BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31850.1
Length=2324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473372 jgi|Araly1|473372|fgenesh2_kg.1__3326__AT1G31850.1 3356 0.0
> Ahg473372 jgi|Araly1|473372|fgenesh2_kg.1__3326__AT1G31850.1
Length=2329
Score = 3356 bits (1817), Expect = 0.0
Identities = 2176/2345 (93%), Gaps = 42/2345 (2%)
Strand=Plus/Plus
Query 1 TATTTATATCTCTAAAGCC-TT-TCTA--TATCTCTCTGTT---TA-AGTATCACTTCCT 52
|||||||||||||||| || || |||| | |||||||||| | ||||||||||| |
Sbjct 1 TATTTATATCTCTAAAACCTTTCTCTATCTCTCTCTCTGTTAGAAAGAGTATCACTTCTT 60
Query 53 GTCCCAAAACCAAAAGACTTGAGAGTGTGTCTTTAGA--GAGAGATCTTCTCTCTTTTAT 110
||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||||||
Sbjct 61 GTCCCAAAAACAAAAGACTTGAGTCTGTGTC-TTAGAGGGAGAGATCTTCTCTCTTTTAT 119
Query 111 CTTACGACTCTCACTTCTTATCTCAAATCTACTTCAACTC-TATTTCCAGTCTCCACATT 169
|||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 120 CTTAGGACTCTCACTTCTTATCTCAAATCTACTTCAACTCTTATCTCCAGTCTCCACATT 179
Query 170 TTCCCACAAATTTCAACTCTTGTTCTCTTCCTCCAAAGTAAAA---AACAAAACACTGCA 226
|||||| || ||||||||||||||||||| |||||||| |||| ||||| || ||
Sbjct 180 TTCCCAGAACTTTCAACTCTTGTTCTCTT-CTCCAAAG-AAAACTCTGCAAAA-TCTACA 236
Query 227 AGTGAGGTTTGG-----T-T-TTGGTGTTATAGAATTATGAAGAGCGGGAAGCAATCTTC 279
||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 237 GGTGAGGTTTGGTTACATATATTGGTGTTATAGAATTATGAAGAGCGGGAAGCAATCTTC 296
Query 280 GCAACCTGAAAAGGGTACTTCCAGGATCTTGTCACTGACTGTCCTGTTTATCGCATTTTG 339
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 297 ACAACCTGAAAAGGGTACTTCTAGGATCTTGTCACTGACGGTCCTGTTTATCGCATTTTG 356
Query 340 C-GGT-TTCTCCTTCTACCTCGGTGGTATATTTTGCTCTGAGAGAGACAAGATTGTAGCC 397
| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 357 CGGGTGTTCT--TTCTACCTCGGTGGTATATTTTGCTCTGAGAGAGACAAGATTGAAGCC 414
Query 398 AAGGATGTCACAAGGACGACTACAAAGGCTGTAGCTTCCCCTAAAGAACCTACAGCTACT 457
||||||||||| ||||||||||||||||| |||||||| ||||| ||||| || | ||||
Sbjct 415 AAGGATGTCACTAGGACGACTACAAAGGCAGTAGCTTCACCTAAGGAACCCACGGTTACT 474
Query 458 CCTATTCAAATCAAATCCGTTTCTTTCCCGGAGTGCGGGTCAGAGTTCCAAGATTACACC 517
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 475 CCTATTCAAATCAAATCCGTTTCTTTCCCGGAATGCGGGTCAGAGTTCCAAGATTACACC 534
Query 518 CCGTGCACCGATCCAAAGAGGTGGAAGAAGTATGGTGTCCATCGCTTAAGTTTCTTGGAG 577
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 535 CCGTGCACCGATCCAAAGAGGTGGAAGAAGTACGGTGTCCATCGCCTAAGTTTCTTGGAG 594
Query 578 CGTCATTGTCCTCCGGTATATGAAAAGAATGAGTGTTTGATTCCACCACCAGACGGGTAT 637
||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct 595 CGTCATTGTCCTCCGGTTTATGAAAAGAACGAGTGTTTAATTCCACCGCCAGATGGGTAT 654
Query 638 AAACCGCCTATAAGATGGCCCAAGAGCCGAGAACAGTGTTGGTACAGGAACGTGCCTTAT 697
||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 655 AAACCACCTATAAGATGGCCTAAGAGCCGAGAACAGTGTTGGTACAGAAACGTGCCTTAT 714
