BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G32030.1 Length=1002 Score E Sequences producing significant alignments: (Bits) Value Ahg473386 jgi|Araly1|473386|fgenesh2_kg.1__3340__AT1G32030.1 1227 0.0 Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791 220 1e-56 Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1 220 1e-56 > Ahg473386 jgi|Araly1|473386|fgenesh2_kg.1__3340__AT1G32030.1 Length=975 Score = 1227 bits (664), Expect = 0.0 Identities = 905/1013 (89%), Gaps = 49/1013 (5%) Strand=Plus/Plus Query 1 ATGTCTACGTATTATAATGATCATCTCGCGGCTGCGGAGAAGGACATAAGCTCGAGTAAT 60 ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 ATGCCTACGTATTACAATGATCATCTCGCAGCTGCGGAGAAGGACATAAGCTCGAGTAAA 60 Query 61 TTCTGTAATTTAGTGGATGCTTCCGTTATGTTATACGACGAAGAACACCGTGATCTTCTT 120 |||||||| || ||||||||||| || ||||||||||| ||| |||||||| | |||||| Sbjct 61 TTCTGTAACTTGGTGGATGCTTCGGTCATGTTATACGAAGAAAAACACCGTAAACTTCTT 120 Query 121 CCAAAGAAAGTAAACTCCAGATGCCAAGCGAAG-A-CA-AAGAAACAAGAAAAAGAGAGT 177 |||||||||||||| |||||| |||| |||||| | | ||||||||||||||||||||| Sbjct 121 CCAAAGAAAGTAAAATCCAGAGGCCACGCGAAGAAGAAGAAGAAACAAGAAAAAGAGAGT 180 Query 178 GACAAGAGATTCTTTGATCTCTTCCCTaaaaaaaGAAGAACTTCGGTTGTTACTGTAAGA 237 |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 181 GACAAGAGATTCTTCCATCTCTTCCCTAAAAGAAGAAGAACTTCGGTTGTTACTGTAAGA 240 Query 238 AACCCTGAACAAAACCAACAAAATCTTCATAGGGTTTCTACTTCTTCATCGCTCCTCGAC 297 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct 241 AACCCTGAACAAAACCAACAAAACCTTGATAGGGTTTCTACTTCTTCATCCCTCCTCGAC 300 Query 298 CTTAACACGATCCCCGGTGATTCTTCTGACCCACGTAACGAACTTCAAGGGCTTTTATCT 357 |||||||||||||||| |||||||||||||||||||||| |||||||||||||| || Sbjct 301 CTTAACACGATCCCCGATGATTCTTCTGACCCACGTAACCCACTTCAAGGGCTTT---CT 357 Query 358 TCTTCTTCATCATCGTTTCTTGG-AGAT--TA-CGAA-AGGAAAACCCCACAAAACGCTT 412 ||||| |||||||||| | |||| || | || | || |||||||||||||||||| || Sbjct 358 TCTTCATCATCATCGTGT-TTGGGAGCTGATAAC-AAGAGGAAAACCCCACAAAACCCTC 415 Query 413 CTTCTTCTTCAACTTTACTTGCTG-AGTACAACACCGAGATGGCAAACCCACCAAACCCT 471 ||||||||||||||||||||| || |||||||||| |||||| ||||||||||||||||| Sbjct 416 CTTCTTCTTCAACTTTACTTG-TGGAGTACAACACGGAGATGACAAACCCACCAAACCCT 474 Query 472 AATTCTGAGACAAGCCTCAAGAGAAAGCATAGTGATAGTGAACCCAAGAAAGCAAAGACT 531 || |||||||||| || |||| || ||| || | | || | | Sbjct 475 AAATCTGAGACAA-CC--AAGA-AA-GCAAAG-G-T--TG--C----------------T 507 Query 532 CCTTATTCATGGAAAGGGAGAG-AGGCGCCGGAGTGGCTGGTCAAGATGATGGGAACAAT 590 ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 508 CCTTATTCATGGATAGGGA-AGGAGGCGCCGGAGTGGCTGGTCAAGATGATGGGAACAAT 