BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31940.1
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473384 jgi|Araly1|473384|fgenesh2_kg.1__3338__AT1G31940.1 1014 0.0
> Ahg473384 jgi|Araly1|473384|fgenesh2_kg.1__3338__AT1G31940.1
Length=842
Score = 1014 bits (549), Expect = 0.0
Identities = 648/696 (93%), Gaps = 6/696 (1%)
Strand=Plus/Plus
Query 187 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCA-CTCATCGACGAACACAAAG 245
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 152 ATGGTTGGTATATTTTCAAGATTCTCTGTTGGTAGAAGCAGC-CATCGACGAACACAAAG 210
Query 246 TGCAATCGATGATAAGGAAGTATTGGCTCCAAATTCTGATGTTATTGCAGCAACCACCAC 305
||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 211 TGCAATCGATGATAAGGAAGTGTTGGCTCCAAATTCTGATGTTGTTGCAGCAACTACCAC 270
Query 306 AACTGCAACTACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 365
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 AACTGCAACAACTGCTACTCATGGGATTGAAGTAGCTACAGAGTTTAAACCGGTGGAACA 330
Query 366 TCCGGTCGAGCCGTTAGACAACGATCTACCGATTCAGTGTCCATTACCTGAACCATCCAT 425
|||||||||||| || || |||||| ||||||||||||||||||| ||||||||||||||
Sbjct 331 TCCGGTCGAGCCTTTGGATAACGATTTACCGATTCAGTGTCCATTGCCTGAACCATCCAT 390
Query 426 TCTAAATGATGGGAGAATCTGGAAGGAGAGAGTATCAGCGTCTATGAGGAGAAAAGGTGA 485
||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 391 TCTTAATGATGGAAGAATCTGGAAGGAGAGAGTATCGGCGTCTATGATGAGAAAAGGTGA 450
Query 486 TTTGCAGATTGTGAAAGATGAGGCTGCTTCTGAGTCTGATGGCTCAGCACCGAAACCGCC 545
|| |||||||| |||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 451 TTCGCAGATTGCGAAAGATGAGGCTGCTTCTGAGTCTGATGGATCCGCACCAAAACCGCC 510
Query 546 TCGCCCGCCTCAGCCAAATCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 605
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCGCCCGCCTCTGCCAAACCGTTCGATCTTGCCATCACTTAGTGCCCCTGAACACAACTT 570
Query 606 GCTAAATCTACTAGAAGAATGCAATGCGATGCCACCGGTAACATCTAAGAATGGATGAAC 665
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 571 GCTAAATCTACTAGAAGAATGCAGCGCGATGCCGCCGGTAACATCTAAGAATGGATGAAC 630
Query 666 AAAGTTGCTTAAACTCGATATTTATCACACCGATACAAGATTGTTCCTTACAACCACTCT 725
|||||| |||||||||||||| ||| ||||||||||||| |||||||| | ||| |||||
Sbjct 631 AAAGTTCCTTAAACTCGATATATATTACACCGATACAAGCTTGTTCCTCAAAACAACTCT 690
Query 726 CGAATCTTTGTTTTTCGTTGTTTACGATTTTTACTTATGTGTGTGCCAGAACAAAACCAA 785
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 691 TGAATCTCTGTTTTTCATTGTTTACGATTTT-ACTTATGTGTGTGCCAGAACAAAACTAA 749
Query 786 ATCATAGTGTATGTTATATAGATTATACAGGCAACTAAAATTCATTAAGCTTCTGCTCTA 845
|||||||||||||||||||| |||||| |||||||||| |||||||||||| |||||||
Sbjct 750 ATCATAGTGTATGTTATATATATTATATAGGCAACTAAGGTTCATTAAGCTTATGCTCTA 809
Query 846 TGTACCTCAACAACACCAATATTCTACAATGGAAGT 881
| || ||||||| | | | |||||||||||||||||
Sbjct 810 TATATCTCAACA-C-CGA-TATTCTACAATGGAAGT 842
Score = 132 bits (71), Expect = 5e-30
Identities = 123/145 (85%), Gaps = 15/145 (10%)
Strand=Plus/Plus
Query 1 AAATCAAAAAGCATTTATCATCCATTCATT---C-A---CC--TGGAGATATAAAGCAAC 51
||| |||||||||||||||||||||||||| | | || || |||||||||||||
Sbjct 1 AAACCAAAAAGCATTTATCATCCATTCATTCACCAAGTTCCTTTGAAGATATAAAGCAA- 59
Query 52 CTTCTCTTTTTCTAAGTGGCTCAAGTTAAATTTCTCTTTTGTGTTTCTTCGTCTTCTTCA 111
| | || |||| ||||||| | ||| |||||||||| ||| |||||||||||||||||||
Sbjct 60 CGT-TC-TTTT-TAAGTGGTTGAAGATAAATTTCTC-TTT-TGTTTCTTCGTCTTCTTCA 114
Query 112 TACAAAGTCAAGAATCAAAACCAAG 136
|||||||||||||||||||| ||||
Sbjct 115 TACAAAGTCAAGAATCAAAATCAAG 139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33357552375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5