BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31885.1
Length=972
Score E
Sequences producing significant alignments: (Bits) Value
Ahg912995 jgi|Araly1|912995|Al_scaffold_0001_3249 1186 0.0
> Ahg912995 jgi|Araly1|912995|Al_scaffold_0001_3249
Length=810
Score = 1186 bits (642), Expect = 0.0
Identities = 756/812 (93%), Gaps = 4/812 (0%)
Strand=Plus/Plus
Query 163 ATGATATTTGCCGGTTGCTCAGCCATCGTGGTAAATGAGACGTATGGCAAACCGGTGACA 222
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGATATTTGCCGGCTGCTCAGCCATCGTGGTAAATGAGACGTACGGCAAACCGGTGACA 60
Query 223 CTTCCCGGTATAGCTTTGGTATGGGGACTAGTCGTAACGGTTATGATCTACTCAATTGGT 282
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 61 CTTCCCGGTATAGCTTTGGTATGGGGACTAACCGTAACGGTTATGATCTACTCAATCGGT 120
Query 283 CATGTCTCTGGTGCACATTTCAACCCTGCTGTTTCTATTGCCTTTGCCTCTTCTAAGAAG 342
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 121 CATGTCTCCGGTGCACATTTCAACCCTGCTGTTTCCATTGCCTTTGCATCTTCTAAAAAG 180
Query 343 TTCCCTTTTAATCAGGTTCCGGGGTACATTGCCGCTCAACTTCTCGGATCGACCTTAGCG 402
|||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||
Sbjct 181 TTCCCTTTTAATCAGGTTCCAGGGTATATAGCCGCTCAAGTTCTCGGATCGACCTTAGCT 240
Query 403 GCTGCAG-TTCTACGGCTTGTGTTCCATCTAG-ACGACGATGTTTGTAGCCTCAAAGGCG 460
||||||| || |||||||| |||| ||||| | | || ||||||||||||||||||||||
Sbjct 241 GCTGCAGCTT-TACGGCTTTTGTTTCATCT-GAATGATGATGTTTGTAGCCTCAAAGGCG 298
Query 461 ATGTTTATGTGGGAACATATCCGTCAAACTCAAATACGACCTCGTTCGTAATGGAGTTCA 520
||||||| || ||||||||||| |||||||||| ||||| || || |||||||||||||
Sbjct 299 ATGTTTACGTTGGAACATATCCATCAAACTCAACCACGACGTCATTTGTAATGGAGTTCA 358
Query 521 TCGCTACTTTCAATCTAATGTTTGTTATATCTGCTGTCGCAACCGATAAACGGGCCACCG 580
| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct 359 TTGCTACTTTCAATCTAATGTTCGTTATATCTGCTGTCGCTACCGATAAACGAGCCACGG 418
Query 581 GGTCATTCGCTGGAATCGCTATTGGCGCAACCATAGTACTCGACATCCTTTTCTCCGGGC 640
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 419 GGTCACTCGCTGGAATCGCTATTGGCGCAACCGTAGTACTCGACATCCTTTTCTCCGGGC 478
Query 641 CAATTTCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGAT 700
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAATATCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGAT 538
Query 701 GTTATAAGGATTTATGGTTATACATAGTTTCACCCGTGATCGGGGCATTATCAGGTGCAT 760
|||||||||| ||||||||||||||| ||||||| ||| |||| ||||||||||||||||
Sbjct 539 GTTATAAGGACTTATGGTTATACATAATTTCACCGGTGCTCGGAGCATTATCAGGTGCAT 598
Query 761 GGACTTATGGTTTGTTACGATCGACAAAGAAATCATATAGTGAGATTATTCGTCCAAATT 820
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 599 GGACTTACAATTTGTTACGATCCACAAAGAAATCATATAGTGAGATTATTCGTCCAAATT 658
Query 821 GCAATAAAGTATCTTCGAGAGATCGCCAAGAAGCTTCCCAAGATGAGATTTGTGTTCTAC 880
|||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 659 GCAATAAAATTTCTTCGAGAGATCGCCAAGAAGCTTCTAAAGATGAGATTTGTGTTTTAC 718
Query 881 GAGTGGTTGATCCGGCTAATCAAAACTATTTTATATGTTCATCACCTACTGATATCAATG 940
||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 719 GAGTGGTTGATCCAGCTAACCAAAACTATTTTATATGTTCATCACCTAATGATATCAATG 778
Query 941 GCAAATGTAATGTTACATGTAAGTTGGCGTGA 972
| ||||||||||||||||||||||||||||||
Sbjct 779 GTAAATGTAATGTTACATGTAAGTTGGCGTGA 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36102402399
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5