BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31920.1
Length=1994
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473380 jgi|Araly1|473380|fgenesh2_kg.1__3334__AT1G31920.1 3014 0.0
> Ahg473380 jgi|Araly1|473380|fgenesh2_kg.1__3334__AT1G31920.1
Length=1948
Score = 3014 bits (1632), Expect = 0.0
Identities = 1803/1886 (96%), Gaps = 10/1886 (1%)
Strand=Plus/Plus
Query 115 ACATTTTCGGACACCAAAATCCCTAGTTTCTTAATGGTTATGAGGAGAGGATGATCAAGG 174
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 67 ACATTTTCGGACACC-AAATCCCTAGTTTCTTAATGGTTACGAGGAGAGGATGATCAAGG 125
Query 175 CA-C--CAATTCTACAGTCTCTATTGGCTTCTAGAGACGATTTAACTCATAACCCAGAAG 231
|| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 126 CACCAACAATTCTACAGTCTCTATTGGCTTCTAGAGACGATTTAACACATAACCCAGAAG 185
Query 232 TCAACAACTTTGGAGGGAAAGAGCAAGAATGTTTATACCTCTTGAAGAGATGCCACAACA 291
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 186 TCAACAACTGTGGAGGGAAAGAGCAAGAATGTTTATACCTCTTGAAGAGATGCAACAACA 245
Query 292 TAGACGAGTTCAAGCAAGTTCACGCCAGATTCATCAAGCTAAGTTTGTTCTATTCTTCTT 351
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 246 TTGACGAGTTCAAGCAAGTTCACGCCAGATTCATCAAGCTAAGTTTGTTCTGCTCTTCTT 305
Query 352 CATTCTCAGCCAGCAGCGTTCTCGCAAAATGCGCTCACTCG-GGATGGGAGAACAGTATG 410
|||||||||| ||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 306 CATTCTCAGCTAGCAGCGTTCTCGCAAAATGCACTCACTCGAGG-TGGGAGAACAGTATG 364
Query 411 AATTACGCAGCTTCCATATTCAGAGGCATAGATGATCCTTGTACCTTTGATTTCAATACA 470
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 365 AATTACGCAGCTTCGATATTCAGAGGCATTGATGATCCGTGTACCTTTGATTTCAATACA 424
Query 471 ATGATTAGAGGGTATGTTAACGTAATGAGTTTCGAGGAAGCATTGTGTTTTTACAATGAG 530
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 425 ATGATTAGAGGGTATGTTAATGAAATGAGTTTCGAGGTAGCATTGTGTTTTTACAATGAG 484
Query 531 ATGATGCAGAGAGGGAATGAGCCAGATAATTTCACGTACCCGTGTCTTCTCAAGGCTTGC 590
|||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 485 ATGATGGAGAGAGGGATTGAGTCAGATAATTTCACGTACCCGTGTCTTCTCAAGGCTTGC 544
Query 591 ACTCGTTTGAAGTCAATTCGAGAAGGGAAGCAGATTCATGGGCAAGTGTTTAAGCTCGGT 650
|||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 545 ACTCGTTTGAAGGCGATTCGAGAAGGGAAGCAGATTCATGGGCACGTGTTTAAGCTCGGT 604
Query 651 CTTGAAGCTGACGTGTTTGTTCAGAATAGTTTGATCAATATGTATGGAAGATGTGGAGAG 710
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CTTGAAGCGGATGTGTTTGTTCAGAATAGTTTGATCAATATGTATGGAAGATGTGGAGAG 664
Query 711 ATGGAACTTTCTTCTGCGGTTTTTGAGAAACTGGAATCTAAAACAGCTGCGTCGTGGAGC 770
||||||||||||||| | ||||||||||||||||||| |||| | |||||||||||||||
Sbjct 665 ATGGAACTTTCTTCTACAGTTTTTGAGAAACTGGAATTTAAATCTGCTGCGTCGTGGAGC 724
Query 771 TCGATGGTCTCTGCTCGTGCAGGCATGGGAATGTGGAGCGAATGCTTGTTACTATTCCGT 830
|| ||||| || ||| ||| |||||||||| ||||||||||||||||| | |||| |||
Sbjct 725 TCAATGGTTTCAGCTTGTGTAGGCATGGGATTGTGGAGCGAATGCTTGATGTTATTTCGT 784
Query 831 GGAATGTGTAGCGAAACGAATTTGAAGGCGGAAGAAAGTGGAATGGTTAGTGCTCTCTTA 890
| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||| |
Sbjct 785 GAAATGTGTAGAGAAACGAATTTGAAGGCTGAGGAAAGCGGAATGGTTAGTGCTCTCTCA 844
Query 891 GCTTGTGCCAACACCGGTGCACTCAATCTAGGAATGAGCATCCATGGCTTCCTGTTGAGA 950
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GCTTGTGCCAACACAGGTGCACTCAATCTAGGAATGAGCATCCATGGCTTCCTGTTGAGA 904
Query 951 AACATAAGCGAACTCAACATAATAGTCCAAACTTCACTAGTAGATATGTACGTTAAATGC 1010
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 905 AACATAAGCGAACTCAACATAATAGTCCAAACTTCACTTGTAGATATGTACGTTAAATGC 964
Query 1011 GGGTGCT-TAGACAAAGCGTTGCATATATTTCAGAAGATGGAAAAGAGGAATAATTTGAC 1069
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GGGTG-TATAGACAAAGCGTTGCATATATTTCAGAAGATGGAAAAGAGGAATAATTTGAC 1023
