BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31930.1
Length=3067
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473382 jgi|Araly1|473382|fgenesh2_kg.1__3336__AT1G31930.1 4309 0.0
> Ahg473382 jgi|Araly1|473382|fgenesh2_kg.1__3336__AT1G31930.1
Length=2921
Score = 4309 bits (2333), Expect = 0.0
Identities = 2771/2972 (93%), Gaps = 72/2972 (2%)
Strand=Plus/Plus
Query 21 CTCAGAGAGATAAAACAAATATCACAGCTACCAAAACAGATTCCtcttacttcttcttct 80
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCAGAGAGAAAAAACAAATATCACAGCTACCAAAACAGATTCCTCTTACTTCTTCTTCT 60
Query 81 tct--tgttctgtgttcgtcttctCAGATTCAGCTTCGACtttttttttGTTTC-TCACT 137
||| | |||| ||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 61 TCTCCTCCTCTGAGTTCGTCTTCTCAGATTCAGCTTCGACTTTTTTGTTGTTTCTTCACT 120
Query 138 TTTATACAAAAGGTTTCAATGCTCTCTCGTGAAACGTCCATATATGCCGGCTATTTGACT 197
||||||||||||||||||| || | | | |||||||||||||||
Sbjct 121 TTTATACAAAAGGTTTCAA----------TG---C-T-C------GCCGGCTATTTGACT 159
Query 198 TTGATTTTTATTCATATGACAAAACTAAAGCCAATTTGAGGAAATGGTGATGTGA-TT-T 255
|||| ||||||| ||||| || ||||||||||||||||||||||||||||| || |
Sbjct 160 TTGA-TTTTATTGATATG-----AC-AAAGCCAATTTGAGGAAATGGTGATGTGATTTGT 212
Query 256 G------T-GGTTGCATCTTGTAATTTTCTCTATTGGTGGTGTGCTTCTTTTGA--TT-G 305
| | |||| |||||||||| || | ||||||||||| || |||||||| || |
Sbjct 213 GTTTTTTTGGGTTTCATCTTGTAA-ATTGT-TATTGGTGGTG-GC-TCTTTTGATTTTGG 268
Query 306 --TGTaaaaaaaCATGGAGAAGAAAGATGAAGGTGAAAGCTGGAAAGAAATGGTGAGAAA 363
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 ATTTTGTAAAAACATGGAGAAGAAAGATGAAGGTGAAAGCTGGAAAGAAATGGTGAGAAA 328
Query 364 GATGCTTCCTCCTGGAGCTCCTTTACCTGAAGATCCATCGGAATTTGATTACTCTATAGC 423
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 329 GATGCTTCCTCCTGGAGCTCCTTTACCGGAAGATCCATCGGAATTTGATTACTCCATTGC 388
Query 424 TTTAGAGTACACTGGTCCTCCTCCTGTTCATGATATCCCTAGAGTTTCACCTGTTGATGT 483
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 389 TTTAGAGTACACTGGTCCTCCTCCGGTTCATGATATCCCTAGAGTTTCACCTGTTGATGT 448
Query 484 TAATCCTCGTGTGAATAATCCGATACCATTACCGGTCTCTCGTATAGCGGGAGGAGTCAC 543
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 449 TAATCCTCGTGTGAACAATCCCATTCCATTACCGGTCTCTCGTATAGCGGGAGGAGTCAC 508
Query 544 AAGCTCTTCGGGAGGTTCGCCAGCTAGCTCTGAGTCTGTGGTCTCTGTGTTGCATAATAA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 AAGCTCTTCGGGAGGTTCGCCAGCTAGCTCTGAGTCTGTGGTCTCTGTGTTGCATAATAA 568
Query 604 CCCTGAATCATCATCTGGCTCAGCTTCTGTATCACCAGTTTCTGGTCATAGACAAAATGG 663
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 569 CCCTGAATCATCATCTGGCTCAGCTTCTGTATCACCAGTTTCTGGTCATAGGCAAAATGG 628
Query 664 GAATCAGGTTCGTAGACCGGTTGTGAAATTCAAACCTGTCGATGATCATGATCGAATTGA 723
