BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32030.1
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473386 jgi|Araly1|473386|fgenesh2_kg.1__3340__AT1G32030.1 1227 0.0
Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791 220 1e-56
Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1 220 1e-56
> Ahg473386 jgi|Araly1|473386|fgenesh2_kg.1__3340__AT1G32030.1
Length=975
Score = 1227 bits (664), Expect = 0.0
Identities = 905/1013 (89%), Gaps = 49/1013 (5%)
Strand=Plus/Plus
Query 1 ATGTCTACGTATTATAATGATCATCTCGCGGCTGCGGAGAAGGACATAAGCTCGAGTAAT 60
||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGCCTACGTATTACAATGATCATCTCGCAGCTGCGGAGAAGGACATAAGCTCGAGTAAA 60
Query 61 TTCTGTAATTTAGTGGATGCTTCCGTTATGTTATACGACGAAGAACACCGTGATCTTCTT 120
|||||||| || ||||||||||| || ||||||||||| ||| |||||||| | ||||||
Sbjct 61 TTCTGTAACTTGGTGGATGCTTCGGTCATGTTATACGAAGAAAAACACCGTAAACTTCTT 120
Query 121 CCAAAGAAAGTAAACTCCAGATGCCAAGCGAAG-A-CA-AAGAAACAAGAAAAAGAGAGT 177
|||||||||||||| |||||| |||| |||||| | | |||||||||||||||||||||
Sbjct 121 CCAAAGAAAGTAAAATCCAGAGGCCACGCGAAGAAGAAGAAGAAACAAGAAAAAGAGAGT 180
Query 178 GACAAGAGATTCTTTGATCTCTTCCCTaaaaaaaGAAGAACTTCGGTTGTTACTGTAAGA 237
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 GACAAGAGATTCTTCCATCTCTTCCCTAAAAGAAGAAGAACTTCGGTTGTTACTGTAAGA 240
Query 238 AACCCTGAACAAAACCAACAAAATCTTCATAGGGTTTCTACTTCTTCATCGCTCCTCGAC 297
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 241 AACCCTGAACAAAACCAACAAAACCTTGATAGGGTTTCTACTTCTTCATCCCTCCTCGAC 300
Query 298 CTTAACACGATCCCCGGTGATTCTTCTGACCCACGTAACGAACTTCAAGGGCTTTTATCT 357
|||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||
Sbjct 301 CTTAACACGATCCCCGATGATTCTTCTGACCCACGTAACCCACTTCAAGGGCTTT---CT 357
Query 358 TCTTCTTCATCATCGTTTCTTGG-AGAT--TA-CGAA-AGGAAAACCCCACAAAACGCTT 412
||||| |||||||||| | |||| || | || | || |||||||||||||||||| ||
Sbjct 358 TCTTCATCATCATCGTGT-TTGGGAGCTGATAAC-AAGAGGAAAACCCCACAAAACCCTC 415
Query 413 CTTCTTCTTCAACTTTACTTGCTG-AGTACAACACCGAGATGGCAAACCCACCAAACCCT 471
||||||||||||||||||||| || |||||||||| |||||| |||||||||||||||||
Sbjct 416 CTTCTTCTTCAACTTTACTTG-TGGAGTACAACACGGAGATGACAAACCCACCAAACCCT 474
Query 472 AATTCTGAGACAAGCCTCAAGAGAAAGCATAGTGATAGTGAACCCAAGAAAGCAAAGACT 531
|| |||||||||| || |||| || ||| || | | || | |
Sbjct 475 AAATCTGAGACAA-CC--AAGA-AA-GCAAAG-G-T--TG--C----------------T 507
Query 532 CCTTATTCATGGAAAGGGAGAG-AGGCGCCGGAGTGGCTGGTCAAGATGATGGGAACAAT 590
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 508 CCTTATTCATGGATAGGGA-AGGAGGCGCCGGAGTGGCTGGTCAAGATGATGGGAACAAT 566
