BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31870.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912993 jgi|Araly1|912993|Al_scaffold_0001_3247 2477 0.0
> Ahg912993 jgi|Araly1|912993|Al_scaffold_0001_3247
Length=1683
Score = 2477 bits (1341), Expect = 0.0
Identities = 1583/1694 (93%), Gaps = 39/1694 (2%)
Strand=Plus/Plus
Query 165 CAGGAAACCAATCTTTAAAAGATTACTTGAAGAAGTATGAAAGTAGTGATGTTGTagaga 224
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 17 CAGGAAACAAATCTTTAAAAGATTACTTGAAGAAGTATGAAAGTAGTGATGTTGT--AGA 74
Query 225 agaagaagaagaagaagaagcagaagaagCCATCTAAACCTGAACCAAGAGGTGTTTTAG 284
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 75 A-AAGAAGAAGAAGAAGAAGCAGAAGAAGCCATCTAAACCTGAACCAAAAGGTGTTTTAG 133
Query 285 TTGTCGACGAAGATCCAGTTTGGCAAAAGCAGGTTGATCCTGAAGAGGACGAAAACGAAG 344
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 134 TTGTCGACGAAGATCCAGTTTGGCAAAAGCCGGTTGATCCTGAAGAGGACGAAAACGAAA 193
Query 345 ATGATTCAGCAGAGGAAACACCTCTGGTTGATGAAGACATTGAAGTTAAGCGAATGAGGA 404
|||||||||||||||||| ||| | ||||| ||||||||||| |||||| |||||||||
Sbjct 194 ATGATTCAGCAGAGGAAAGGCCTTTAGTTGACGAAGACATTGATGTTAAGAGAATGAGGA 253
Query 405 GGTTGGAGGAAATTAAGGCAAGGCGTGCTCATAATGCCATTGCTGAGGATGGAAGTGGGT 464
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 254 GGTTGGAGGAAATTAAGGCAAGGCGTGCACATAATGCCATTGCTGAGGATGGGAGTGGGT 313
Query 465 GGGTAACGTTACCTCTAAACCGTGAAGACACACAATCTAATATTTCTCCTCCACGTAGAC 524
|||| |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 314 GGGTGACGTTACCTCCAAACCGTGAGGACACACAATCTGATATTTCTCCTCCACGTAGAC 373
Query 525 AAAGGACTCGTAATGACTCGCCCTCTCCTGAGCCTGGGCCTAGACGGTCGGTTGCGGATA 584
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 374 AAAGAACTCGTAATGACTCGCCCTCTCCTGAGCCTGGGCCTAGACGTTCGGTTGCGGACA 433
Query 585 GAGTTGATACAGATATGTCACCACCACGACGGAGAAAACGTCACAATTCGCCTTCACCTG 644
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 434 GAGTTGAAACAGATATGTCACCACCACGTCGGAGGAAACGTCACAATTCGCCTTCACCTG 493
Query 645 AACCTAACAGAAAACATACCAAGCCTGTTAGTTTGGATTCAGATATGTCACCACCTCGCA 704
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 494 AACCTAACAGAAAACATACAAAGCCTGTTAGTTTGGATTCTGATATGTCACCACCTCGCA 553
Query 705 AAAGAAAAGCCAGGAATGATTCGCCTTCACCAGAACCTGAAGCTAAA-T--------ATC 755
||||||||||||||||||| |||||||||||||| |||||||||||| | |||
Sbjct 554 AAAGAAAAGCCAGGAATGACTCGCCTTCACCAGAGCCTGAAGCTAAAGTCCCCAAAAATC 613
Query 756 TGAGTGAAGATCTATCTCCTCCTCGTAGGAGACATGTTCATTCTCCATCGCGTGAATCTA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TGAGTGAAGATCTATCTCCTCCTCGTAGGAGACATGTTCATTCTCCATCGCGTGAATCTA 673
Query 816 GCAGAAAGCGTTCAGATTCTGTTGAGTTGGACGATGATTTATCTCCGCCTCGCAGGAAAA 875
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 674 GCAGAAAGCGTTCAGATTCTGTTGAGTTAGACGATGATTTATCTCCGCCTCGCAGGAAAA 733
Query 876 GAGATTTACATGGTTCACCTGTCTCAGATGTAAAAAAGAAGAGCAATGATCTATCTCCTC 935
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 734 GAGATTTACATGGTTCACCTGTCTCAGATGTAAAAAAGAAGAGTAATGATCTTTCTCCTC 793
Query 936 CACGGAGAAGAAGATATCATTCTCCATCACCTGAACCAGCTAGAAGGTCTTCAAAA-TCT 994
||||||||||| ||||||||||||||||||| ||||| | ||||||| |||||||| ||
