BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31880.1
Length=1574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473376 jgi|Araly1|473376|fgenesh2_kg.1__3330__AT1G31880.1 2167 0.0
> Ahg473376 jgi|Araly1|473376|fgenesh2_kg.1__3330__AT1G31880.1
Length=1512
Score = 2167 bits (1173), Expect = 0.0
Identities = 1396/1496 (93%), Gaps = 45/1496 (3%)
Strand=Plus/Plus
Query 26 TTTCAGTTCTCGGGTCACCCAATAACCCGACTTCTCGACCCGGTTTCGTCTCTGTTCTCA 85
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TTTTAGTTCTCGGGTCACCCAATAACCCGAATTCTCGACCCGGTTTCGTCTCTGTTCTCA 60
Query 86 TTTTTTCCAAATTTCTCTTCCGGAAAATGAAGATTTCTATGGGTTTTTGAGTTTGGAGAT 145
|||||| |||| | || | || | |||||||||| |||||||||
Sbjct 61 TTTTTT-CAAA----T-TT-C---------AG------A-GGGTTTTTGATTTTGGAGAT 97
Query 146 TTTCTCAGTGAAGTTTATTACATAATCAGATTCGAAGAAGAAGACATTTCAGCCATTGAT 205
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 98 TTTCTCAGTGAAGTTTATTACAGAACCAGATTCGAAGAAGAAGACATTTCAGCCATTGAT 157
Query 206 GGTCTATTTATAGACGTAGACTCAGAACTAACCCCACTCGTGCCGGCTTCCTAAATAGAC 265
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 GGTCTATTTATAGACTTAGACTCAGAACTAACCCCACTCGTGCCGGCTTCCTAAATAGAC 217
Query 266 CAAAGCCTTCAAGAGGAAAATAAAGCAGAAGCTAGCTA--TC-TAGTATCTCAATAATCT 322
|||| || |||||||| ||||||||||||||||| ||| || || |||||||| |||||
Sbjct 218 CAAAACCCTCAAGAGG-AAATAAAGCAGAAGCTA-CTATCTCTTA-TATCTCAAAAATCT 274
Query 323 CAGATCATA-TCGCTTCATTTCTCAGATATCGAAACACAAAGGTCTGAAAAGGCAGAG-- 379
|| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CAAATCA-AGTCGCTTCATTTCTCAGATATCGAAACACAAAGGTCTGAAAAGGCAGAGAA 333
Query 380 -AACAACTC--AAAAAAGAGACCAAAAATGTTTTCTTGCATAGCTTGTACCAAAGCAGAC 436
|||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 334 CAACAACACAAAAAAAAGAGACCAAAGATGTTTTCTTGCATAGCTTGTACCAAAGCAGAC 393
Query 437 GGAGGTGAAGAAGTCGAACATGGAGCGCGTGGAGGCACCACTCCCAATACTAAAGAAGCC 496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 394 GGAGGTGAAGAAGTCGAAAATGGAGCGCGTGGAGGCACCACTCCCAATACTAAAGAAGCC 453
Query 497 GTCAAAAGCCTAACCATTCAGATTAAAGATATGGCTTTGAAATTCTCTGGTGCTTATAAA 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GTCAAAAGCCTAACCATTCAGATTAAAGATATGGCTTTGAAATTCTCTGGTGCTTATAAA 513
Query 557 CAATGCAAGCCATGCACTGGTTCCTCTAGTAGTCCCTTGAAGAAAGGACATAGATCATTT 616
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 514 CAATGCAAGCCATGCACTGGTTCTTCTAGTAGTCCCTTGAAGAAAGGACATAGACCGTTC 573
Query 617 CCGGATTATGACAATGCCTCTGAAGGTGTTCCATACCCTTTCATGGGTGGAAGTGCTGGT 676
||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||
Sbjct 574 CCGGATTATGACAATGCTTCTGAAGGTGTTCCATACCCTTACATGGGTGGAAGTGCGGGT 633
Query 677 TCAACTCCTGCTTGGGACTTCACAAACTCCTCTCATCATCCAGCTGGACGGTTAGAATCA 736
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 634 TCAACTCCTGCTTGGGACTTCACAAATTCCTCTCACCATCCAGCTGGACGGTTAGAATCA 693
Query 737 AAGTTCACTTCAATATATGGAAATGATCGAGAATCTATCTCTGCACAGTCTTGTGATGTT 796
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 AAGTTCACCTCAATATATGGAAATGATCGAGAATCTATCTCTGCACAGTCTTGTGATGTG 753
