BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G31935.1

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg473383 jgi|Araly1|473383|fgenesh2_kg.1__3337__AT1G31935.1         368    2e-101


> Ahg473383 jgi|Araly1|473383|fgenesh2_kg.1__3337__AT1G31935.1
Length=437

 Score =  368 bits (199),  Expect = 2e-101
 Identities = 253/277 (91%), Gaps = 11/277 (4%)
 Strand=Plus/Plus

Query  34   TAATGGGTCACTTGAAGCTCTCATCTTC---TACACCAAC-TCTTCTTATTGTTCTCTTG  89
            ||||||||||||||||||||||||||||   |||| |  | ||||||| |||||||||||
Sbjct  1    TAATGGGTCACTTGAAGCTCTCATCTTCTTTTACAAC-TCTTCTTCTTGTTGTTCTCTTG  59

Query  90   ATCCT-TCACTTTCTTATGGTTTCTGCAGATTTTACAAGAACTCGAGTCAATTATGCGAT  148
            | ||| |||| || || ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  60   A-CCTGTCACCTTGTTCTGGTTTCTGCAGATTCTACAAGAACTCAAGTCAATTATGCGAT  118

Query  149  GAACCGCGAAGCCACCGAAGGAAATCAGGCTGGAGGATT-CAATCAAAGAGCAAGGATTA  207
            | |||| |||||||| ||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct  119  GGACCGTGAAGCCACAGAAGGAAATCAGGCTGGAGGATTGC-ATCGAAGAGCAAGGATTA  177

Query  208  ACCACGGGAGCTATCGTGGGCCACGAAAACATCTAGTGAATCCCACAGTGGTAGATGTTT  267
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  178  ACCACGGGAGCTATCGTGGGCCACGAAAACATCTAGTGAATCCCACAGTGGCAGATGTTT  237

Query  268  ACACAGTTCCTGAATCTTCAGTTTGAATTGAA-GATT  303
            |||||||||||||||||||||||||||| ||| ||||
Sbjct  238  ACACAGTTCCTGAATCTTCAGTTTGAAT-GAAAGATT  273


 Score =  213 bits (115),  Expect = 1e-54
 Identities = 152/169 (90%), Gaps = 6/169 (4%)
 Strand=Plus/Plus

Query  354  TATGTATTTTCTTAATGTTGAAGTAAAAAACCAAAGTGGATAAACAAAGTTTCTTTGAGT  413
            |||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  275  TATGTAATTTCTTCATGTTGAAGT-AAAAACCAAAGTGGATAAACAAAGTTTCTTTGAGT  333

Query  414  TTGCAAAGTACTTTTCTCTCTTACCATATATAATGCTGATAGTGAAATTTACTTGAGAAG  473
            ||  |||||||||||||||||| ||||||| | ||| |||||||||||||||||||| ||
Sbjct  334  TTAAAAAGTACTTTTCTCTCTTCCCATATA-A-TGCCGATAGTGAAATTTACTTGAGGAG  391

Query  474  AACTCGATGCATAATAATACACTGCAAAAGTTAAAGCCTAAAGAGCAAA  522
            ||||| ||||| ||||   | |||||||||||||||||||||| |||||
Sbjct  392  AACTCAATGCACAATAC--C-CTGCAAAAGTTAAAGCCTAAAGGGCAAA  437



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19268572445


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5