BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G31990.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920040 jgi|Araly1|920040|scaffold_101321.1 453 1e-126
Ahg939353 jgi|Araly1|939353|scaffold_503544.1 270 2e-71
> Ahg920040 jgi|Araly1|920040|scaffold_101321.1
Length=427
Score = 453 bits (245), Expect = 1e-126
Identities = 329/369 (89%), Gaps = 7/369 (2%)
Strand=Plus/Plus
Query 330 ACA-GAGTCATGTT-GGAAAGGCACATCCCTTGAAGATGGACCAAATGCCTCGTCGGTAT 387
||| |||||||||| | |||||| | |||||||||||||||| |||||||||||||||
Sbjct 19 ACATGAGTCATGTTACG-AAGGCAAAGACCTTGAAGATGGACCAGATGCCTCGTCGGTAT 77
Query 388 CGCAACCGTCGAAAAACACTCCGCCTTGCTACAAAT-ACTACTCTCTCTTCCATAATTAT 446
||||||| ||||||||||||| | ||||||| | | | |||||||||||||||||||||
Sbjct 78 CGCAACCATCGAAAAACACTCAGTCTTGCTAGATCTGA-TACTCTCTCTTCCATAATTAT 136
Query 447 GCGATTTTGTTGGCTCCTC-GTAGCCATCTATCTCTCTTGTAGAGCGTTTTTCCGACGTC 505
||||||||||||| ||| | |||||||| |||||| || ||||||||||| ||| |||
Sbjct 137 GCGATTTTGTTGG-TCCCCAATAGCCATCCATCTCTTTTTTAGAGCGTTTTCCCGGCGTT 195
Query 506 CACTACTGTGTTATTGTCGGCGTTCCGTCTCCGATTGCGTTCCATCTTCTTCTTGTAACC 565
||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 196 CACTATTGTGTTATTGTCGGCGTTTTGTCTCCGATTGCGTTTCATCTTCTTCTTGTAGCC 255
Query 566 AATTAGTGATCATTGGTCCACAAATGAAGTGGCGTTCTCGGCAGTTGTCATTTTCCTCCG 625
|| |||| |||||||| |||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 256 AAGTAGTCATCATTGGCCCACGAATGAAGTGGTGTTTTCGGCAGTTGTCATTTTCCTCCG 315
Query 626 CCAAATGGTACGGAGATGTAATTTGGATATTTGATCCTGGTATCATTGGGGCTCAGATTG 685
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 316 CCAAATGGTACGGAGATGTAATTTGGACATTTGATCCTGGTATCATTGGGACTCAGATTG 375
Query 686 ACAATGAAG 694
||| |||||
Sbjct 376 ACAGTGAAG 384
> Ahg939353 jgi|Araly1|939353|scaffold_503544.1
Length=283
Score = 270 bits (146), Expect = 2e-71
Identities = 229/268 (85%), Gaps = 9/268 (3%)
Strand=Plus/Plus
Query 330 ACA-GAGTCATGTT-GGAAAGGCACATCCCTTGAAGATGGACCAAATGCCTCGTCGGTAT 387
||| |||||||||| | |||||| | |||||||||| ||||| |||||||||||||||
Sbjct 19 ACATGAGTCATGTTACG-AAGGCAAAGACCTTGAAGATAGACCAGATGCCTCGTCGGTAT 77
Query 388 CGCAACCGTCGAAAAACACTCCGCCTTGCTACAAAT-ACTACTCTCTCTTCCATAATTAT 446
||||||| |||||||| |||| | ||||||| | | | |||||||||||||||||||||
Sbjct 78 CGCAACCATCGAAAAAAACTCAGTCTTGCTAGATCTGA-TACTCTCTCTTCCATAATTAT 136
Query 447 GCGATTTTGTTGGCTCCTCG-TAGCCATCTATCTCTCT-TGT-AGAGCGTTTTTCCGACG 503
||||||||||||| ||| | |||||||| |||||||| | | |||||||||| ||| ||
Sbjct 137 GCGATTTTGTTGG-TCCCCAATAGCCATCCATCTCTCTCTTTTAGAGCGTTTTCCCGGCG 195
Query 504 TCCACTACTGTGTTATTGTCGGCGTTCCGTCTCCGATTGCGTTCCATCTTCTTCTTGTAA 563
| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 196 TTCACTATTGTGTTATTGTCGGCGTTTTATCTCCGATTGCGTTTCATCTTCTTCTTGTAG 255
Query 564 CCAATTAGTGATCATTGGTCCACAAATG 591
|||| |||| |||||||| |||| ||||
Sbjct 256 CCAAGTAGTCATCATTGGCCCACGAATG 283
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5