| |||||||||||||||||| || ||| ||||| ||||||| || || ||||||||
Sbjct 757 TCAACCATTGATGTATATGTAAAATTC-GGGTATTTAACAACAGCGTT-TGATGTGTACA 814
Query 1139 AGAGAATGTTGTGTCAAGGGATTTCCCCTAATGTGGTTACTTACACCATTCTCATAAAAG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGAGAATGTTGTGTCAAGGGATTTCCCCTAATGTGGTTACTTACACCATTCTCATAAAAG 874
Query 1199 GCTTGTGCCAGGATGGTAGGATTTACGAAGCTTTTGGTATGTATGGTCAGATCTTGAAAC 1258
|||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||
Sbjct 875 GCTTGTGCCAGGATGGTAGGATTTACGAGGCTTTTGGGATATATTGTCAGATCTTGAAAC 934
Query 1259 GTGGTATGGAGCCATCTATTGTAACTTATAGCAGTCTCATTGATGGTTTTTGCAAGTGTG 1318
||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 935 GTGGTCTGGAGCCATCCGTTGTCACTTATAGCAGTCTCATTGATGGTTTTTGCAAGTATG 994
Query 1319 GGAACTTGAGATCCGGGTTTGCTTTATATGAGGATATGATAAAGATGGGTTATCCACCTG 1378
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 995 GGAACTTGAGATCCGGGTTTGCTTTGTATGAGGATATGATAAAGATGGGTTATCCACCTG 1054
Query 1379 ATGTTGTCATTTATGGTGTGCTTGTTGATGGCCTTTCTAAGCAAGGGCTCATGCTCCATG 1438
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 1055 ATGTTGTCATTTATGGTGTGCTTGTCGATGGCCTTTGTAAGCAAGGGCTCATGCTTCATG 1114
Query 1439 CTATGAGATTCTCTGTTAAGA-TGCTAGGCCAGTCGATCCGGCTCAATGTTGTAGTTTTT 1497
|| |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 1115 CTTTGAGATTCTCTGTTAAGACT-CTAGGCCAGTCGATCCGGCCCAATGTTGTAGTTTTT 1173
Query 1498 AATTCCTTAATAGATGGCTGGTGTAGGTTAAATCGTTTTGACGAGGCTTTGAAGGTGTTT 1557
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1174 AATTCCTTAATAGATGGCTGGTGTAGATTAAACCGTTGTGACGAGGCTTTGAAGGTGTTT 1233
Query 1558 AGATTAATGGGGATATATGGTATAAAACCTGATGTAGCCACA-TTCACCACGGTTATGAG 1616
|||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 1234 AGATTAATGGGGATATATGGTATAAAACCTGATGTAGCCACAATT-ACCACGCTTATGAG 1292
Query 1617 GGTGAGTATCATGGAAGGTAGATTAGAAGAAGCATTATTTCTGTTTTTCCGGATGTTCAA 1676
||||| | ||||||||||||||||| |||| | ||||||||| |||||||||||||||||
Sbjct 1293 GGTGACTGTCATGGAAGGTAGATTAAAAGAGGGATTATTTCTATTTTTCCGGATGTTCAA 1352
Query 1677 AATGGGTTTGGAACCTGATGCCT-TAGCATACTGTACCCTAATAGATGCATTCTGCAAGC 1735
||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||||
Sbjct 1353 AATGGGTTTGGAACCTGATGC-TGTAGCATTCTGTACCCTAATGGATGCATTCTGCAAGA 1411
Query 1736 ATATGAAGCCAACCATTGGGCTTCAGCTGTTTGATCTTATGCAGAGGAATAAAATCTC-T 1794
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1412 ATATGAAGCCAACCATTGGGCTTCAGCTTTTTGATCTTATGCAGAGGAATAAAAT-TCCT 1470
Query 1795 GCAGATATTGCGGTATGTAATGTCGTCATTCATTTGCTTTTCAAATGTCACCGCATAGAG 1854
|| || || || ||||||||||| || ||| |||||||||||||| | || || | ||
Sbjct 1471 GCGGACATCGCAGTATGTAATGTTGTTATTAATTTGCTTTTCAAAGGACAAAGCGTGGAT 1530
Query 1855 GATGCTTCTAAGTTCTTCAATAATCTTATTGAAGGAAAGATGGAGCCTGATATTGTGACA 1914
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1531 GAGGCTTCTAAGTTCTTCAATAATCTTCTTGAAGGAAAGATGGAGCCTGATATTGTGACA 1590
Query 1915 TATAACACAATGATATGTGGCTACTGCTCTTTGAGAAGGTTAGATGAAGCAGAGAGGATT 1974
