BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32100.1
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473393 jgi|Araly1|473393|fgenesh2_kg.1__3347__AT1G32100.1 1548 0.0
> Ahg473393 jgi|Araly1|473393|fgenesh2_kg.1__3347__AT1G32100.1
Length=1058
Score = 1548 bits (838), Expect = 0.0
Identities = 1011/1089 (93%), Gaps = 33/1089 (3%)
Strand=Plus/Plus
Query 37 AAAAAATGGGAGAGAGCAAACGCACCGAGAAAACGCGCGTTTTGGTGGTTGGAGCGACTG 96
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AAAAAATGGGAGAGGGCAAACGCACCGAGAAAACGCGCGTTTTGGTGGTGGGAGCGACTG 60
Query 97 GATACATAGGGAAGAGGATAGTAAGGGCGTGTTTGGCTGAAGGTCACGAGACTTACGTTT 156
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GGTACATAGGGAAGAGGATAGTAAGGGCGTGTTTGGCTGAAGGTCACGAGACTTATGTTT 120
Query 157 TGCAGAGGCCAGAGATTGGTCTCGAAATCGAGAAAGTCCAACTCTTTCTTTCTTTCAAGA 216
||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||
Sbjct 121 TGCAGCGGCCAGAGATTGGTCTCGATGTCGAGAAAGTCCAACTCCTTCTCTCTTTCAAGA 180
Query 217 AACTCGGCGCACGTATCGTTGAAGGTTCTTTCTCCGACCATCAAAGCCTCGTATCCGCCG 276
||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 181 AACTCGGCGCACGAATCGTTGAAGGTTCTTTCTCCGACCACCAAAGCCTCGTCTCTGCCG 240
Query 277 TGAAACTTGTTGACGTCGTTGTCTCCGCCATGTCCGGTGTTCACTTCCGTAGCCATAACA 336
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 TGAAACTTGTTGACGTCGTTGTCTCCGCCATGTCCGGCGTTCACTTCCGTAGCCATAACA 300
Query 337 TTCTAGTCCAGCTCAAGCTCGTCGAAGCTATCAAAGAGGCTGGTAACGTAAAGCGGTTTT 396
| || || ||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 301 TCCTTGTTCAGCTCAAGCTTGTCGAAGCCATCAAAGAGGCTGGTAACGTCAAGCGGTTTT 360
Query 397 TACCATCTGAATTTGGTATGGATCCACCACGTATGGGACATGCGCTACCGCCCGGAAGAG 456
|||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 361 TACCATCTGAATTTGGTATGGATCCACCGCGTATGGGACATGCGCTACCACCAGGAAGAG 420
Query 457 AAACCTTTGACCAGAAAATGGAAGTGCGTCAGGCGATAGAGGCTGCCGGAATTCCTTACA 516
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 AAACCTTCGACCAGAAAATGGAAGTGCGTCAGGCGATAGAGGCTGCCGGAATTCCATACA 480
Query 517 CTTACGTTGTGGGTGCTTGCTTTGCCGCCTACTTCGCCGGAAACTTGTCTCAGATGGTAA 576
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 CTTACATTGTGGGTGCTTGCTTTGCCGCCTACTTCGCCGGAAACTTATCTCAGATGGTAA 540
Query 577 CTTTACTTCCTCCGAAAGAAAAAGTTAATATTTATGGTGATGGAAATGTAAAAGTGGTGT 636
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 541 CTTTACTTCCTCCCAAAGAAAAAGTTAATATTTATGGTGACGGAAATGTAAAAGTTGTGT 600
Query 637 TTGCGGATGAAGATGATATCGCAAAATACACCGCGAAA-ACGTTAAACGATCCACGGACA 695
| |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||
Sbjct 601 TCGCGGATGAAGATGATATCGCAAAATACACCGC-AAAGACGTTAAACGATCCGCGGACA 659
Query 696 TTAAACAAAACCGTGAATATTAGACCTCCCGACAACGTTCTCACGCAGTTGGAATTAGTT 755
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||
Sbjct 660 TTAAACAAAACCGTGAATATAAGACCTCCCGACAACGTTCTCACTCAGATGGAATTAGTT 719
Query 756 CAGATCTGGGAAAAGCTAACCGGAAAAGAATTGGAGAAAACAAATATTGCTGCACAAGAC 815
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 CAGATGTGGGAAAAGCTAACCGGAAAAGAATTGGAGAAAACAAATATTGCTGCAGAAGAC 779
Query 816 TTCCTCGCCAACATTGAACAAATGGAGATTCCACACCAAGCAGGGATAGGACATTTCTAT 875
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 780 TTCCTTGCCAACATTGAACAAATGGAGATTCCACACCAAGCGGGGATAGGACATTTCTAT 839
Query 876 CACATTTTCTATGAAGGATGTCTCACTGATCACGAAGTCGGAGAAGACGAAGAAGCTTCT 935
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 840 CACATTTTCTACGAAGGATGTCTCACTGATCACGATGTCGGAGAAGACGAAGAAGCTTCT 899
Query 936 AGTCTTTATCCTGACGTCAAGTACAAACGCATGGATGATTACTTAAGAATGTTCCTCTGA 995
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 AGTCTTTATCCTGACGTCAAGTACAAACGCATGGATGATTACTTAAGAATGTTCCT-T-- 956
Query 996 TTTGACCAAGTCTTATCTATACTAAATACACATATCAAAAGTTTGATGTTTTATATTCAT 1055
| | || | | || | || | |||||||||||||||||||||||||
Sbjct 957 T---A--AA-T---A-CT---CG---TA----T--CAAAAGTTTGATGTTTTATATTCAT 994
Query 1056 -TCATGTTCTGCTATATATGCAAATTTAAAAATATATTCTTCATGCAAGAAAAAATATTA 1114
| ||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 995 AT-ATGTTCTGCTATA----CAAATTTAAAAATATATTCTTCATGTAATAAAAAATATTA 1049
Query 1115 TCTTTGGTT 1123
||||| |||
Sbjct 1050 TCTTTTGTT 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42087700368
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5