BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31970.1 Length=1852 Score E Sequences producing significant alignments: (Bits) Value Ahg913002 jgi|Araly1|913002|Al_scaffold_0001_3256 2582 0.0 Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 1229 0.0 Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 1184 0.0 > Ahg913002 jgi|Araly1|913002|Al_scaffold_0001_3256 Length=1620 Score = 2582 bits (1398), Expect = 0.0 Identities = 1553/1626 (96%), Gaps = 18/1626 (1%) Strand=Plus/Plus Query 56 ATGGCTGGACAAA-AGCAAGAGCTTCCCGTCTCCGGCGAACCTTTAGCCGTCGAGAGTCC 114 ||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1 ATGGCTGGA-AAATTCCAAGAGCTTCCCATCTCCGGCGAACCTTTAGCCGCCGAGAGTCC 59 Query 115 GATGACCAacaagaagaagaagaaaagcaagaagaacaaacatacagaggaaaatcatga 174 ||||| ||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| Sbjct 60 GATGATCAATAAGAAGAAGAAGAAGAGCAAGAAGAACAAACACACAGAGGAAATTCATGA 119 Query 175 agtcgaagaagTGCCTCAAGAGGTCACTAATGGTGTagaggaagagttgagtaataaaga 234 |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 120 AGTC---GAAGTGCCTCAAGAGGTCACGAATGGTGTAGAGGAAGAGTTGAGTAATAAGGA 176 Query 235 gaagaagaagaaacgtaagagagaggagaaagag-tctgagaagaataagaagaaggatg 293 ||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| Sbjct 177 GAAGAAGAAGAAACGTAAGAGAGAGGAGAAACAGAT-TGAGAAGAATAAGAAGAAGGATG 235 Query 294 tcccggagaagaagcttgaagCTGAGGATTT-AG-G------A-GAAGGAGAGAGTGAAC 344 |||||||||||||||| |||||||||||||| || | | | |||||||||||||| Sbjct 236 TCCCGGAGAAGAAGCTAGAAGCTGAGGATTTAAGTGTTACCAATGGAGGAGAGAGTGAAC 295 Query 345 AACAGAAGGTTGTTGTGACTGGGAAAGGTGTGGAAGAAGCAAAGTACGCAGCTTTGAAGA 404 |||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||||| Sbjct 296 AACAGAAGGTTGTTGTGACTGGTAAAGATGTGGAAGAGGCAAAGTACGCACCTTTGAAGA 355 Query 405 CTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAAGC 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 356 CTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAAAC 415 Query 465 CGTCTCCGATTCAGTCACATACGTGGCCGTTTTTGTTAGATGGGCGTGATCTTATCGGGA 524 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 416 CGTCTCCGATTCAGTCACATACATGGCCGTTTTTGTTAGATGGTCGTGATCTTATCGGGA 475 Query 525 TTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATGTGT 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATGTGT 535 Query 585 TGAAGAAAAATAAGAAGATTGGTGGAGGATCAAAGAAGGTTAATCCTACTTGTTTAGTTC 644 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 536 TGAAGAAGAATAAGAAGATTGGTGGAGGATCAAAGAATGTTAATCCTACTTGTTTGGTTC 595 Query 645 TTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGCGTGAAGCTGGAGAAC 704 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 596 TTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGAGTGAAGCTGGAGAAC 655 Query 705 CGTGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAGGGCCTCAAATAAGTG 764 | |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 656 CATGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAAGGCCTCAAATAAATG 715 Query 765 CAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGATTG 824 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 716 CAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGATTGAGAGACTTGATTG 775 Query 825 AGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTCGTATTGGATGAAGCAGATCGAA 884 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 776 AGTCTAATGAGCTTCGTCTCTCGGATGTTTCCTTTGTGGTATTGGATGAAGCAGATCGAA 835 Query 885 