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1591 TATAACACAATGATATGCGGCTACTGCTCTTTGAGAAGGTTAGATGAAGCAGCGAGGATT 1650
Query 1975 TTCGAGCTGCTAAAAGTTACACCTTTTGGTCCCAATACCGTTACTTTGACTATACTTATC 2034
|||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1651 TTCGAGATGCTAAAATTTACACCTTTTGGACCCAACGCCGTTACTTTGACTATACTTATC 1710
Query 2035 CATGTACTCTGCAAAAATAATGATATGGATGGTGCTATAAGGAT 2078
|| |||||| ||||||| |||||||||||||||| |||||||
Sbjct 1711 CACACACTCTGTAAAAATAGTGATATGGATGGTGCTCTAAGGAT 1754
Score = 501 bits (271), Expect = 1e-140
Identities = 301/316 (95%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 2208 TATTTCTCCAAGCATAGTAAGTTATAGCATCATAATTGACGGTCTTTGCAAACGAGGAAG 2267
||| |||||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct 1755 TATATCTCCAAGCATAATCAGCTATAGCATCATAATCGACGGTCTTTGCAAACGAGGAAG 1814
Query 2268 AGTGGATGAAGCAACAAATATCTTCCATCAGGCCATAGATGCAAAGTTATTGCCTGATGT 2327
||||||||||||||||||||| |||||||| ||||||||||||||| || | ||||||||
Sbjct 1815 AGTGGATGAAGCAACAAATATATTCCATCAAGCCATAGATGCAAAGATACTACCTGATGT 1874
Query 2328 TGTTGCCTACGCAATTCTTATCCGTGGTTATTGCAAGGTTGGAAGACTCGTTGAAGCTGC 2387
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1875 TGTTGCCTACGCAATTCTTATCCGTGGTTGTTGCAAGGTTGGAAGACTCGTTGAAGCTGC 1934
Query 2388 ATTGTTGTATGAACATATGTTAAGAAACGGAGTCAAACCAGATGATTTGCTTCAACGAGC 2447
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1935 ATTGTTGTATGAACATATGTTAAGAAACGGAGTCAAACCAGATGATTTGCTGCAACGAGC 1994
Query 2448 CCTTTCAGAATATAATCCCCCAAAGTGGTTGATGAGCAAAGGGGTCTGGGTACACGATAA 2507
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1995 CCTTTCAGAATATAATCCCCCAAAATGGTTGATGAGCAAAGGGGTCTGGGTACACGATAA 2054
Query 2508 ACCGATGCCTGATTAA 2523
||| || |||||||||
Sbjct 2055 ACCAATACCTGATTAA 2070
Score = 405 bits (219), Expect = 8e-112
Identities = 267/288 (93%), Gaps = 11/288 (4%)
Strand=Plus/Plus
Query 1 ATGTTACTTTTTTCTTCATCGTCTTTGCAATTACGCGAGATTTTCTTCCCGCGGATTTTC 60
||||| |||||||||||||||||||| ||||||||| ||| || ||||||| |||||||
Sbjct 1 ATGTTTCTTTTTTCTTCATCGTCTTTACAATTACGCAAGA--TT-TTCCCGCCGATTTTC 57
Query 61 TCTGTGTTCGTGAAGCTGAACTT-TCTGAACTCTCGTGGGTTTTCGTCTGATTCTGCTAA 119
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 58 TCTGTGTTCGTGAAGCTGAA-TTGCCTGAACTCTCGTGGGTTTTCGTCTGATTCTGCTAA 116
Query 120 AGCCCTCGCCGCCGGTATCTCTAAAGCAATCAAAGAAGGAAACTTTAACTTGTTAGATTC 179
| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 117 AACCCTCGCCGCCGGTGTCTCTAAAGCAATCAAAGAAGGAAACTTTAACTTATTAGA--- 173
Query 180 TTCTGTCTACGGTTCAAATTTGCAACGAAACGAGACGAATTTGGTCCTTCTTTCGCTTGA 239
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 174 TTCTGTCTACGGCTCAAATTTGCAACGAAACGAGACGAATCTGGTCCTTCTTTCGCTTGA 233
Query 240 ATCAGAACCCAATTCTGCGCTTA-AGTACTTTCGATGGGCAGAGATCT 286
||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 234 ATCAGAACCCAATTCTGCGCT-AGA-TACTTTCGATGGGCAGAGATCT 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95111341765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5