BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32070.2
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473390 jgi|Araly1|473390|fgenesh2_kg.1__3344__AT1G32070.2 1358 0.0
> Ahg473390 jgi|Araly1|473390|fgenesh2_kg.1__3344__AT1G32070.2
Length=881
Score = 1358 bits (735), Expect = 0.0
Identities = 838/887 (94%), Gaps = 10/887 (1%)
Strand=Plus/Plus
Query 8 ATTTCTTCTACTCTCAAGTCTCAACCACATAACCAATAAAAAATGCTACTAATCCCAATT 67
||||||||||||||||| ||||||||||| |||| | |||||||||||||||| ||||||
Sbjct 1 ATTTCTTCTACTCTCAACTCTCAACCACAAAACC-A-AAAAAATGCTACTAATTCCAATT 58
Query 68 TCTTCTTCTTCGTCTTCGTC-T-AT-TAGCCCTCCTCCTAATTCATATCCATCGAATCAT 124
||||||||||| ||||| || | | || || ||||||||| |||||| |||||||||||
Sbjct 59 TCTTCTTCTTCTTCTTCCTCTTCCTCTATCCTTCCTCCTAACTCATATTCATCGAATCAT 118
Query 125 CACTCTCTGTTTTTCTCCAATCTCACATTCCCAATTCAACATGGAAGTAGAAAGTTGAAG 184
|||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||
Sbjct 119 CACTCTCTGTTTTTCTCCAATCTCACATACCCGATTCCACATGGAAGCAGAAAGTTGAAG 178
Query 185 ACTTTGCGACTCAGAGCCAATTTCTGGGAGTCAATCCGATCTGGGTTTGTGAAGAATAAT 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 ACTTTGCGACTCAGAGCCAATTTCTGGGAGTCAATTCGATCTGGGTTTGTGAAGAATAAT 238
Query 245 AATAGTACGCAACTTGTGGAACCACCTTCTATAGTCAATGATGAAGAAGAAGAGACTGAG 304
|||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||
Sbjct 239 AATAGTACCCAACTTGTTGAACCACCTTCTATAGT---TGAAGAAGAAGAAGAGACTGAA 295
Query 305 CCATTGTTACCTGTGGAATTTACTTTAGTTGAGAGAAATCTTGAAGATGGTTTAGTTGAA 364
||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 296 CCATTATTGCCTGTGGAATTTGCTTTAGTTGAGAGAAATCTTGAAGATGGTTTAATTGAA 355
Query 365 GAGATCATATTTTCTTCTGGTGGTGAGATTGATGTTTATGATCTTCAAGGTCTTTGTGAT 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAGATCATATTTTCTTCTGGTGGTGAGATTGATGTTTATGATCTTCAAGGTCTTTGTGAC 415
Query 425 AAGGTGGGATGGCCAAGGAGACCGTTAGTGAAACTAGCTGCTGCTTTGAAGAATAGTTAT 484
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 416 AAGGTGGGATGGCCACGGAGACCGTTAGTGAAACTAGCTGCAGCTTTGAAGAATAGTTAT 475
Query 485 ATGGTTGCTACTTTGCATTCTGTAATGAAGTCATCATCAGATTCAGATTCATCAGAAGGC 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 ATGGTTGCTACTTTGCATTCTGTAATGAAGTCATCATCAGATTCAGATTCATCAGAAGGC 535
Query 545 GGGGATGGGGAGAAGCAGCAGGAGAAGAAGCTTATTGGTATGGCACGTGCGACGTCGGAT 604
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 536 GGTAATGGGGAGAAGCAGCAGGAGAAGAAGCTTATTGGTATGGCACGTGCAACGTCGGAT 595
Query 605 CATGCCTTTAATGCTACAATTTGGGATGTTCTTGTTGATCCTGAATATCAGGGTCAAGGG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CATGCCTTTAATGCTACAATTTGGGATGTTCTTGTTGATCCTGAATATCAGGGTCAAGGG 655
Query 665 CTAGGTAAAGCTCTTGTTGAAAAACTTGTAAGGGCTCTTCTTCAAAGAGATATTGGTAAC 724
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 656 CTAGGTAAAGCGCTTGTTGAAAAACTTGTAAGGGCTCTTCTTCAGAGAGATATTGGTAAT 715
Query 725 ATATCTCTGTTTGCAGATAGTCAAGTTGTGGATTTCTATCAGAACTTGGGGTTTGAGGCT 784
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATATCTCTATTTGCAGATAGTCAAGTTGTGGATTTCTATCAGAACTTGGGGTTTGAGGCT 775
Query 785 GATCCAGAAGGCATCAAAGGCATGTTTTGGTACCCAAAGTAGT-ACTTGGTGATTGCAAG 843
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 776 GATCCAGAAGGCATCAAAGGCATGTTTTGGTACCCAAAGTAGTTACTTGGTGATTACAAG 835
Query 844 AAAATGGGATTGTTACTTGTATGTATAATTTCTTTGCTTTCTTATAT 890
| ||||||||| ||| |||| |||||| ||||| |||||||||||||
Sbjct 836 AGAATGGGATTATTATTTGTTTGTATA-TTTCTGTGCTTTCTTATAT 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5