BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31935.1 Length=529 Score E Sequences producing significant alignments: (Bits) Value Ahg473383 jgi|Araly1|473383|fgenesh2_kg.1__3337__AT1G31935.1 368 2e-101 > Ahg473383 jgi|Araly1|473383|fgenesh2_kg.1__3337__AT1G31935.1 Length=437 Score = 368 bits (199), Expect = 2e-101 Identities = 253/277 (91%), Gaps = 11/277 (4%) Strand=Plus/Plus Query 34 TAATGGGTCACTTGAAGCTCTCATCTTC---TACACCAAC-TCTTCTTATTGTTCTCTTG 89 |||||||||||||||||||||||||||| |||| | | ||||||| ||||||||||| Sbjct 1 TAATGGGTCACTTGAAGCTCTCATCTTCTTTTACAAC-TCTTCTTCTTGTTGTTCTCTTG 59 Query 90 ATCCT-TCACTTTCTTATGGTTTCTGCAGATTTTACAAGAACTCGAGTCAATTATGCGAT 148 | ||| |||| || || ||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 60 A-CCTGTCACCTTGTTCTGGTTTCTGCAGATTCTACAAGAACTCAAGTCAATTATGCGAT 118 Query 149 GAACCGCGAAGCCACCGAAGGAAATCAGGCTGGAGGATT-CAATCAAAGAGCAAGGATTA 207 | |||| |||||||| ||||||||||||||||||||||| | ||| |||||||||||||| Sbjct 119 GGACCGTGAAGCCACAGAAGGAAATCAGGCTGGAGGATTGC-ATCGAAGAGCAAGGATTA 177 Query 208 ACCACGGGAGCTATCGTGGGCCACGAAAACATCTAGTGAATCCCACAGTGGTAGATGTTT 267 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 178 ACCACGGGAGCTATCGTGGGCCACGAAAACATCTAGTGAATCCCACAGTGGCAGATGTTT 237 Query 268 ACACAGTTCCTGAATCTTCAGTTTGAATTGAA-GATT 303 |||||||||||||||||||||||||||| ||| |||| Sbjct 238 ACACAGTTCCTGAATCTTCAGTTTGAAT-GAAAGATT 273 Score = 213 bits (115), Expect = 1e-54 Identities = 152/169 (90%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 354 TATGTATTTTCTTAATGTTGAAGTAAAAAACCAAAGTGGATAAACAAAGTTTCTTTGAGT 413 |||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 275 TATGTAATTTCTTCATGTTGAAGT-AAAAACCAAAGTGGATAAACAAAGTTTCTTTGAGT 333 Query 414 TTGCAAAGTACTTTTCTCTCTTACCATATATAATGCTGATAGTGAAATTTACTTGAGAAG 473 || |||||||||||||||||| ||||||| | ||| |||||||||||||||||||| || Sbjct 334 TTAAAAAGTACTTTTCTCTCTTCCCATATA-A-TGCCGATAGTGAAATTTACTTGAGGAG 391 Query 474 AACTCGATGCATAATAATACACTGCAAAAGTTAAAGCCTAAAGAGCAAA 522 ||||| ||||| |||| | |||||||||||||||||||||| ||||| Sbjct 392 AACTCAATGCACAATAC--C-CTGCAAAAGTTAAAGCCTAAAGGGCAAA 437 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19268572445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5