TGCTTGATATGGGTTTCGAGGAACCTGTCCGGTTTATATTGAGTAACACAAATAAAGTTC 944 |||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| Sbjct 836 TGCTTGATATGGGTTTCGAGGAACCTGTTCGGTTTATATTGAGCAAGACAAATAAAGTTC 895 Query 945 GTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGGAAT 1004 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 896 GTCAGATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCTCAGGAAT 955 Query 1005 TCATGGATCCAAATCCAATCAAGGTGA-TCATAGGTTCTGTAGACTTAGCTGCCAACCAC 1063 ||||||||||||||||||||||||| | |||||||||| ||||| ||||||||||||||| Sbjct 956 TCATGGATCCAAATCCAATCAAGGT-AGTCATAGGTTCCGTAGATTTAGCTGCCAACCAC 1014 Query 1064 GACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGATCAGCGTCTCATTGCA 1123 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1015 GACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGATCAGCGTCTTGTTGCT 1074 Query 1124 TTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCTTTATACAAG 1183 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1075 TTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCATTATACAAG 1134 Query 1184 GTGGAAGCTGAACGTCTCGAGCGTTTTCTTCAGCAAAGAGGTTGGAAAGCTGTATCTATA 1243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1135 GTGGAAGCTGAACGTCTCGAGCGTTTTCTTCAGCAAAGAGGTTGGAAAGCTGTATCTATA 1194 Query 1244 CACGGAAACAAAGCACAGAGCGAACGTACCAGGTCTTTATCATTGTTCAAAGAAGGATCC 1303 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1195 CACGGAAACAAAGCACAAAGCGAACGTACCAGGTCTTTATCATTGTTCAAAGAAGGATCC 1254 Query 1304 TGCCCGTTACTGGTGGCTACTGATGTTGCAGCAAGAGGGCTTGATATCCCGGACGTGGAA 1363 |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1255 TGCCCGCTACTGGTGGCTACTGATGTTGCAGCAAGAGGGCTCGATATCCCAGACGTGGAA 1314 Query 1364 GTTGTGATAAACTACACTTTCCCTTTAACAACAGAGGATTATGTACACAGAATCGGGAGG 1423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 GTTGTGATAAACTACACTTTCCCTTTAACAACAGAGGATTATGTACACAGAATCGGGAGG 1374 Query 1424 ACAGGAAGAGCGGGTAAAAAGGGCGTTGCACACACCTTCTTCACGCCACTGAACAAGGGT 1483 ||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 1375 ACAGGAAGAGCGGGTAAAAAGGGCGTTGCACACACATTCTTCACGCAACAGAACAAGGGT 1434 Query 1484 CTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTT 1543 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| Sbjct 1435 CTTGCCGGAGAACTTGTGAATGTTCTCAGGGAAGCAGGACAAGTTGTGCCAGATGATCTT 1494 Query 1544 TTGAAGTTTGGCACTCATGTAAAGAAAAAGGAATCAAAATTGTATGGAGCTCATTTCAAA 1603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 TTGAAGTTTGGCACTCATGTAAAGAAAAAGGAATCAAAATTGTATGGAGCTCATTTCAAA 1554 Query 1604 GAAATAGCTGCTGATGCTCCTAAAGCTACGAAGATCACATTCGATAATTCTGATGACGAA 1663 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1555 GAAATAGCAGCTGATGCTCCAAAAGCTACGAAGATCACATTCGATAATTCTGATGACGAA 1614 Query 1664 GACTAG 1669 |||||| Sbjct 1615 GACTAG 1620 > Ahg355139 jgi|Araly1|355139|fgenesh1_pg.C_scaffold_7002312 Length=1965 Score = 1229 bits (665), Expect = 0.0 Identities = 877/973 (90%), Gaps = 39/973 (4%) Strand=Plus/Plus Query 234 agaagaagaagaaacgtaagagagaggagaaa--gagtctgagaagaataagaagaagga 291 |||||| ||| ||| ||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 11 AGAAGACGAATAAAAGTAAGAGAGAGGAGAAACTGAG--TGAGAAGAATAAGAAGAAGGA 68 Query 292 tgtcccggagaagaagcttgaagCTGAGGA-TTTAG-G--A-GAA-GGA-GAG--AGTGA 342 |||||||||||||||||| ||||||||||| || || | | || ||| ||| ||||| Sbjct 69 TGTCCCGGAGAAGAAGCTAGAAGCTGAGGAGTTAAGTGTTACCAATGGAGGAGAAAGTGA 128 Query 343 ACAACAGAAGGTTGTTGTGACTGGGAAAGGTGTGGAAGAAGCAAAGTACGCAGCTTTGAA 