BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31910.1
Length=2345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473379 jgi|Araly1|473379|fgenesh2_kg.1__3333__AT1G31910.1 2900 0.0
> Ahg473379 jgi|Araly1|473379|fgenesh2_kg.1__3333__AT1G31910.1
Length=1800
Score = 2900 bits (1570), Expect = 0.0
Identities = 1736/1814 (96%), Gaps = 19/1814 (1%)
Strand=Plus/Plus
Query 534 CCGCCGGTCATTTACTGCCGCCGATTTCAAA-TTATCCGATCATTTCCGGCGATATCCAA 592
|||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 CCGCCGGTCATTCACTGCCGCCGATTTCAAACTT-CCCGATCATTTCCGGCGATATCCAA 59
Query 593 TCGCAGACTGAGGTGAATCTGGGGTTTTGATCAGCGATTATCTTTGTCACTCTTTGAAAA 652
|||||| | ||||||||||| ||| ||||||||||||||||| | || | |||
Sbjct 60 TCGCAGTCAGAGGTGAATCT-GGGCTTTGATCAGCGATTATC----T---TC---GGAAA 108
Query 653 TGGCTGTTGTTGCTTCTGCTCCTGGGAAAGTTTTGATGACTGGAGGCTACCTTGTACTCG 712
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 109 TGGCTGTTGTTGCTTCTGCTCCTGGGAAGGTTTTGATGACTGGAGGCTACCTTGTACTCG 168
Query 713 AGAAGCCAAATGCAGGGCTTGTGTTGAGTACAAATGCACGGTTTTACGCGATTGTGAAGC 772
| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 169 ATAAGCCAAATGCGGGGCTTGTGTTGAGTACAAATGCACGGTTCTACGCGATTGTGAAGC 228
Query 773 CAATCAACGAAGAAGTCAAGCCTGAAAGTTGGGCATGGAAATGGACAGATGTCAAATTAA 832
| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 229 CGATCAATGAAGAAGTCAAGCCTGAAAGTTGGGCATGGCAATGGACAGATGTCAAATTAA 288
Query 833 CATCACCACAGCTCTCGAGAGAAAGCATGTATAAACTGTCACTGAATCATTTGACTCTTC 892
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 289 CATCACCACAGCTCTCGAGAGAAAGCATGTATAAACTGTCACTGAAACATTTGACTCTTC 348
Query 893 AGTCTGTGTCTGCAAGTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTA 952
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 349 AGTCTGTGTCTGCAAGTGATTCAAGAAACCCCTTTGTAGAGCATGCAATACAGTATGCTA 408
Query 953 TAGCTGCTGCTCATTTGGCAACCGAGAAGGACAAAGAATCATTGCACAAACTCTTATTGC 1012
|||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||||
Sbjct 409 TAGCTGCTGCTCATTTGGCAACTGACAAGGACAAAGAAGCATTGCACAAACTCTTCTTGC 468
Query 1013 AAGGTCTTGATATAACAATATTAGGCTCCAATGACTTTTACTCATATCGGAACCAGATAG 1072
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AAGGTCTTGATATCACAATATTAGGCTCCAATGACTTTTACTCATATCGGAACCAGATAG 528
Query 1073 AATCGGC-TGGGCTTCCATTGACACCAGAATCGCTGGGTACCCTTGCACCGTTTGCATCA 1131
|||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 529 AATC-GCTTGGGCTTCCATTGACACCAGAATCGCTGGGTACCCTTGCACCTTTTGCATCA 587
Query 1132 ATCACATTCAATGCTGCGGAGTCAAATGGTGCTAATTCCAAGCCTGAAGTAGCAAAAACT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 ATCACATTCAATGCTGCGGAGTCAAATGGTGCTAATTCCAAGCCTGAAGTAGCAAAAACT 647
Query 1192 GGCTTAGGTTCTTCTGCAGCAATGACAACAGCTGTGGTTGCAGCTCTGTTACATTATCTT 1251
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 648 GGCTTAGGTTCTTCTGCAGCAATGACAACAGCTGTGGTTGCAGCTCTCTTACATTATCTT 707
Query 1252 GGAGTGGTTGACCTATCTGATCCATGTAAAGAAGGAAAGTTTGGCTGTTCTGATCTAGAT 1311
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 708 GGAGTTGTTGACCTATCTGATCCATGTAAAGAAGGAAATTTTGGTTGTTCTGATCTAGAT 767
Query 1312 GTTATCCATATGATAGCACAAACGTCTCATTGTCTTGCACAAGGGAAGGTCGGAAGTGGG 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GTTATCCATATGATAGCACAAACGTCTCATTGTCTTGCACAAGGGAAGGTCGGAAGTGGG 827
Query 1372 TTTGATGTCAGCTGTGCTGTCTATGGAAGTCAGCGTTATGTTCGCTTCTCTCCAGAAGTC 1431
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 828 TTCGATGTCAGCTGTGCTGTCTATGGGAGTCAGCGTTATGTTCGCTTCTCTCCAGAAGTC 887