Query 1070 TTACAGTGCAATGATCTCAGGACTTGCGTTGCACGGAGAAGGAGAATCAGCTTTAAGAAT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TTACAGTGCAATGATCTCAGGACTTGCGTTGCACGGAGAAGGAGAATCAGCTTTAAGAAT 1083
Query 1130 GTTCTCTAAGATGATCAAAGAAGGTTTAGAACCAGATCATGTTGTGTATGTCAGTGTTCT 1189
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1084 GTTCTCTGAGATGATCAAAGAAGGCTTAGAACCAGATCATGTTGTGTATGTCAGTGTTCT 1143
Query 1190 CAATGCATGTAGTCACTCTGGTCTTGTTAAAGAAGGTCGTCGAGTCTTCGCAGAAATGTT 1249
|||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1144 CAATGCCTGTAGCCACTCTGGTCTTGTTAAAGAAGGTCGTCGAGTCTTCGAAGAAATGTT 1203
Query 1250 AAAGGAAGGTAAGGTGGAGCCAACGGCTGAGCATTACGGCTGTCTTGTAGATCTTCTGGG 1309
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1204 AAAGGAAGGTAAGGTGGAGCCAACGGCTGAGCATTATGGCTGTCTTGTAGATCTTCTGGG 1263
Query 1310 AAGAGCCGGATTGCTCGAGGAAGCATTGGAGACTATCCAAAGCAT-ACCAATTGAGAAAA 1368
||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||
Sbjct 1264 AAGAGCCGGATTGCTCGAGGAAGCATTGGAGACTATCCAAAGCATGTCC-ATTGAGCAAA 1322
Query 1369 ATGATGTTATCTGGAGAACCTTCTTAAGTCAATGCAGAGTTCGTCAGAACATTGAGCTAG 1428
|||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1323 ATGATGTTGTCTGGAGAAGCTTCTTAAGCCAATGCAGAGTTCATCAGAACATTGAGCTAG 1382
Query 1429 GCCAAATAGCAGCTCAAGAACTGCTTAAGCTAAGCTCACACAACCCAGGTGACTATTTGC 1488
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GTCAAATAGCAGCTCAAGAACTGCTTAAGCTAAGCTCACACAACCCAGGTGACTATTTGC 1442
Query 1489 TGATCTCTAACTTGTATTCACAAGGTCAAATGTGGGATGATGTAGCCAGAACTCGAACAG 1548
| ||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1443 TAATCTCTAACATGTATTCACAAGCTCAAATGTGGGATGATGTAGCCAGAGCTCGAACAG 1502
Query 1549 AAATCGCTATCAAGGGTTTGAAACAAACCCCGGGTTTTAGCATCGTCGAGCTAAAAGGTA 1608
|||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||
Sbjct 1503 AAATCGCTATCAAGGGTTTGAAGCAAACCCCGGGTTTTAGTATTGTCGAGGTAAAAGGTA 1562
Query 1609 AAACCCACAGGTTCGTTTCACAAGATCGATCGCACCCAAAATGCAAAGAAATCTACAAGA 1668
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1563 AAACCCACAGGTTTGTTTCACAAGATCGATCGCACCCACAATGCAAAGAAATCTACAAGA 1622
Query 1669 TGCTACACCAGATGGAATGGCAACTAAAATTCGAAGGATATTCACCAGACTTGACACAGA 1728
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1623 TGCTACACCAGATGGAATGGCAACTAAAGTTCGAAGGATATTCACCAGACTTGACACAGA 1682
Query 1729 TATTGCTAAACGTAGATGAAGAAGAAAAGAAAGAGAGATTAAAAGGACACAGCCAAAAGG 1788
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1683 TATTGCTAAACGTAGATGAAGAAGAAAAGAAAGAGAGACTAAAAGGACACAGCCAAAAGG 1742
Query 1789 TGGCTATTGCCTTTGGACTATTGTATACACCTCCAGGGTCTATCATTAAAATAGCTAGAA 1848
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 TGGCTATTGCCTTTGCACTATTGTATACACCTCCAGGGTCTATCATTAAAATAGCTAGAA 1802
Query 1849 ACCTGAGGATGTGTAGTGACTGTCACACATATACAAAGAAAATCTCCATGATCTACGAAA 1908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 ACCTGAGGATGTGTAGTGACTGTCACACATATACAAAGAAAATCTCCATGATCTACGAAA 1862
Query 1909 GAGAGATTGTTGTAAGAGACAGAAACAGGTTTCACCTGTTTAAAGGTGGAACTTGTTCTT 1968
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1863 GAGAGATTGTTGTAAGAGACAGAAATAGGTTTCACCTGTTTAAAGGTGGAACTTGTTCTT 1922
Query 1969 GTAAAGATTATTGGTAGGTTTAAATC 1994
||||||||||||||||||||||||||
Sbjct 1923 GTAAAGATTATTGGTAGGTTTAAATC 1948
Score = 93.5 bits (50), Expect = 6e-18
Identities = 54/56 (96%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 11 ACTTGTGGCTCATATTTTCCATGAAAATCTCGAGGGATGAGATTCAAAAACCCTCA 66
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ACTTGTGGCTCTTATTTTCCATGAAAATCTCGAGGGATGAGATTCAAAACCCCTCA 56
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74961602160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5