BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32050.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473387 jgi|Araly1|473387|fgenesh2_kg.1__3341__AT1G32050.1 1581 0.0
> Ahg473387 jgi|Araly1|473387|fgenesh2_kg.1__3341__AT1G32050.1
Length=1156
Score = 1581 bits (856), Expect = 0.0
Identities = 957/1005 (95%), Gaps = 9/1005 (1%)
Strand=Plus/Plus
Query 1 TGGGAGAGAAAAAGAAG---AA--AAAGAGAGTCCAACCATATCAGTTTGCTTTCACAGT 55
||||||||||||||||| || ||| |||||||||||| |||||||||||||||||||
Sbjct 1 TGGGAGAGAAAAAGAAGAAAAACTAAAAAGAGTCCAACCACATCAGTTTGCTTTCACAGT 60
Query 56 GGAGTCGGTGCTCTCtttttttttcttctctctttcttttc-ACCTCTCGCCGGATCCCG 114
|||||||||| ||| | |||||||||||||||||| ||| ||||||||||||||| ||
Sbjct 61 CGAGTCGGTGCGCTC-TCTTTTTTCTTCTCTCTTTC--TTCAACCTCTCGCCGGATCTCG 117
Query 115 GCGATCTTATAGGAGGCAAATCTATCAGTATCGTTATTCTAGGATCTCTAACAAACAATG 174
|||||||||| |||| |||||||||||||||||| | ||||||||||||||| ||| |||
Sbjct 118 GCGATCTTATCGGAGACAAATCTATCAGTATCGTGAATCTAGGATCTCTAACCAACGATG 177
Query 175 AATCGCCACCACGATCCCAATCCTTTCGATGAGGACGAAGAAATCGTCAATCCTTTTTCG 234
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 178 AATCGCCACCACGATCCCAATCCTTTCGATGAGGAAGAAGAAATCGTCAATCCTTTTTCG 237
Query 235 AAAGGTGGTGGAAGGGTTCCTGCTGCATCTAGGCCAGTTGAATATGGTCAAAGCCTTGAT 294
|||||||||||||| ||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct 238 AAAGGTGGTGGAAGAGTTCCTGCTGCATCTAGACCAGTTGAATTTGGCCAAAGCCTTGAT 297
Query 295 GCTACTGTTGATATTCCATTGGATAATATGAATGACTCTTCACAGAAACAGAGAAAGCTT 354
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 298 GCTACTGTTGATATTCCATTGGATAATATGAATGACTCGTCACAGAAACAGAGGAAGCTT 357
Query 355 GCTGACTGGGAAGCTGAGCTCAGGAAGAAAGAAATGGATATAAAGCGAAGAGAGGAAGCT 414
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 358 GCTGACTGGGAAGCTGAGCTTAGGAAGAAAGAAATGGATATTAAGCGAAGAGAGGATGCT 417
Query 415 ATTGCTAAATTTGGTGTGCAGATAGATGATAAAAACTGGCCACCGTTTTTCCCAATCATA 474
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 418 ATTGCTAAATCTGGTGTGCAGATAGATGATAAAAACTGGCCACCGTTTTTCCCCATCATA 477
Query 475 CACCATGACATTGCTAAAGAGATACCAGTTCATGCACAAAAGCTGCAGTATCTGGCTTTC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CACCATGACATTGCTAAAGAGATACCAGTTCATGCACAAAAGCTGCAGTATCTGGCTTTC 537
Query 535 GCTAGTTGGTTAGGTATCGTTCTGTGTCTGGTATTCAATGTCATTGCAACGATGGTCTGC 594
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCTAGCTGGTTAGGTATAGTTCTGTGTCTGGTATTCAATGTCATTGCAACGATGGTCTGC 597
Query 595 TGGATTAAAGGCGGAGGTGTTAAAATCTTTTTCCTGGCCACAATATATGCATTGATCGGA 654
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 598 TGGATTAAAGGCGGAGGTGTTAAAATCTTCTTCCTGGCCACAATATATGCGTTGATCGGA 657
Query 655 TGTCCACTCTCTTATGTACTATGGTACAGGCCACTCTACCGAGCCATGAGGACTGACAGT 714
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TGTCCACTTTCTTACGTACTATGGTACAGGCCACTCTACCGAGCCATGAGGACTGACAGC 717
Query 715 GCTTTGAAGTTTGGTTGGTTTTTCTTCACCTACTTGATTCACATTGGCTTCTGCATCGTT 774
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 718 GCTTTGAAGTTTGGTTGGTTTTTCTTCACCTACCTGATTCACATTGGCTTCTGCATTGTT 777
Query 775 GCTGCCATCGCCCCTCCAATCTTTTTCCATGGAAAATCATTAACGGGTGTGCTTGCAGCA 834
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GCCGCCATTGCCCCTCCGATCTTTTTCCATGGAAAATCATTAACGGGTGTGCTTGCAGCA 837
Query 835 ATTGATGTCATCTCAGACAGTTTATTAGCTGGGATCTTCTACTTTATCGGATTCGGTCTC 894
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 ATTGATGTCATCTCAGACAGTTTATTAGCCGGGATCTTCTACTTTATCGGATTCGGTCTC 897
Query 895 TTCTGCTTGGAGTCACTGCTGAGTCTATGGGTTCTTCAGAAAATTTACCTCTACTTTAGG 954
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 TTCTGCTTGGAGTCACTTCTGAGTCTATGGGTTCTTCAGAAAATTTACCTCTACTTTAGG 957
Query 955 GGAAACAAGTGAAAAGGAGATAAAGAGGAAGATGATGGTAATTTT 999
|||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 958 GGAAACAAGTGAAAAGGAGATAGAGAGGAAGATGATGGTAATTTT 1002
Score = 122 bits (66), Expect = 4e-27
Identities = 81/88 (92%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 1122 TTGTTCGGCCATTTCTTTATG-TTTTTTACTCTGTTCTTCTCTGGTCTGTAATATACCAA 1180
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TTGTTCGGCCATTTCTATAGGTTTTTTTACTCTGTTCTTCTCTGGTCTGTAATATACCAA 1107
Query 1181 TATCGTCTCTTAGCTTTTGGGAtttttt 1208
|||||||||| | | ||||||| |||||
Sbjct 1108 TATCGTCTCTGAACGTTTGGGAGTTTTT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5