402 |||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 129 GCAACCGAAGGTTGTTATGACTGGGAAAGATGTGGAAGAAGCAAAGTACGCAGCTTTGAA 188 Query 403 GACTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAA 462 ||||||||||||||||||||||||||||||||||||||| | ||| | | | Sbjct 189 GACTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGA-----G-AAG-C---C----A 234 Query 463 GCCGTCTCCGATTCAGTCACATACGTGGCC-GTTTTTGTTAGATGGGCGTGATCTTATCG 521 ||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||| Sbjct 235 ----TCTCCGATTCAGTCACATAAGTGGCCAG-TTTTGTTAGATGGTCGTGATCTTATCG 289 Query 522 GGATTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATG 581 ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 290 GGATTGCAAAAACTGGGTCAGGTAAGACATTGGCTTCTGGGATTCTTGCGATTATGCATG 349 Query 582 TGTTGAAGAAAAATAAGAAGATTGGTGGAGGATCAAAGAAGGTTAATCCTACTTGTTTAG 641 |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 350 TGTTAAAGAAGAATAAGAAGATTGGTGGAGGATCAAAGAATGTTAATCCTACTTGTTTGG 409 Query 642 TTCTTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGCGTGAAGCTGGAG 701 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 410 TTCTTTCTCCTACACGAGAATTGGATGTTCAGATTTCTGATGTTTTGAGTGAAGCTGGAG 469 Query 702 AACCGTGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAGGGCCTCAAATAA 761 |||| |||||| ||||||| || ||||| |||||||||||||||||| ||| |||||||| Sbjct 470 AACCTTGTGGTGTGAAATCAATATGTGTATATGGTGGAAGCTCTAAAAGGCGTCAAATAA 529 Query 762 GTGCAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGA 821 |||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 530 GTGCTATTCGATTTGGAGTTGATATTGTCATTGGTATGCATGGTCGTTTGAGAGACTTGA 589 Query 822 TTGAGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTCGTATTGGATGAAGCAGATC 881 |||||||||||| |||||||| |||| | ||||||||||| ||||||||||||||| ||| Sbjct 590 TTGAGTCTAATGAGCTTCGTCCCTCGAAAGTTTCCTTTGTGGTATTGGATGAAGCATATC 649 Query 882 GAATGCTTGATATGGGTTTCGAGGAACCTGTCCGGTTTATATTGAGTAACACAAATAAAG 941 |||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct 650 AAATGCTTGATATGGGTTTCGAGGAACCTGTTCGGTTTATATTGAGCAAGACAAATAAAG 709 Query 942 TTCGTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGG 1001 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 710 TTCGTGAGATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCGCAGG 769 Query 1002 AATTCATGGATCCAAATCCAATCAAGGT-GATCATAGGTTCTGTAGACTTAGCTGCCAAC 1060 |||||||||||||||| ||||||||||| | ||||||| || ||||||||||| |||||| Sbjct 770 AATTCATGGATCCAAACCCAATCAAGGTAG-TCATAGGCTCCGTAGACTTAGCCGCCAAC 828 Query 1061 CACGACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGAT-CAGCGTCTCAT 1119 |||||||||| ||||||||||||||||||||||||||||||||| || ||||| || | Sbjct 829 CACGACGTTACGCAAATCATTGAGGTCTTGGATGAACGTGCGCG-GAAGCAGCGACTTGT 887 Query 1120 TGCATTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCTTTATA 1179 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 888 TGCCTTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTACTTGCTTTACA 947 Query 1180 -CAAGGTGGAAGC 1191 ||||||| |||| Sbjct 948 ACAAGGTG-AAGC 959 > Ahg339306 jgi|Araly1|339306|fgenesh1_pg.C_scaffold_2001405 Length=1836 Score = 1184 bits (641), Expect = 0.0 Identities = 869/973 (89%), Gaps = 39/973 (4%) Strand=Plus/Plus Query 234 agaagaagaagaaacgtaagagagaggagaaa--gagtctgagaagaataagaagaagga 291 |||||| ||| ||| ||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 11 AGAAGACGAATAAAAGTAAGAGAGAGGAGAAACTGAG--TGAGAAGAATAAGAAGAAGGA 68 Query 