566 Query 591 GCAGGGAAGCGAAGGCCCGAGGCTAATCTATGAGAAGACTCTGACCGAAACAGATGTCAA 650 |||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| Sbjct 567 GCAGGGAAGCGAAGGCCCGAGGCTCATCTATCAGAAGACTCTGACCGAAACAGATATCAA 626 Query 651 ACCAG-TCCAGAGCCGTCTCTTAATGCCTTTCAACACCCTAATTCGTAACGACTTTTTGA 709 ||||| || |||||||||||||| |||||||||||||||||||| |||||||||| |||| Sbjct 627 ACCAGATC-AGAGCCGTCTCTTAGTGCCTTTCAACACCCTAATTTGTAACGACTTCTTGA 685 Query 710 CGCCTGTTGAGTTGAGAATCCTACTAGAATTAGAAGATGACACGGATGGAGTTGGAGCGA 769 |||||||||||| |||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 686 CGCCTGTTGAGTCGAGAATCCTACTAGAA---GAAGATGACACCAAGGGAGTTGGAGCGA 742 Query 770 CTCTAGTGGATCCATGGGAGGTAAAGTGGGGTGTGATTTTGAAGAAACGGGAGATGAAGA 829 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 743 CTCTAGTGGATCCTTGGGAGGTAAAGTGGGGTGTGATTTTGAAGAAACGGAAGATGAAGA 802 Query 830 AATATTCAGGGAAAGGAAGCTTGAACTACGCTATAATATGCGGGTGGAACGATATCGTTG 889 || |||||||||||| || |||||| |||||||| || |||||||||||||| ||||||| Sbjct 803 AAAATTCAGGGAAAGTAACCTTGAATTACGCTATTATCTGCGGGTGGAACGAGATCGTTG 862 Query 890 AGGCTAACGTATTGGAAAAAGACGATGACATCAGTATTTGGTCTTTCAGGCGAGGTAGAA 949 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| Sbjct 863 AGGCTAACGTATTGGAAGAAGGCGATGACATCAGTATTTGGTCTTTCAGGCGGGGTAGAA 922 Query 950 ATGGAATCCTTTCCTTTGCCCTTGTTCTTCCTCCTCCTCCTGACATGGCATAG 1002 |||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 923 ATGGAATCCTTTGCTTTGCCCTTGTTCTTCCTCCTCCTCCGGACATGGCATAG 975 > Ahg905663 jgi|Araly1|905663|Al_scaffold_0003_2791 Length=1038 Score = 220 bits (119), Expect = 1e-56 Identities = 341/444 (77%), Gaps = 31/444 (7%) Strand=Plus/Plus Query 516 CAAGAAAGCAAA-G--ACTCCTTATTCATGGAAA-GG-GAGAGAGGCGCCGGAGTGGCTG 570 |||||||||||| | |||||| |||| ||| || |||||||||||| |||||||| Sbjct 540 CAAGAAAGCAAAGGTTGCTCCTTTTTCA--CAAACGGCGAGAGAGGCGCCTGAGTGGCTT 597 Query 571 GTCAAGATGATGGGA-ACAATGCAGGGAAG-CGAAGGCCCGAGGCTAATCTATGAGAAGA 628 |||||| ||||| || || ||| | |||| | ||| | | | || |||| |||||||| Sbjct 598 GTCAAGGTGATGAGAGAC-ATG-AAAGAAGCCAAAGACGCTAAACTGATCTTTGAGAAGA 655 Query 629 CTCTGACCGAAACAGATGTCAAACCAGTC-CAGAGCCGTCTCTTAATGCCTTTCAACACC 687 ||||| || || ||||| || ||| | |||| |||||||| |||||||||||||| | Sbjct 656 CTCTGTTCGTGACTGATGTGAACCCA-ACACAGAACCGTCTCTCAATGCCTTTCAACAAC 714 Query 688 CTAATTCGTAACGACTTT-TTGACGC-CTGTTGAGTTGAGAATCCT--AC-TAGA-AT-T 740 |||| || ||||| ||| ||||| | |||| |||| |||||| | || ||| || Sbjct 715 TTAATCCGGAACGA-TTTCTTGAC-CTCTGTGGAGTCCAGAATCATAGACAAAGACATCA 772 Query 741 AGAA-GATGACACGGA-TGGAGTTGGAGCGACTCTAGTGGATCCATGGGAGGTA-AAGTG 797 | || ||| | | || |||||| ||||||| ||| ||||||| | || | | ||||| Sbjct 773 ACAACGATAAGA-AGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTG 830 Query 798 GGGTGTGATTTTGAAGAAACGGGAGATGAAGAAATATTCAGGGAAAGGAAGCTTGAACTA 857 ||||||||| ||||||| | ||||||||||||| | ||||| |||||||||| ||| || Sbjct 831 GGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGAAAAGGAAGCTGGAATTA 890 Query 858 CGCTATAATATGCGGGTGGAACGATATCGTTGAGGCTAACGTATTGGAAAAA-GACGATG 916 | | | || || |||||||||||||||||||||||||||| |||| ||| | ||| Sbjct 891 CAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTG-AAAGCCGGCGACA 949 Query 917 ACATCAGTATTTGGTC-TTTCAGG 939 |||| ||| ||||||| ||| ||| Sbjct 950 ACATTAGTCTTTGGTCGTTT-AGG 972 > Ahg480001 jgi|Araly1|480001|fgenesh2_kg.3__2702__AT3G24850.1 Length=817 Score = 220 bits (119), Expect = 1e-56 Identities = 341/444 (77%), Gaps = 31/444 (7%) Strand=Plus/Plus Query 516 CAAGAAAGCAAA-G--ACTCCTTATT-CATGGAAAGGGAGAGAGGCGCCGGAGTGGCTGG 571 |||||||||||| | |||||| || || ||| || ||||||| |||| |||||||| | Sbjct 321 CAAGAAAGCAAAGGTTGCTCCTT-TTCCACGGACAGCGAGAGAGACGCCTGAGTGGCTTG 379 Query 572 TCAAGATGATG-G-GAACAATGCAGGGAAGC-GAAGGCCCGAGGCTAATCTATGAGAAGA 628 ||||| ||||| | | || ||| | ||||| ||| | | | || |||| |||||||| Sbjct 380 TCAAGGTGATGAGTG-AC-ATG-AAAGAAGCTAAAGACGCTAAACTGATCTTTGAGAAGA 436 Query 629 CTCTGACCGAAACAGATGTCAAA-CCAGTC-CAGAGCCGTCTCTTAATGCCTTTCAACAC 686 ||||| || || ||||| ||| ||| | |||| |||||||| |||||||||||||| Sbjct 437 CTCTGTTCGTGACTGATGT-AAACCCA-ACACAGAACCGTCTCTCAATGCCTTTCAACAA 494 Query 687 CCTAATTCGTAACGACTTT-TTGACGCCTGTTGAGTTGAGAATCCT--AC-TAGA-AT-T 740 | || | || ||||| ||| |||||| |||| |||| |||||| | || ||| || Sbjct 495 CTTACTCCGCAACGA-TTTCTTGACGTCTGTGGAGTCCAGAATCATAGACAAAGACATCA 553 Query 741 AGAA-GATGACACGGA-TGGAGTTGGAGCGACTCTAGTGGATCCATGGGAGGTA-AAGTG 797 | || ||| | | || |||||| ||||||| ||| ||||||| | || | | ||||| Sbjct 554 ACAACGATAAGA-AGATTGGAGTGGGAGCGATTCTCGTGGATCAACGGTCTG-AGAAGTG 611 Query 798 GGGTGTGATTTTGAAGAAACGGGAGATGAAGAAATATTCAGGGAAAGGAAGCTTGAACTA 857 ||||||||| ||||||| | ||||||||||||| | ||||| |||||||||| ||| || Sbjct 612 GGGTGTGATGTTGAAGAGATGGGAGATGAAGAAGGAATCAGGTAAAGGAAGCTGGAATTA 671 Query 858 CGCTATAATATGCGGGTGGAACGATATCGTTGAGGCTAACGTATTGGAAAAA-GACGATG 916 | | | || || |||||||||||||||||||||||||||| |||| ||| | | ||| Sbjct 672 CAATTTGATTTGTGGGTGGAACGATATCGTTGAGGCTAACGGATTG-AAAGATGGCGACA 730 Query 917 ACATCAGTATTTGGTC-TTTCAGG 939 |||| ||| ||||||| ||| ||| Sbjct 731 ACATTAGTCTTTGGTCGTTT-AGG 753 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37246089909 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5