Sbjct 794 CACGGAGAAGACGATATCATTCTCCATCACCCGAACCGGGTAGAAGGCCTTCAAAATTC- 852
Query 995 TTTGGCTCGAATGCTGATTTATCTCCACCCGGCCGGAATATAAATATGAAGGATTCTCAA 1054
||| ||| ||||||||||||||||||||| || ||||||| |||||||||| ||||| |
Sbjct 853 ATTGCCTCAAATGCTGATTTATCTCCACCCCGCAGGAATATGAATATGAAGGGTTCTCGA 912
Query 1055 GACTCAGATCTTTCGCCTCAAAGAAAAGCCGCAGATTTGCGACGTTCTTCTGAAAATGTG 1114
|||||||||||||| |||||||| ||| | | |||| | || || | | ||
Sbjct 913 GACTCAGATCTTTCTCCTCAAAG-AAA-----A-A-CTGCG--GATCCTC-G---ACGT- 957
Query 1115 TCCAGGAGTTCCAATTTTGATAGCTCTCCCCCAAGGAGACCACGCAGAGATTCATCACCT 1174
| | ||||||| ||||||||||||| |||||||||||||||||||| ||| || |
Sbjct 958 T-C-----TTCCAATATTGATAGCTCTCCTCCAAGGAGACCACGCAGAGAATCACCAATT 1011
Query 1175 CCTCAAATAAGCAAGGAGCAACGAAAGACCGGATTGATTAGTGGCAAAGACATTGGAAGT 1234
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1012 CCTCAAACAAGCAAGGAGCAACGAAAGACCGGTTTGATTAGTGGCAAAGACATTGGAAGT 1071
Query 1235 GAATATCGAAAGAAAAAGGAGGATGAAAAATTGAGGTTTAAAAATATGGATTCCGAGCTA 1294
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1072 GAATATCGAAAGAAAAAGGAGGATGAACAATTGAGGTTTAAAAATATGGATTCCGAGCTA 1131
Query 1295 ACTGGTCAAAACGCAGAAGCAGTGTTCCGTGACAAGATCACAGGGAAGCGTATATCAAAG 1354
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1132 ACTGGTCAAAATGCAGAAGCAGTATTTCGTGACAAGATCACAGGGAAGCGTATATCAAAG 1191
Query 1355 GAGGAATATCTTAAATCGAAGCaaaaaaaaGTGATAGAGAAGCCAAAGGAGATAAAACTG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAGGAATATCTTAAATCGAAGCAAAAAAAAGTGATAGAGAAGCCAAAGGAGATAAAACTG 1251
Query 1415 GAATGGGGCAAAGGTTTAGCTCAGAAGCGTGAAGCTGAAGCTAGACTACAAGAACTTGAG 1474
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1252 GAATGGGGCAAAGGTTTAGCTCAGAAGCGTGAAGCTGAAGCTAGACTACAGGAACTCGAG 1311
Query 1475 CTTGAGAAGGATAAGCCATTTGCTCGGACAAGGGATGATCCGGAGCTTGATCAAATGATG 1534
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1312 CTTGAGAAGGAGAAGCCATTTGCTCGGACAAGGGATGATCCGGAACTTGATCAAATGTTG 1371
Query 1535 AAGGAAAGAGTTAGATTTGGAGATCCAATGGCTCATTTGGTCAAGAAAA-GAAAGTACGA 1593
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||
Sbjct 1372 AAGGAAAGAGTTAGATTTGGAGATCCAATGGCTCATTTGGTTAAGAAAAAGAA-GCACGA 1430
Query 1594 GACAACTCTTGTGGATCTAGGAGACGATGAGGAGATGAAAAAATCTGGGTTCATTATACC 1653
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1431 GACAACTCTTGTGGATCTAGGAGACGACGAGGAGATGAAAAAATCTGGGTTCATTATACC 1490
Query 1654 ACAAAGTGTGCCTAAACATAGTTGGTTGACGAGACGGTTGGAAGCTGCATCAAACCGGTA 1713
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 1491 ACAAAGTGTGCCTAAACATAGTTGGTTGACGAGAGGGTTGGAAGCTGCAACAAACCGTTA 1550
Query 1714 TGGGATTAAACCGGGTAGACACTGGGATGGGGTCGACCGTAGTAACGGAACTGAGAAGGA 1773
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1551 TGGGATTAAACCGGGTAGACACTGGGATGGGGTCGACCGTAGTAACGGAACTGAGAAGCA 1610
Query 1774 -TCTGATTAAGAAGACCAATGAGAGGAAAGCAACGGAAATAGAGGCTTATCTCTGGTCCG 1832
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 AT-TGATTAAGAAGACCAATGAGAGGAAAGCAACGGAAATAGAGGCTTATCTCTGGTCCG 1669
Query 1833 TTGCAGACATGTGA 1846
||||||||||||||
Sbjct 1670 TTGCAGACATGTGA 1683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5