||||||| |||| |||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 629 GAATCAGATTCGGAGACCGGTTGTGAAATTCAAACCTGTTGATGATCATGATAGGATTGA 688
Query 724 AGGTAGAGAAGCTGCAGAGGAGGAGGATAACAATGTGGAGGCAGAGACAGAGAGGGAGAG 783
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 689 AGGTAGAGAAGCTGCAGAGGAGGAG-A-A-CAATGTGGAGGCAGAGACAGAGAGGGAGAG 745
Query 784 GAAGGTTCATGAGTGTACTGCAAGTACGAAGAGACGGAAGAAGAAGAAGAAAAGTGAGTG 843
|||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || |||||
Sbjct 746 GAAGGTCCATGAGTGTACCGCAAGTACGAAGAGAAGGAAGAAGAATAAGAAGAGAGAGTG 805
Query 844 TTATCGATGCGGAAAAGCGAAATGGGAAAATAAGGAGACTTGCATTGTGTGTGATGAAAA 903
|| | |||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 806 TTCTAGATGTGGAAAAGCGAAATGGGAAAATAAGGAGACTTGTATTGTTTGTGATGAAAA 865
Query 904 GTATTGTGGAAACTGTGTGCTTAGAGCAATGGGTTCGATGCCTGAAGGAAGAAAGTGTGT 963
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 866 GTATTGTGGAAACTGTGTGCTTAGAGCGATGGGTTCGATGCCTGAAGGAAGAAAGTGTGT 925
Query 964 GAGTTGCATCGGTCAAGCTATTGACGAATCGAAACGGTCTAAATTAGGGAAGCATTCTCG 1023
|||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 926 GAGTTGTATTGGTCAAGCTATCGATGAATCGAAACGGTCTAAATTAGGGAAGCATTCGCG 985
Query 1024 GGTATTGTCGCGGTTGCTTAGTCCATTGGAAGTTAAACAGATAATGAAGGCGGAAAAGGA 1083
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||
Sbjct 986 GGTATTGTCGCGGTTGCTTAGTCCTTTAGAAGTTAAACAGATCATGAAGGCGGAAAAAGA 1045
Query 1084 GTGTACTGCTAATCAGCTGAGACCTGAGCAGCTGATTGTGAATGGTTATCCATTAAAGCC 1143
|||||||||||||||||||||||||||||| ||||||||||||| || || ||||||||
Sbjct 1046 ATGTACTGCTAATCAGCTGAGACCTGAGCAGTTGATTGTGAATGGGTACCCGTTAAAGCC 1105
Query 1144 TGAGGAAATGGCTGACTTGCTCAACTGTCTTCTACCGCCTCAGAAGTTGAAACCCGGTAG 1203
|||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1106 CGAGGAAATGGCTGAGTTGCTCAACTGTCTTTTACCACCTCAGAAGTTGAAACCCGGTAG 1165
Query 1204 ATATTGGTACGACAAAGAATCTGGTCTATGGGGCAAGGAAGGAGAGAAACCAGATAGAGT 1263
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1166 ATATTGGTACGACAAAGAATCTGGTCTATGGGGCAAGGAACGAGAGAAACCAGATAGAGT 1225
Query 1264 CATTAGCTCGAACTTGAACTTCACCGGGAAGCTGTCCCCGGACGCGAGCAATGGGAACAC 1323
||||||||| |||||||||||||| |||||||||||||||||||| |||| ||| |||||
Sbjct 1226 CATTAGCTCAAACTTGAACTTCACGGGGAAGCTGTCCCCGGACGCAAGCAGTGGAAACAC 1285
Query 1324 GGAAGTTTATATTAACGGTAGGGAGATCACAAAGCTTGAGTTGAGGATTTTAAAGCTAGC 1383
||||||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||
Sbjct 1286 GGAAGTTTATATTAACGGTCGGGAGATCACAAAGCTTGAATTAAGGATTTTGAAGCTAGC 1345
Query 1384 AAATGTACAGTGTCCACGTGATACTCATTTTTGGGTATATGACGATGGACGTTATGAGGA 1443
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1346 AAATGTACAGTGTCCACGTGATACTCATTTTTGGGTATACGACGATGGGCGTTATGAGGA 1405
Query 1444 AGAAGGGCAGAATAATATCCGAGGAAACATTTGGGAGAAGGCATCTACGAGGTTCATGTG 1503