Query 591 GCAGGGAAGCGAAGGCCCGAGGCTAATCTATGAGAAGACTCTGACCGAAACAGATGTCAA 650
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||
Sbjct 567 GCAGGGAAGCGAAGGCCCGAGGCTCATCTATCAGAAGACTCTGACCGAAACAGATATCAA 626
Query 651 ACCAG-TCCAGAGCCGTCTCTTAATGCCTTTCAACACCCTAATTCGTAACGACTTTTTGA 709
||||| || |||||||||||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 627 ACCAGATC-AGAGCCGTCTCTTAGTGCCTTTCAACACCCTAATTTGTAACGACTTCTTGA 685
Query 710 CGCCTGTTGAGTTGAGAATCCTACTAGAATTAGAAGATGACACGGATGGAGTTGGAGCGA 769
|||||||||||| |||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 686 CGCCTGTTGAGTCGAGAATCCTACTAGAA---GAAGATGACACCAAGGGAGTTGGAGCGA 742
Query 770 CTCTAGTGGATCCATGGGAGGTAAAGTGGGGTGTGATTTTGAAGAAACGGGAGATGAAGA 829
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 743 CTCTAGTGGATCCTTGGGAGGTAAAGTGGGGTGTGATTTTGAAGAAACGGAAGATGAAGA 802
Query 830 AATATTCAGGGAAAGGAAGCTTGAACTACGCTATAATATGCGGGTGGAACGATATCGTTG 889
|| |||||||||||| || |||||| |||||||| || |||||||||||||| |||||||
Sbjct 803 AAAATTCAGGGAAAGTAACCTTGAATTACGCTATTATCTGCGGGTGGAACGAGATCGTTG 862
Query 890 AGGCTAACGTATTGGAAAAAGACGATGACATCAGTATTTGGTCTTTCAGGCGAGGTAGAA 949
||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||
Sbjct 863 AGGCTAACGTATTGGAAGAAGGCGATGACATCAGTATTTGGTCTTTCAGGCGGGGTAGAA 922
Query 950 ATGGAATCCTTTCCTTTGCCCTTGTTCTTCCTCCTCCTCCTGACATGGCATAG 1002
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 923 ATGGAATCCTTTGCTTTGCCCTTGTTCTTCCTCCTCCTCCGGACATGGCATAG 975
> Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791
Length=1038
Score = 220 bits (119), Expect = 1e-56
Identities = 341/444 (77%), Gaps = 31/444 (7%)
Strand=Plus/Plus
Query 516 CAAGAAAGCAAA-G--ACTCCTTATTCATGGAAA-GG-GAGAGAGGCGCCGGAGTGGCTG 570
|||||||||||| | |||||| |||| ||| || |||||||||||| ||||||||
Sbjct 540 CAAGAAAGCAAAGGTTGCTCCTTTTTCA--CAAACGGCGAGAGAGGCGCCTGAGTGGCTT 597
Query 571 GTCAAGATGATGGGA-ACAATGCAGGGAAG-CGAAGGCCCGAGGCTAATCTATGAGAAGA 628
|||||| ||||| || || ||| | |||| | ||| | | | || |||| ||||||||
Sbjct 598 GTCAAGGTGATGAGAGAC-ATG-AAAGAAGCCAAAGACGCTAAACTGATCTTTGAGAAGA 655
Query 629 CTCTGACCGAAACAGATGTCAAACCAGTC-CAGAGCCGTCTCTTAATGCCTTTCAACACC 687
||||| || || ||||| || ||| | |||| |||||||| |||||||||||||| |
Sbjct 656 CTCTGTTCGTGACTGATGTGAACCCA-ACACAGAACCGTCTCTCAATGCCTTTCAACAAC 714
Query 688 CTAATTCGTAACGACTTT-TTGACGC-CTGTTGAGTTGAGAATCCT--AC-TAGA-AT-T 740
|||| || ||||| ||| ||||| | |||| |||| |||||| | || ||| ||
Sbjct 715 TTAATCCGGAACGA-TTTCTTGAC-CTCTGTGGAGTCCAGAATCATAGACAAAGACATCA 772
Query 741 AGAA-GATGACACGGA-TGGAGTTGGAGCGACTCTAGTGGATCCATGGGAGGTA-AAGTG 797
| || ||| | | || |||||| ||||||| ||| ||||||| | || | | |||||
