BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31860.1
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922256 jgi|Araly1|922256|scaffold_103537.1 1419 0.0
> Ahg922256 jgi|Araly1|922256|scaffold_103537.1
Length=890
Score = 1419 bits (768), Expect = 0.0
Identities = 843/880 (96%), Gaps = 2/880 (0%)
Strand=Plus/Plus
Query 55 TTTTCGTTTCTCGTAGCGTTAAAATGGCGGTATCGTACAATGCATTAGCTCAGTCTTTAG 114
|||||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTTTCGTTTCTCATTGCGTTAACATGGCGGTATCGTACAATGCATTAGCACAGTCTTTAG 60
Query 115 CGAGAAGTAGCTGCTTCATCCCCAAACCTTATTCCTTTAGAGATACTAAGCTGAGAAGCA 174
||||||||||||||||||||||||| |||||| | ||||||||||||||| ||||||||
Sbjct 61 CGAGAAGTAGCTGCTTCATCCCCAAGTCTTATTGCGTTAGAGATACTAAGCAGAGAAGCA 120
Query 175 GATCCAATGTCGTATTCGCGTGC-AATGATAATAAGAACATTGCTCTTCAAGCTAAGGTA 233
|||||||||||||||| |||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 121 GATCCAATGTCGTATTTGCGT-CTAATGATAATAACAACATTGCTCTTCAAGCTAAGGTA 179
Query 234 GATAACTTGTTGGACCGCATTAAATGGGATGACAAAGGATTAGCTGTGGCAATAGCACAA 293
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATAACTTATTGGACCGCATAAAATGGGATGACAAAGGATTAGCTGTGGCAATAGCACAA 239
Query 294 AACGTTGATACGGGAGCAGTATTGATGCAAGGCTTTGTTAATAGGGAGGCCCTCTCCACA 353
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 240 AACGTTGATACTGGAGCAGTATTAATGCAAGGCTTTGTTAATAGGGAGGCTCTCTCCACA 299
Query 354 ACCATCAGTTCTCGGAAAGCTACATTCTTTAGTCGATCAAGATCTACCTTATGGACTAAG 413
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 ACCATAAGTTCTCGGAAAGCTACATTCTTTAGTCGATCAAGATCAACCTTATGGACTAAA 359
Query 414 GGAGAGACATCCAATAACTTCATCAATATTCTTGATGTGTATGTTGATTGTGATCGTGAT 473
|||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||
Sbjct 360 GGAGAGACATCCAATAACTTCATCAATATTCTCGATGTGTATATTGATTGCGATCGTGAT 419
Query 474 TCGATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAGACTTGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGATTATTTACCTTGGAACACCTGATGGACCTACCTGTCACACAGGGGAAGAGACTTGT 479
Query 534 TACTACACATCGGTTTTTGATCAATTAAACAATGATGAGGCTTCAGGAAACAAGCTAGCA 593
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 480 TACTACACATCGGTTTTTGATCAATTAAACAATGATGAGCCTTCAGGAAATAAGCTAGCA 539
Query 594 TTAACAACATTGTACTCGCTAGAATCAATCATTTCCAAGCGGAAAGAAGAATCAACAGTT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTAACAACATTGTACTCGCTAGAATCAATCATTTCCAAGCGGAAAGAAGAATCAACAGTT 599
Query 654 CCTCAAGAAGGTAAACCATCATGGACTCGACGGTTGTTGACGGATGACGCTCTGCTTTGC 713
||||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||
Sbjct 600 CCTCAAGAAGGTAAACCGTCATGGACAAGACGGTTATTGACGGATGACGCTCTCCTTTGC 659
Query 714 TCAAAGATCAGGGAAGAAGCTGACGAGTTATGCAGAACACTGGAGGATAATGAGGAAGTT 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACAAAGATCAGGGAAGAAGCTGACGAGTTATGCAGAACACTGGAGGATAATGAGGAAGTT 719
Query 774 TCAAGAACACCATCAGAGATGGCTGATGTTTTATACCACGCAATGGTGCTTCTATCTAAA 833
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TCAAGAACACCATCGGAGATGGCTGATGTGTTATACCACGCAATGGTGCTTCTATCTAAA 779
Query 834 AGGGGTGTGAAGATGGAAGATGTTCTTGAAGTTCTTAGGAAACGCTTCTCTCAATCTGGA 893
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 AGGGGTGTGAAGATGGAAGATGTTCTTGAAGTTCTTAGAAAACGCTTCTCTCAATCTGGA 839
Query 894 ATCGAGGAGAAGCAAAACCGTACAAAGTAACCATTTTCTT 933
||||||||||||||||||||||||||||||| |||||||
Sbjct 840 ATCGAGGAGAAGCAAAACCGTACAAAGTAACTGTTTTCTT 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39647833680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5