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 AGAAGGGCAGAATAATATTCGAGGAAACATTTGGGAGAAGGCATCTACGAGGTTCATGTG 1465
Query 1504 TGCGCTGTTTTCTTTACCTGTTCCTCAAGGACAACCTCGCGGAACGGTGCAACCATCGAG 1563
||||||||||||||||||||||||||| ||||||||||| || | |||||||||| ||||
Sbjct 1466 TGCGCTGTTTTCTTTACCTGTTCCTCACGGACAACCTCGTGGGATGGTGCAACCACCGAG 1525
Query 1564 TAATTATGCTACTGTTCCGAATTATATAGAGCATAAGAAGATTCAGAAGCTTCTACTTCT 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1526 TAATTATGCTACTGTTCCGAATTATATAGAGCATAAGAAGATTCAGAAGCTTCTACTTCT 1585
Query 1624 TGGTATTGAAGGTTCTGGAACTAGCACTATCTTCAAACAGGCCAAGTTTTTGTATGGAAA 1683
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1586 TGGTATCGAAGGGTCTGGAACTAGCACTATCTTCAAACAGGCCAAGTTTTTGTACGGAAA 1645
Query 1684 CAAGTTTTCAGTGGAAGAGCTTCAAGATATTAAGCTGATGGTACAAAGCAATATGTATAG 1743
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 CAAGTTTTCAGAGGAAGAGCTTCAAGATATTAAGCTGATGGTACAAAGCAATATGTATAG 1705
Query 1744 ATATCTCAGTATCTTACTCGATGGAAGAGAACGATTTGAAGAGGAAGCTTTATCGCATAC 1803
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 ATATCTCAGTATCCTACTTGATGGAAGAGAACGATTTGAAGAGGAAGCTTTATCGCATAC 1765
Query 1804 GAGAGGTTTAAACGCCGTTGAAGGAGATTCAGGAGGGGAAGAAGCAAACGACGAGGGTAC 1863
|||||||||||||||||||||||||||||||||||| || ||| ||| ||||| || ||
Sbjct 1766 GAGAGGTTTAAACGCCGTTGAAGGAGATTCAGGAGGCGAGGAAATAAATGACGATGGAAC 1825
Query 1864 TGTCACTACACCACAAAGCGTCTATACCTTGAACCCGAGGTTGAAGCATTTTTCGGATTG 1923
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1826 TGTCACTACACCACAATGCGTTTATACCTTGAACCCGAGGTTGAAGCATTTTTCGGATTG 1885
Query 1924 GCTTCTAGATATCATAGCAACTGGTGATCTCGATGCGTTTTTCCCAGCTGCAACACGTGA 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1886 GCTTCTAGATATCATAGCAACTGGTGATCTCGATGCGTTTTTCCCAGCTGCAACACGTGA 1945
Query 1984 ATATGCTCCATTGGTTGAAGAAGTTTGGAAAGATCCGGCTATACAAGCAACATATAGACG 2043
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1946 ATATGCTCCGTTGGTTGAAGAAGTTTGGAAAGATCCGGCGATACAAGCAACATATAGACG 2005
Query 2044 AAAAGATGAGCTGCATTTCCTTCCTGATGTCGCGGAATACTTCTTAAGCCGGGCCATGGA 2103
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2006 AAAAGATGAGCTGCATTTCCTTCCTGATGTCGCGGACTACTTCTTGAGCCGGGCCATGGA 2065
Query 2104 AGTATCGAGCAATGAGTATGAGCCTTCGGAGCGAGATATTGTATACGCAGAAGGTGTTAC 2163
|||||| ||||| || |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2066 AGTATCAAGCAACGAATATGAGCCTTCGGAGCGAGATATTGTGTATGCAGAAGGTGTTAC 2125
Query 2164 ACAAGGAAATGGATTAGCTTTCATGGAGTTTTCTCTTAGTGATCACAGTCCAATGTCTGA 2223
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2126 ACAAGGAAATGGATTAGCTTTCATGGAGTTTTCTCTCAGTGAACACAGTCCAATGTCTGA 2185
Query 2224 ATCTTACCCCGAAAACCCCGACGCCTTATCATCTCCTCAGCCAAAGTACCAGCTTATCCG 2283
