BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32090.1
Length=2730
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473392 jgi|Araly1|473392|fgenesh2_kg.1__3346__AT1G32090.1 4204 0.0
> Ahg473392 jgi|Araly1|473392|fgenesh2_kg.1__3346__AT1G32090.1
Length=2682
Score = 4204 bits (2276), Expect = 0.0
Identities = 2536/2659 (95%), Gaps = 27/2659 (1%)
Strand=Plus/Plus
Query 84 ATCAACAATGGCGACTCTACAAGACATAGGAGTCTCAGCTCTCATCAACCTCTTCGGTGC 143
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 30 ATCATCAATGGCGACTCTACAAGACATAGGAGTCTCAGCTCTCTTCAACCTCTTCGGTGC 89
Query 144 TTTCTTATTTCTTATAGCATTCGCTGTCTTAAGAATCCAACCCATCAACGACAGAGTTTA 203
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 90 TTTCTTATTTCTCATCGCATTCGCTGTCTTAAGAATCCAACCCATCAACGACAGAGTCTA 149
Query 204 CTTCCCCAAATGGTATCTCACCGGAGAAAGAAACAGTCCTCGGCGCTCCGACAGAACTCT 263
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 150 CTTCCCTAAATGGTACCTCACCGGAGAAAGAAACAGTCCCCGGCGCTCCGACAGAACTCT 209
Query 264 CGTCGGAAAATTCGTAAACCTCAACTACAAGACTTACTTCACGTTCCTTAATTGGATGCC 323
||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 210 CGTCGGAAAATTCGTGAACCTTAACTACAAAACTTACTTCACTTTCCTTAATTGGATGCC 269
Query 324 TCAAGCTATGAAAATGAGTGAATCAGAGATTATTCGTCATGCTGGTCTTGATTCTGCTAT 383
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TCAAGCCATGAAAATGAGTGAATCAGAGATTATTCGTCATGCTGGTCTTGATTCTGCTAT 329
Query 384 CTTCCTTAGGATTTACACTCTCGGCTTGAAGATCTTTGCACCAGTGATGGTATTAGCGCT 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 330 CTTCCTTAGGATTTACACTCTCGGCTTGAAGATCTTTGCACCAGTGATGGTATTAGCTCT 389
Query 444 TGTTGTTCTTGTTCCAGTAAATGTATCAAGTGGAACACTTTTCTTCTTGAAGAAGGAACT 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 390 TGTTGTTCTTGTTCCAGTAAATGTATCAAGTGGAACACTTTTCTTCTTGAAGAAAGAACT 449
Query 504 TGTGGTCAGCAATATCGATAAGCTCTCTATATCCAATGTTCAGCCCAAATCTTCAAAGTT 563
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 450 TGTGGTCAGCAATATTGATAAGCTCTCTATATCAAATGTTCAGCCCAAATCTTCAAAGTT 509
Query 564 CTTCTTTCATATTGCAGTAGAGTACATTTTCACGTTCTGGGCATGTTTCATGCTCTACAG 623
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CTTCTTTCACATTGGAGTAGAGTACATTTTCACGTTCTGGGCATGTTTCATGCTCTACAG 569
Query 624 AGAATACAATAATGTCGCTATTATGCGTCTGCAGTATTTAGCTTCACAGCGTAGGCGTCC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 AGAATACAATAATGTCGCTATTATGCGTCTGCAGTATTTAGCTTCACAGCGTAGGCGTCC 629
Query 684 AGAACAGTTCACTGTTGTTGTTAGAAACGTCCCTGACATGCCTGGTCACTCGGTTCCCGA 743
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 630 CGAACAGTTCACTGTTGTTGTTAGAAACGTTCCTGACATGCCCGGGCACTCGGTTCCCGA 689
Query 744 TACCGTTGATCAGTTCTTTAAGACGAATCACCCTGAGCATTACCTCTGTCATCAAGCTGT 803
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 690 TACCGTGGATCAGTTCTTCAAGACGAATCACCCTGAGCATTATCTCTGTCATCAAGCTGT 749
Query 804 TTATAATGCGAACACTTACGCAAAGCTGGTGAAGCAAAGAGCGAAGTTGCAACGTTGGTT 863
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 750 TTATAATGCGAACACGTACGCAAAGCTGGTGAAGCAAAGAGAGAAGTTGCAACGTTGGTT 809
Query 864 TGACTATTATGTGCTGAAGCATCAACGTAATCCGCATAAGCAGCCTACTTGCAGAACAGG 923
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 810 TGATTATTATGTGCTGAAGCATCAACGTAATCCGCATAAGCAGCCTACATGCAGAACAGG 869