Query 698 GATTGGATCAATAAGCAAAAGTCTAACCAGCATTGGCTTAAGAAAGAAGGAGATAAGTTC 757
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct 715 GATTGGATCAATAAGCAAAAATCTAACCAGCATTGGCTTCAGAAAGAAGGAGACAAGTTC 774
Query 758 CATTTCCCTGGTGGTGGTACCATGTTCCCTCGTGGAGTTAGTCACTATGTTGATTTGATG 817
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 775 CATTTCCCTGGTGGTGGTACCATGTTTCCTCGTGGAGTTAGTCACTATGTTGATTTGATG 834
Query 818 CAAGATCTGATTCCTGAAATGAAAGACGGAACAGTCAGGACCGCCATTGATACTGGCTGT 877
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 835 CAAGATCTGATTCCCGAAATGAAAGATGGAACAGTCAGGACCGCCATTGATACCGGCTGT 894
Query 878 GGGGTTGCGAGCTGGGGAGGCGATCTTTTGGACCGTGGGATACTATCACTCTCTCTTGCT 937
|||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 895 GGGGTTGCAAGCTGGGGAGGCGATCTTTTGGACCGTGGGATTCTTTCACTTTCTCTTGCT 954
Query 938 CCAAGAGATAACCATGAAGCTCAGGTTCAATTTGCTCTTGAACGTGGAATTCCTGCGATT 997
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 955 CCAAGAGATAACCATGAAGCACAGGTTCAGTTCGCTCTTGAACGTGGAATTCCTGCGATT 1014
Query 998 CTCGGGATCATCTCTACGCAACGTCTCCCTTTTCCTTCAAATGCATTTGATATGGCTCAT 1057
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CTCGGAATTATCTCTACGCAACGTCTCCCTTTTCCTTCAAATGCATTTGATATGGCTCAT 1074
Query 1058 TGTTCAAGATGTCTTATTCCCTGGACAGAATTTGGTGGAATCTATTTACTTGAGATTCAC 1117
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 TGCTCAAGATGTCTTATTCCCTGGACAGAATTTGGTGGAATCTATTTGCTTGAGATTCAC 1134
Query 1118 CGTATAGTTCGACCTGGAGGTTTTTGGGTTCTTTCTGGTCCACCTGTGAACTATAATAGA 1177
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1135 CGTATAGTTCGACCTGGGGGTTTCTGGGTTCTTTCTGGTCCACCAGTGAACTATAATAGA 1194
Query 1178 CGATGGCGTGGATGGAACACAACCATGGAAGATCAGAAATCTGACTACAACAAGCTTCAG 1237
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1195 CGATGGCGCGGATGGAACACAACCATGGAAGATCAGAAATCGGACTACAACAAGCTTCAG 1254
Query 1238 TCACTTCTAACCTCCATGTGTTTCAAAAAGTACGCTCAAAAAGATGACATAGCCGTGTGG 1297
|||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1255 TCACTTTTAACCTCCATGTGTTTCAAAAAGTATGCTCAAAAAGACGACATAGCCGTGTGG 1314
Query 1298 CAGAAACTCTCAGACAAATCTTGCTATGACAAAATCGCTAAGAACATGGAAGCTTACCCT 1357
||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1315 CAGAAACTCTCTGACAAATCTTGCTACGACAAAATCGAAAAGAACATGGAAGCTTACCCT 1374
Query 1358 CCCAAATGTGACGACAGTATAGAACCTGATTCTGCTTGGTACACTCCACTCCGTCCTTGC 1417
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||
Sbjct 1375 CCCAAATGTGACGATAGTATAGAACCTGATTCCGCTTGGTACACTCCCCTCCGGCCCTGC 1434
Query 1418 GTGGTTGCCCCGACACCTAAAGTCAAGAAGTCTGGTCTCGGATCAATCCCAAAATGGCCC 1477
|||||||||| ||| |||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 1435 GTGGTTGCCCTGACTCCTAAAGTCAAGAAATCCGGTCTCGGGTCAATCCCGAAATGGCCT 1494
Query 1478 GAGAGGTTACATGTCGCGCCCGAGAGAATCGGTGATGTTCACGGAGGGAGTGCGAA-CAG 1536
|| |||||| |||| || ||||||||||| |||||||| |||||||| ||||| || | |
Sbjct 1495 GAAAGGTTAAATGTTGCACCCGAGAGAATTGGTGATGTGCACGGAGGTAGTGC-AAGCGG 1553