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2186 ATCTTACCCCGAAAACCCCGACGCCTTATCATCTCCTCAACCAAAGTACCAGCTAATCCG 2245
Query 2284 CGTAAACGCAAAGGGAATGAACGATAGCTGCAAATGGGTAGAAATGTTTGAAGATGTACG 2343
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2246 CGTAAACGCAAAGGGGATGAACGATAGCTGCAAATGGGTAGAAATGTTTGAAGATGTACG 2305
Query 2344 AGCAGTCATCTTCTGCATCAGCTTAAGCGATTACGATCAAATCAACATCACACCCGAAAG 2403
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 2306 AGCAGTCATCTTCTGCATCAGCTTAAGCGATTACGATCAGATCAGCATAACACCCGAAAG 2365
Query 2404 CAGTGGAACAGTCCAGTATCAGAACAAGATGATCCAAAGCAAAGAACTTTTCGAATCAAT 2463
||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2366 CAGCGGAACAGTCCAGTTTCAGAACAAAATGATCCAAAGCAAAGAACTTTTCGAATCAAT 2425
Query 2464 GGTTAAGCACCCCTGTTTCAAAGACACACCTTTTATCTTGATCCTAAACAAGTATGATCA 2523
||| |||||||| |||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 2426 GGTCAAGCACCCGTGTTTCAAAGACACGCCTTTTATCTTGATCCTAAACAAATACGACCA 2485
Query 2524 GTTCGAAGAAAAGCTAAACCGTGCACCGTTAACATCTTGTGACTGGTTCAGCGATTTCTG 2583
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 2486 GTTCGAGGAAAAGCTAAACCGTGCACCGTTAACATCATGCGACTGGTTCAGCGATTTCTG 2545
Query 2584 CCCCGTGAGAACGAACAACAACGTACAGTCACTAGCTTACCAAGCTTACTTCTATGTAGC 2643
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 2546 CCCTGTGAGAACGAACAACAACGTGCAGTCACTAGCTTACCAAGCTTACTTCTACGTAGC 2605
Query 2644 AATGAAGTTCAAGCTTCTTTACTTTTCTATCACGGGTCAGAAACTGTTTGTGTGGCAAGC 2703
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2606 AATGAAGTTCAAGCTTCTTTACTCGTCTATCACGGGTCAGAAACTGTTTGTGTGGCAAGC 2665
Query 2704 TCGGGCTAGGGACCGCGCGAATGTGGATGAAGGGTTTAAGTATGTGAGAGAGGTTTTGAA 2763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2666 TCGGGCTAGGGACCGCGCGAATGTGGATGAAGGGTTTAAGTATGTGAGAGAGGTTTTGAA 2725
Query 2764 ATGGGATGAAGAGAAGGAAGAGAGTTACTTAAATGGTGGTGGAGAAGATTCGTTTTATAG 2823
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2726 ATGGGATGAAGAGAAGGAAGAGAGTTACTTGAATGGTGGTGGAGAAGATTCCTTTTATAG 2785
Query 2824 TACGGATATGAGTTCATCACCATATAGACCGGAGGAGTAAAATATTAAATCTCCATGAGG 2883
||||||||||||||| || ||||||||||||||||||||||| ||| ||
Sbjct 2786 TACGGATATGAGTTCGTCCCCATATAGACCGGAGGAGTAAAAGATT----------GA-- 2833
Query 2884 AAACTCTTGATTAAATGATTTGTTGTTATTTTTTAACTTTTAAGTAGAGAGATAATG--T 2941
|| ||||||||||| |||||| ||||||||||| |||||| ||||||||||||||| |
Sbjct 2834 AA-CTCTTGATTAA-TGATTTTTTGTTATTTTT-AACTTT-AAGTAGAGAGATAATTAAT 2889
Query 2942 G-G-GAAGAAGAAAAATAAAATTATTTGTAAT 2971
| | ||||||||||||||||||||||||||||
Sbjct 2890 GTGTGAAGAAGAAAAATAAAATTATTTGTAAT 2921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115832435045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5