Query 797 GTACTGGATGATGATG-GACCAAAAGAGTGGATGGCTCAAGTAGAACCTGGTGTTCATAT 855
|||||||||||||| | | ||||||||||||||||||||||||||||| |||||||||||
Sbjct 754 GTACTGGATGATGAAGTG-CCAAAAGAGTGGATGGCTCAAGTAGAACCCGGTGTTCATAT 812
Query 856 CACATTTGCTTCTCTTCCCACTGGAGGAAATGATCTCAAACGGATCCGTTTCAGCCGAGA 915
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 813 CACATTCGCTTCGCTTCCCACTGGAGGAAATGATCTCAAACGGATCCGCTTCAGCCGGGA 872
Query 916 GATGTTTGATAAGTGGCAAGCTCAACGGTGGTGGGGTGAGAACTATGACAAGATCGTTGA 975
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GATGTTCGATAAGTGGCAAGCTCAACGGTGGTGGGGTGAGAACTATGACAAGATCGTTGA 932
Query 976 GCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGA 1035
||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||| ||
Sbjct 933 GCTTTACAATGTACAGAGATTTAACCGCCAAGCCCTTCAAACACCTGCACGATCCGAAGA 992
Query 1036 TCAGTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTG 1095
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 993 TCAGTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCGAGAGAAAGCAAAGACTG 1052
Query 1096 GACTCCAAGACACAAT---TTCAGACCTCCAGGATCTGTCCCGCATCACTTTTATGGCGG 1152
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1053 GACTCCAAGACACAACAACTTCAGACCTCCAGGAAGTGTCCCGCATCACTTTTATGGCGG 1112
Query 1153 CTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCGATGGATGCAGCAAGAAC 1212
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1113 CTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCAATGGATGCAGCACGAAC 1172
Query 1213 CACAACTTCTTCCAGAGATGATCCACCTTCCATGAGCAATGCTAGTGAAATGCAAGCTGA 1272
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1173 CACCACTTCTTCCAGAGATGATCCACCCTCCATGAGCAATGCTAGTGAAATGCAAGCTGA 1232
Query 1273 GTGGATTGAAGAGGACGAGCCTGGTGTTTACATTACCATCAGACAATTATCAGATGGGAC 1332
|||||| ||||| |||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 1233 GTGGATCGAAGAAGACGAGCCCGGTGTTTACATTACCATCAGACAATTAGCTGATGGGAC 1292
Query 1333 TAGAGAGCTACGTCGAGTCAGATTCAGCCGGGAACGGTTTGGGGAAGTGCATGCAAAGAC 1392
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1293 TAGAGAGCTACGTCGAGTCAGATTCAGCCGGGAAAGATTTGGGGAAGTGCATGCAAAGAC 1352
Query 1393 ATGGTGGGAGCAGAACAGAGAGAGAATACAAACACAGTACCTCTAA--GCAAACGAAATA 1450
|||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |
Sbjct 1353 ATGGTGGGAGCAGAACAGAGAGAGAATACAAACACAGTACCTCTAAAAGAAAATGAAACA 1412
Query 1451 TTATGAGTACCAAAATCTTTAATTAATTAATTAATCTCCTTCACATAACAACACAA 1506
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1413 TTATGAGT-CCAAA-TCTTTAATTAATTAATTAATCTCATTCACATAACAACACAA 1466
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 1529 TTTTGTTCATCTTAGCTTAACATCTATACATAAATTAAGTGTTTTG 1574
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1467 TTTTGTTCATCTTAGCTTAACATCTATACATAAATCAAGTGTTTTG 1512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58963699260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5