BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G31990.1 Length=1272 Score E Sequences producing significant alignments: (Bits) Value Ahg920040 jgi|Araly1|920040|scaffold_101321.1 453 1e-126 Ahg939353 jgi|Araly1|939353|scaffold_503544.1 270 2e-71 > Ahg920040 jgi|Araly1|920040|scaffold_101321.1 Length=427 Score = 453 bits (245), Expect = 1e-126 Identities = 329/369 (89%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 330 ACA-GAGTCATGTT-GGAAAGGCACATCCCTTGAAGATGGACCAAATGCCTCGTCGGTAT 387 ||| |||||||||| | |||||| | |||||||||||||||| ||||||||||||||| Sbjct 19 ACATGAGTCATGTTACG-AAGGCAAAGACCTTGAAGATGGACCAGATGCCTCGTCGGTAT 77 Query 388 CGCAACCGTCGAAAAACACTCCGCCTTGCTACAAAT-ACTACTCTCTCTTCCATAATTAT 446 ||||||| ||||||||||||| | ||||||| | | | ||||||||||||||||||||| Sbjct 78 CGCAACCATCGAAAAACACTCAGTCTTGCTAGATCTGA-TACTCTCTCTTCCATAATTAT 136 Query 447 GCGATTTTGTTGGCTCCTC-GTAGCCATCTATCTCTCTTGTAGAGCGTTTTTCCGACGTC 505 ||||||||||||| ||| | |||||||| |||||| || ||||||||||| ||| ||| Sbjct 137 GCGATTTTGTTGG-TCCCCAATAGCCATCCATCTCTTTTTTAGAGCGTTTTCCCGGCGTT 195 Query 506 CACTACTGTGTTATTGTCGGCGTTCCGTCTCCGATTGCGTTCCATCTTCTTCTTGTAACC 565 ||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| || Sbjct 196 CACTATTGTGTTATTGTCGGCGTTTTGTCTCCGATTGCGTTTCATCTTCTTCTTGTAGCC 255 Query 566 AATTAGTGATCATTGGTCCACAAATGAAGTGGCGTTCTCGGCAGTTGTCATTTTCCTCCG 625 || |||| |||||||| |||| |||||||||| ||| ||||||||||||||||||||||| Sbjct 256 AAGTAGTCATCATTGGCCCACGAATGAAGTGGTGTTTTCGGCAGTTGTCATTTTCCTCCG 315 Query 626 CCAAATGGTACGGAGATGTAATTTGGATATTTGATCCTGGTATCATTGGGGCTCAGATTG 685 ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| Sbjct 316 CCAAATGGTACGGAGATGTAATTTGGACATTTGATCCTGGTATCATTGGGACTCAGATTG 375 Query 686 ACAATGAAG 694 ||| ||||| Sbjct 376 ACAGTGAAG 384 > Ahg939353 jgi|Araly1|939353|scaffold_503544.1 Length=283 Score = 270 bits (146), Expect = 2e-71 Identities = 229/268 (85%), Gaps = 9/268 (3%) Strand=Plus/Plus Query 330 ACA-GAGTCATGTT-GGAAAGGCACATCCCTTGAAGATGGACCAAATGCCTCGTCGGTAT 387 ||| |||||||||| | |||||| | |||||||||| ||||| ||||||||||||||| Sbjct 19 ACATGAGTCATGTTACG-AAGGCAAAGACCTTGAAGATAGACCAGATGCCTCGTCGGTAT 77 Query 388 CGCAACCGTCGAAAAACACTCCGCCTTGCTACAAAT-ACTACTCTCTCTTCCATAATTAT 446 ||||||| |||||||| |||| | ||||||| | | | ||||||||||||||||||||| Sbjct 78 CGCAACCATCGAAAAAAACTCAGTCTTGCTAGATCTGA-TACTCTCTCTTCCATAATTAT 136 Query 447 GCGATTTTGTTGGCTCCTCG-TAGCCATCTATCTCTCT-TGT-AGAGCGTTTTTCCGACG 503 ||||||||||||| ||| | |||||||| |||||||| | | |||||||||| ||| || Sbjct 137 GCGATTTTGTTGG-TCCCCAATAGCCATCCATCTCTCTCTTTTAGAGCGTTTTCCCGGCG 195 Query 504 TCCACTACTGTGTTATTGTCGGCGTTCCGTCTCCGATTGCGTTCCATCTTCTTCTTGTAA 563 | ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 196 TTCACTATTGTGTTATTGTCGGCGTTTTATCTCCGATTGCGTTTCATCTTCTTCTTGTAG 255 Query 564 CCAATTAGTGATCATTGGTCCACAAATG 591 |||| |||| |||||||| |||| |||| Sbjct 256 CCAAGTAGTCATCATTGGCCCACGAATG 283 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47539277499 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5