Query 924 TTTTCTTGGTCTATGGGGTAAGAGGGTTGATTCCATTGAGTACTACAAGCAACAAATCAA 983
|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 870 GTTTCTTGGTCTATGGGGTAAGAAGGTTGATTCCATTGAGTACTACAAACAACAAATCAA 929
Query 984 GGAGTTTGACCACAATATGTCTTTGGAGCGTCAAAAAGTTCTCAAGGACTCCAAGCTAAT 1043
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 930 GGAGTTTGACCACAATATGTCTTTGGAGCGCCAAAAAGTTCTCAAGGACTCCAAACTAAT 989
Query 1044 GCTTCCTGTTGCATTTGTGTCGTTTGATTCACGATGGGGTGCTGCTGTTTGTGCACAGAC 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 GCTTCCTGTTGCATTTGTGTCGTTTGATTCACGATGGGGTGCTGCTGTTTGTGCACAGAC 1049
Query 1104 GCAGCAGAGCAAGAATCCGACATTATGGTTAACGAGTAGTGCTCCAGAGCCTCGTGATAT 1163
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1050 GCAGCAGAGCAAGAATCCGACATTATGGTTAACGAGTAGTGCTCCAGAGCCTCGGGATAT 1109
Query 1164 CTATTGGCAAAACCTTGCTATACCTTTTATCTCTTTAACCATCCGGAAACTCGTAATTGG 1223
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1110 TTATTGGCAAAACCTTGCTATACCTTTTATCTCTTTGACCATCCGGAAACTCGTAATTGG 1169
Query 1224 TGTCTCAGTCTTTGCCTTGGTCTTTTTCTACATGATTCCTATCGCCTTCGTGCAATCTCT 1283
||||||||||||||||||||||||||||||||||||||| || || || || ||||||||
Sbjct 1170 TGTCTCAGTCTTTGCCTTGGTCTTTTTCTACATGATTCCAATTGCTTTTGTCCAATCTCT 1229
Query 1284 TGCCAATTTAGAAGGTCTTGACAGAGTTGCACCTTTCCTCAGACCTGTTACTAGATTGGA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TGCCAATTTAGAAGGTCTTGACAGAGTTGCACCTTTCCTCAGACCTGTTACTAGATTGGA 1289
Query 1344 TTTCATCAAGTCATTCTTACAGGGTTTCCTCCCCGGTCTTGCGCTGAAAATTTTCTTGTG 1403
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1290 TTTCATCAAGTCATTCTTACAGGGTTTTCTCCCCGGTCTTGCTCTGAAGATTTTCTTGTG 1349
Query 1404 GATTCTCCCTACG-GTTCTGCTAATTATGTCGAAGATTGAGGGATACATCGCTTTATCAA 1462
||||||||| | | |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1350 GATTCTCCCGA-GTGTTCTGCTGATTATGTCGAAGATTGAGGGATACATCGCTTTATCGA 1408
Query 1463 CCCTTGAGCGTAGAGCAGCAGCAAAGTACTATTACTTCATGTTAGTTAATGTGTTCTTGG 1522
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 1409 CCCTTGAGCGTAGAGCAGCCGCAAAGTACTATTACTTCATGTTAGTAAATGTATTCTTGG 1468
Query 1523 GAAGTATCATTGCTGGAACCGCGTTTGAGCAGCTGCACTCTTTCCTTCACCAATCACCAT 1582
||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1469 GAAGTATCATTGCCGGAACCGCGTTTGAGCAGTTGGACTCTTTCCTTCACCAATCACCAA 1528
Query 1583 CTCAGATTCCTCGAACCATTGGGGTCTCCATACCGATGAAAGCTACATTCTTTATCACAT 1642
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1529 CTCAGATTCCTCGAACCATTGGGGTCTCAATACCGATGAAAGCTACGTTCTTTATCACAT 1588
Query 1643 ACATAATGGTTGACGGATGGGCTGGGATTGCAGGTGAGATTCTCCGGTTAAAGCCCCTCG 1702
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 ATATAATGGTTGACGGGTGGGCTGGGATTGCAGGTGAGATTCTCCGGTTAAAGCCCCTCG 1648
Query 1703 TGATTTTCCACTTGAAGAACATGTTTATTGTGAAGACTGAAGAAGATAGAGTGAGAGCAA 1762
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1649 TGATTTTCCACTTGAAGAACATGTTTCTTGTGAAGACTGAAGAAGATAGAGTGAGAGCAA 1708
Query 1763 TGGACCCTGGTTTTGTCGATTTCAAGGAGACTATCCCATCTCTCCAGCTCTACTTCCTCT 1822
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1709 TGGACCCTGGCTTTGTCGATTTCAAGGAGACTCTCCCATCTCTCCAGCTCTACTTCCTCT 1768
Query 1823 TGGGAATTGTCTACACTGCTGTTACTCCCATTCTTCTTCCTTTCATTCT-CATATTCTTT 1881