Sbjct 773 ACAACGATAAGA-AGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTG 830
Query 798 GGGTGTGATTTTGAAGAAACGGGAGATGAAGAAATATTCAGGGAAAGGAAGCTTGAACTA 857
||||||||| ||||||| | ||||||||||||| | ||||| |||||||||| ||| ||
Sbjct 831 GGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGAAAAGGAAGCTGGAATTA 890
Query 858 CGCTATAATATGCGGGTGGAACGATATCGTTGAGGCTAACGTATTGGAAAAA-GACGATG 916
| | | || || |||||||||||||||||||||||||||| |||| ||| | |||
Sbjct 891 CAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTG-AAAGCCGGCGACA 949
Query 917 ACATCAGTATTTGGTC-TTTCAGG 939
|||| ||| ||||||| ||| |||
Sbjct 950 ACATTAGTCTTTGGTCGTTT-AGG 972
> Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1
Length=817
Score = 220 bits (119), Expect = 1e-56
Identities = 341/444 (77%), Gaps = 31/444 (7%)
Strand=Plus/Plus
Query 516 CAAGAAAGCAAA-G--ACTCCTTATT-CATGGAAAGGGAGAGAGGCGCCGGAGTGGCTGG 571
|||||||||||| | |||||| || || ||| || ||||||| |||| |||||||| |
Sbjct 321 CAAGAAAGCAAAGGTTGCTCCTT-TTCCACGGACAGCGAGAGAGACGCCTGAGTGGCTTG 379
Query 572 TCAAGATGATG-G-GAACAATGCAGGGAAGC-GAAGGCCCGAGGCTAATCTATGAGAAGA 628
||||| ||||| | | || ||| | ||||| ||| | | | || |||| ||||||||
Sbjct 380 TCAAGGTGATGAGTG-AC-ATG-AAAGAAGCTAAAGACGCTAAACTGATCTTTGAGAAGA 436
Query 629 CTCTGACCGAAACAGATGTCAAA-CCAGTC-CAGAGCCGTCTCTTAATGCCTTTCAACAC 686
||||| || || ||||| ||| ||| | |||| |||||||| ||||||||||||||
Sbjct 437 CTCTGTTCGTGACTGATGT-AAACCCA-ACACAGAACCGTCTCTCAATGCCTTTCAACAA 494
Query 687 CCTAATTCGTAACGACTTT-TTGACGCCTGTTGAGTTGAGAATCCT--AC-TAGA-AT-T 740
| || | || ||||| ||| |||||| |||| |||| |||||| | || ||| ||
Sbjct 495 CTTACTCCGCAACGA-TTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGACATCA 553
Query 741 AGAA-GATGACACGGA-TGGAGTTGGAGCGACTCTAGTGGATCCATGGGAGGTA-AAGTG 797
| || ||| | | || |||||| ||||||| ||| ||||||| | || | | |||||
Sbjct 554 ACAACGATAAGA-AGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTG 611
Query 798 GGGTGTGATTTTGAAGAAACGGGAGATGAAGAAATATTCAGGGAAAGGAAGCTTGAACTA 857
||||||||| ||||||| | ||||||||||||| | ||||| |||||||||| ||| ||
Sbjct 612 GGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATTA 671
Query 858 CGCTATAATATGCGGGTGGAACGATATCGTTGAGGCTAACGTATTGGAAAAA-GACGATG 916
| | | || || |||||||||||||||||||||||||||| |||| ||| | | |||
Sbjct 672 CAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTG-AAAGATGGCGACA 730
Query 917 ACATCAGTATTTGGTC-TTTCAGG 939
|||| ||| ||||||| ||| |||
Sbjct 731 ACATTAGTCTTTGGTCGTTT-AGG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37246089909
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5