Query 1432 TTGTCATTTGCTCAGGTTGCAGTAACAGGTCTGCCATTAAATGAAGTTATTGGTACAATT 1491
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 888 TTGTCATTTGCTCAGGTTGCAGTAACAGGTCTGCCGTTAACTGAAGTTATTGGTACAATT 947
Query 1492 TTGAAGGGAAAATGGGACAATAAGAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT 1551
|||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 948 TTGAAGGGGAAATGGGACCATGACAGAACTGAGTTCTCTTTACCACCACTGATGAATCTT 1007
Query 1552 TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTGCAGTAAAG 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1008 TTCCTTGGAGAACCTGGAAGTGGTGGATCCTCCACACCATCAATGGTAGGTGCTGTAAAG 1067
Query 1612 AAGTGGCAAATGTCTGATCCAGAGAAGGCACGAGAAAACTGGCAGAATTTGTCAGATGCA 1671
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1068 AAGTGGCAAATGTCTGATCCAGAGAAGGCACGAGAAAATTGGCAGAAGTTGTCAGATGCA 1127
Query 1672 AATTTAGAACTGGAAACTAAGCTAAACGATCTGAGCAAATTAGCTAAAGACCACTGGGAT 1731
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1128 AATTTAGAACTGGAAACTAAGCTAAACGTTCTGAGCAAATTAGCTAAAGACCACTGGGAT 1187
Query 1732 GTTTATCTACGAGTCATTAAGTCTTGTAGTGTGCTTACTTCTGAAAAGTGGGTGTTACAT 1791
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1188 GTTTATCTAGGAGTCATTAAGTCTTGTAGTGTGCTTACTTCTGAAAAGTGGGTGCTACAT 1247
Query 1792 GCTACTGAACCAATCAACGAAGCCATTATTAAAGAACTCTTAGAGGCAAGAGAAGCTATG 1851
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 GCTACTGAACCAATCAATGAAGCCATTATTAAAGAACTCTTAGAGGCAAGAGAAGCTATG 1307
Query 1852 TTGAGGATCAGAATTCTTATGCGTCAGATGGGTGAGGCGGCTAGCGTTCCGATAGAGCCT 1911
||||||||||||||||||||||| ||||| |||||||| || || |||||||||||||||
Sbjct 1308 TTGAGGATCAGAATTCTTATGCGCCAGATCGGTGAGGCTGCCAGTGTTCCGATAGAGCCT 1367
Query 1912 GAATCTCAAACTCAACTTTTGGATTCTACAATGAGTGCTGAAGGAGTTCTACTTGCTGGT 1971
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1368 GAATCTCAAACTCAACTTTTGGATTCTACAATGAATGCTGAAGGAGTTCTACTTGCTGGT 1427
Query 1972 GTTCCTGGAGCTGGTGGATTTGATGCCATATTTGCAATCACTTTAGGGGATTCCGGCACC 2031
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1428 GTTCCTGGAGCTGGTGGATTTGATGCCATATTTGCAATCACTTTAGGTGATTCCGGCAGC 1487
Query 2032 AAACTGACCCAGGCATGGAGTTCGCACAATGTTTTGGCCTTGTTGGTGAGAGAAGATCCA 2091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 AAACTGACCCAGGCATGGAGTTCGCACAATGTTTTGGCCTTGTTGGTGAGAGAAGATCCA 1547
Query 2092 CATGGCGTTTGCCTAGAAAGTGGTGATCCACGAACCACATGTATTACTTCAGGCGTTTCA 2151
|| || |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1548 CACGGTGTTTGCCTAGAAAGTGGTGATCCACGCACCACAGGTATTACTTCAGGCGTTTCA 1607
Query 2152 TCAATTCACCTTGAGTAAACAACATTGTTT--CAGTGTCCAATTATTAGGTGCGTCACCA 2209
|||||||| ||||||||| ||||||||||| |||||||| |||||||||||| ||||||
Sbjct 1608 TCAATTCATCTTGAGTAAGCAACATTGTTTGGCAGTGTCCTATTATTAGGTGCATCACCA 1667
Query 2210 AGTTCGGTTGAGTATACTGTTTTGCATATAGACTTGGGTGCTAAATTTCTTGGTGTAAGC 2269
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1668 AGTTCGGATGAGTATACTGTTTTTCATATAGACTTGGGTGCTAAATTTCTTGGTGTAAGC 1727
Query 2270 ATTTTTAT-ACCCATTGTAAGGTCTTTAACTCTTGGAAAACTTGCGGGAAAATAAAATAA 2328
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1728 ATTTTT-TCACCCATTGTAAGGTCTTTAACTCTTGGAAAACTTGCGGGAAAATAAAATAA 1786
Query 2329 AGTTGATTTCAAAT 2342
||||||||| ||||
Sbjct 1787 AGTTGATTTAAAAT 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88331278155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5