Query 1537 TTTGAAACACGATGATGGTAAATGGAAGAACAGAGTTAAGCATTACAAGAAAGTTTTACC 1596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 TTTGAAACACGATGACGGTAAATGGAAGAACAGAGTTAAGCATTACAAGAAAGTTTTACC 1613
Query 1597 AGCTCTTGGGACAGACAAGATAAGAAATGTTATGGATATGAACACTGTTTATGGAGGTTT 1656
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1614 AGCTCTTGGGACAGACAAGATAAGAAACGTTATGGATATGAACACGGTTTATGGAGGTTT 1673
Query 1657 CTCTGCGGCCCTCATTGAGGATCCCATTTGGGTCATGAACGTTGTATCATCGTACAGCGC 1716
| ||||| | ||||| | ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1674 CGCTGCGTCTCTCATCGCGGATCCCATTTGGGTCATGAATGTTGTCTCATCGTACAGCGC 1733
Query 1717 AAATTCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGGTGCGA 1776
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1734 AAATTCGCTTCCTGTTGTCTTTGATCGCGGTCTCATTGGGACTTACCACGACTGGTGCGA 1793
Query 1777 AGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGACAGTCTTTTTACCTT 1836
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1794 AGCTTTCTCGACGTATCCAAGAACTTATGATCTTCTTCACCTCGACAGCCTTTTTACCTT 1853
Query 1837 GGAGAGTCACAGGTGTGAGATGAAGTACATTTTGCTAGAGATGGACAGGATCTTGCGGCC 1896
||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||
Sbjct 1854 AGAGAGTCACAGGTGTGAGATGAAGTACGTTTTGCTAGAGATGGACCGGATTTTGCGACC 1913
Query 1897 GAGTGGATATGTTATAATCCGAGAATCGAGTTATTTCATGGACGCAATCACAACGTTAGC 1956
|||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1914 AAGTGGATATGTTATAATCCGAGAATCGAGTTATTTCATGGACGCGATCACAACATTGGC 1973
Query 1957 GAAAGGGATAAGGTGGAGTTGCCGGAGAGAGGAGACTGAGTATGCAGTCAAAAGTGAGAA 2016
||||||||| |||||||||||||| ||||||||||| ||||| || || ||||| |||||
Sbjct 1974 GAAAGGGATGAGGTGGAGTTGCCGAAGAGAGGAGACAGAGTACGCGGTTAAAAGCGAGAA 2033
Query 2017 GATTCTGGTTTGCCAGAAAAAGCTATGGTTTTCGTCAAACCAAACCTCTTGATGAGACCA 2076
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 2034 GATTCTGGTTTGCCAGAAGAAGCTATGGTTTTCATCTAACCAAACCTCTTGATGAGACCA 2093
Query 2077 CCTGTATCATAGTGTTTATCATCTCCTGTGATGCACACTACAGAGAGAAGGATCTAGTCC 2136
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2094 CCTGTATCATAGTGTTAATCATCTCCTGTGATGCACACTACAGAGAGAAGGATCTAGTCC 2153
Query 2137 TTTGAGTCCAAGATATAGCTCTATAAACAATCTCCtttttttGTTCTCTTTAATTTCTTG 2196
||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 2154 TTTGAATCCAAGATATAGCTCTATAAACAATCTCCTTTTTT-GTTCTCTTTGATTTCTTG 2212
Query 2197 GGTATTTCACGGtatagattgata-ttatatatttttt-aattatatttttaatatatag 2254
|| ||||||||||||||||| |||||| |||||| |||||||||| |||||||||
Sbjct 2213 GG-----CACGGTATAGATTGATACTTATATTTTTTTTTAATTATATTTA-AATATATAG 2266
Query 2255 atatattagtatgtggtttaaacactattattatCAAGGTCTTAAAGATTTGCTTTGCAA 2314
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct 2267 ATATATTAGTATGTGGTTTAAACACTATTATTATCAAGGTCT-AA-GATTTGCTTTACAA 2324
Query 2315 GAGTT 2319
|||||
Sbjct 2325 GAGTT 2329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87531383010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5