|||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1769 TGGGAATTGTCTACACCGCTGTTACTCCCATTCTTCTTCCCTTCAT-CTGCATATTCTTT 1827
Query 1882 GCCTTTGCTTACTTGGTCTATCGCCATCAGATAATCAATGTTTACAACCAACAATACGAG 1941
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 GCCTTTGCTTACTTCGTCTATCGCCATCAGATAATCAATGTTTACAACCAACAATACGAG 1887
Query 1942 AGTTGTGGAGCGTTTTGGCCGCACGTTCATGGCCGGATAATCGCAAGCTTGTTGATATCT 2001
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1888 AGTTGTGGAGCGTTTTGGCCACACGTTCATGGCCGGATAATCGCGAGCTTGTTGATATCT 1947
Query 2002 CAGCTTCTGCTAATGGGACTTTTGGCTTCTAAAAAGGCAGCTGACTCAACTCCATTGCTT 2061
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1948 CAGCTTCTGCTTATGGGACTTTTGGCTTCTAAAAAAGCAGCTGACTCAACGCCATTGCTT 2007
Query 2062 ATCATCTTACCCATTCTCACACTTTCTTTCCACAAGTATTGCAAACACCGCTTCGAACCT 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 ATCATCTTACCCATTCTCACACTTTCTTTCCACAAGTATTGCAAACACCGCTTCGAACCT 2067
Query 2122 GCCTTTCGACAATACCCTCTTGAGGAAGCAATGGCGAAAGACAAGTTAGAGAAGGAAACA 2181
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2068 GCCTTCCGACAATACCCTCTTGAGGAAGCAATGGCGAAAGACAAGTTGGAGAAGGAAACA 2127
Query 2182 GAACCGGAGTTGAACATGAAAGCAGATCTTGCAGATGCTTACTTGCACCCAATTTTCCAT 2241
||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 2128 GAACCGGAGTTGAACATGAAAGCGGATCTTGCAGATGCTTACTTGCATCCTATTTTCCAT 2187
Query 2242 TCATTCGAGAAAGAAGTAGAATTatcatcatcatcatcatcaGAAAAAGAGACTCACCAA 2301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2188 TCATTCGAGAAAGAAGTAGAATTATCATCATCATCATCATCAGAAAAAGAGACTCACCAA 2247
Query 2302 GAAGAGACACCAGAGGTAAGAGTGGACAAACATGAAACACAGTCGTCTAGTCCTGTGACA 2361
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2248 GAAGAGACACCAGAGGTAAGAGTCGACAAACATGAAACACAGTCGTCTAGTCCTGTGACC 2307
Query 2362 GAGCTCGGTACTTCTTCCCATCACCATCATGTCTACAATTCCACTTCCCCTTCTTCTCAC 2421
||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2308 GAGCTCGATACTCCTTCCCATCACCATTATGTCTACAATTCCACTTCCCCTTCTTCTCAC 2367
Query 2422 TACGCTTCAGCTTATGAGCAGTCATCGTCTCAGTATGAATATCACTACAATACTCATCAG 2481
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2368 TACACTTCAGCTTATGAGCAGTCATCATCTCAGTATGAATATCACTACAATACTCATCAG 2427
Query 2482 TACGAGGAGCATGAGTACCGTTACAATTGATCTCTAGACAG-AAGAAAA-ATATGTAATC 2539
|||||||| ||||||||||||||||| ||||||||||| | || |||| | | | | |
Sbjct 2428 TACGAGGATCATGAGTACCGTTACAAGTGATCTCTAGATGGCAAAAAAAGAAA-G-ACTG 2485
Query 2540 TCTTATGAGTGTCATAACTAAAGGT--T-TC-TTTTGGTCTAGGTTTAGGTTATTTGTTA 2595
||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||
Sbjct 2486 TCTTATGAGTGTCATAACTAAAGCTCATGTCCTTTTGGTCTAGGTTTAGGTTATTTGTTA 2545
Query 2596 GCTGACTTTGG-TTTCG----G-TTTTAAAGGTTAGGAAATTGGTGTTAGTGTCATT-CA 2648
||||||||||| ||| | | |||| | ||||||||||||||||||||||||||| ||
Sbjct 2546 GCTGACTTTGGATTTGGTTTTGGTTTTGA-GGTTAGGAAATTGGTGTTAGTGTCATTTCA 2604
Query 2649 CTTGTATGAAAATATATTCGAAGATTTAATTTATTGTCATCT--TT-C---AAGCCTATT 2702
|||||||| ||||||||||||||||| ||||||||||||||| || | |||||| ||
Sbjct 2605 CTTGTATGGAAATATATTCGAAGATT-AATTTATTGTCATCTGGTTTCTTCAAGCCTTTT 2663
Query 2703 GTAATTGTAAAATTTGGTT 2721
|||||||||||||||||||
Sbjct 2664 GTAATTGTAAAATTTGGTT 2682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102996022480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5