292 tgtcccggagaagaagcttgaagCTGAGGA-TTTAG-G--A-GAA-GGA-GAG--AGTGA 342 |||||||||||||||||| ||||||||||| || || | | || ||| ||| ||||| Sbjct 69 TGTCCCGGAGAAGAAGCTAGAAGCTGAGGAGTTAAGTGTTACCAATGGAGGAGAAAGTGA 128 Query 343 ACAACAGAAGGTTGTTGTGACTGGGAAAGGTGTGGAAGAAGCAAAGTACGCAGCTTTGAA 402 |||| |||||||||| |||||||||||| |||||||||||||||||||||| ||||||| Sbjct 129 GCAACCGAAGGTTGTTATGACTGGGAAAGATGTGGAAGAAGCAAAGTACGCAACTTTGAA 188 Query 403 GACTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAA 462 |||||||||||||||||||||| ||||||| | | | || | ||| | || Sbjct 189 GACTTTTGCTGAATCGAATTTGACGGAGAA-----T-G--T-TT-T-AGA------A-AA 230 Query 463 GCCGTCTCCGATTCAGTCACATACGTGGCC-GTTTTTGTTAGATGGGCGTGATCTTATCG 521 ||| ||||||||||||||||||| |||||| | ||||||||||||| ||||||||||||| Sbjct 231 GCCATCTCCGATTCAGTCACATAAGTGGCCAG-TTTTGTTAGATGGTCGTGATCTTATCG 289 Query 522 GGATTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATG 581 ||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 290 GGATTGCAAAAACTGGGTCAGGTAAGACATTGGCTTCTGGGATTCTTGCGATTATGCATG 349 Query 582 TGTTGAAGAAAAATAAGAAGATTGGTGGAGGATCAAAGAAGGTTAATCCTACTTGTTTAG 641 |||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| | Sbjct 350 TGTTAAAGAAGAATAAGAAGATTGGTGGAGGATCAAAGAATGTCAATCCTACTTGTTTGG 409 Query 642 TTCTTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGCGTGAAGCTGGAG 701 |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 410 TTCTTTCTCCTACACGAGAATTGGATGTTCAGATTTCTGATGTTTTGAGTGAAGCTGGAG 469 Query 702 AACCGTGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAGGGCCTCAAATAA 761 |||| |||||| ||||||| || ||||| |||||||||||||||||| ||| |||||||| Sbjct 470 AACCTTGTGGTGTGAAATCAATATGTGTATATGGTGGAAGCTCTAAAAGGCGTCAAATAA 529 Query 762 GTGCAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGA 821 ||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 530 ATGCTATTCGATTTGGAGTTGATATTGTCATTGGTATGCATGGTCGTTTGAGAGACTTGA 589 Query 822 TTGAGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTCGTATTGGATGAAGCAGATC 881 |||||||||||| |||||||| |||| | ||||||||||| ||||||||||||||||||| Sbjct 590 TTGAGTCTAATGAGCTTCGTCCCTCGAAAGTTTCCTTTGTGGTATTGGATGAAGCAGATC 649 Query 882 GAATGCTTGATATGGGTTTCGAGGAACCTGTCCGGTTTATATTGAGTAACACAAATAAAG 941 ||||||||||||| ||||||| |||||||| ||||||| |||||| || |||||||||| Sbjct 650 AAATGCTTGATATGAGTTTCGAAGAACCTGTTCGGTTTACATTGAGCAAGACAAATAAAG 709 Query 942 TTCGTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGG 1001 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 710 TTCGTGAGATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCGCAGG 769 Query 1002 AATTCATGGATCCAAATCCAATCAAGGT-GATCATAGGTTCTGTAGACTTAGCTGCCAAC 1060 |||||||||||||||| ||||||||||| | ||||||| || ||||||||||| |||||| Sbjct 770 AATTCATGGATCCAAACCCAATCAAGGTAG-TCATAGGCTCCGTAGACTTAGCCGCCAAC 828 Query 1061 CACGACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGAT-CAGCGTCTCAT 1119 |||||||||| ||||||||||||||||||||||||||||||||| || ||||| || | Sbjct 829 CACGACGTTACGCAAATCATTGAGGTCTTGGATGAACGTGCGCG-GAAGCAGCGACTTGT 887 Query 1120 TGCATTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCTTTATA 1179 ||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| | Sbjct 888 TGCCTTACTAGAAAAATACCATAAATCTCAAAAGAACAGGTTTTTGGTACTTGCTTTACA 947 Query 1180 -CAAGGTGGAAGC 1191 ||||||| |||| Sbjct 948 ACAAGGTG-AAGC 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69552787370 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5