BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32120.1
Length=3790
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336289 jgi|Araly1|336289|fgenesh1_pg.C_scaffold_1002854 1247 0.0
> Ahg336289 jgi|Araly1|336289|fgenesh1_pg.C_scaffold_1002854
Length=795
Score = 1247 bits (675), Expect = 0.0
Identities = 758/798 (95%), Gaps = 6/798 (1%)
Strand=Plus/Plus
Query 2827 ATGGGTTCTTTCAAGGGTCATGCTTTGCCTGGTACATTGTT-CTTGGTAGTTGGAGTATG 2885
||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||
Sbjct 1 ATGGGTTCTTTCAAGGGTCATGCTTTGCCAGGTACATTGTTCCTT-GTGGTTGGAGTATG 59
Query 2886 GCACATTTGGAGCTCAGTTGTTAGATACATATCGAATCCTAGTTCATTTCGGGTTAGAGT 2945
|||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 60 GCACATTTGGAGCTCAGTGGTTCGATTCATATCGAATCCTAGTTCATTTCGGGTTCGAGT 119
Query 2946 TTGGCATCCTGTTCCTGGTTTCAATGATAGGATCAAGTACTTGGAGCTTTACGTTGTTAC 3005
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 120 TTGGCACCCTGTTCCTGGTTTTAATGATAGGATCAAGTACTTGGAGCTTTATGTTGTTAC 179
Query 3006 TATTGGCTCGTTCATTGACTTGTGCATTGAGTTCTTGTATTCAACTCATCTCAAGTTCTT 3065
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TATTGGCTCGTTCATTGACTTGTGCATTGAGTTTTTGTATTCAACTCATCTCAAGTTCTT 239
Query 3066 TGTTAATGGTGTTTTGAATCCTTCCCATATGAATGACTTTGAGCACTCTGGGATGCTTCT 3125
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 240 TGTTGATGGTGTTTTGAATCCTTCCCACATGAATGATTTTGAGCACTCTGGGATGCTTCT 299
Query 3126 CATGTTCTTCATCCTCGGATTTATCGCTTTGCTCTCCGAGAAAACAAGGTTACTTCCTCT 3185
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CATGTTCTTCATCCTCGGATTTATCGCTTTGCTCTCCGAGAAAACGAGGTTACTTCCTCT 359
Query 3186 GCCACAAGAAGCTCTGTGTC-TAATCGCTGCAACAGCTTTTACGGCAGAGTGTCTTCTCT 3244
||||||||||||||| || | |||| ||||||||||| ||||| || || ||||||||||
Sbjct 360 GCCACAAGAAGCTCTATG-CTTAATTGCTGCAACAGCCTTTACAGCTGAATGTCTTCTCT 418
Query 3245 TCTTCTT-CCACTCCACAAGCCACAAAGGTCTTGAAGGTTATTACCATCTCCTCCTCGTC 3303
|||| || |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCTT-TTCCCACCCCAAAAGCCACAAAGGTCTTGAAGGTTATTACCATCTCCTCCTCGTC 477
Query 3304 TTTCTCATCGGTCTCTGCGTCATCTCCTCAATCGCTGGAGCAATCTGCCCTACAAGCTTC 3363
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 478 TTTCTCATCGGTCTCTGCGTCATCTCCTCAATCGCAGGAGCAATCTGCCCTACAAGCTTC 537
Query 3364 CCAGTAGATCTATGCAATGGCATTGCAATGACTCTTCAAGGCCTCTGGTTTTATCAGACA 3423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 538 CCAGTAGATCTATGCAATGGCATTGCAATGACTCTTCAAGGCCTCTGGTTTTACCAGACA 597
Query 3424 GCTTTCACTCTGTATGGCCCTATGATGCCTCAAGGCTGCAGTTTAAAACAAAACTCTGTA 3483
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 598 GCTTTCACTCTCTATGGCCCTATGATGCCTCAAGGCTGTAGTTTAAAACAAAACTCTGTA 657
Query 3484 GTTTGCAGATCAGTTGATTCAGAAGTCTCAGGAGAGTTTCTGGCTAATTTTCAGCTCTTT 3543
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 658 GTTTGCAGATCAGTCGATTCCGAAGTCTCCGGAGAGTTTCTGGCTAATTTTCAGCTATTT 717
Query 3544 TCATTGGTTCTTGCTGTTCTTGTTTGCGTTGTGGGTTCATATGTTTTTGCAGCTTCAAGA 3603
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 718 TCATTGGTTCTTGCTGTTCTTGTCTGCGTTGTGGGTTCATATGTATTTGCAGCTTCGAGA 777
Query 3604 TTTGGAGTAAGTAGATGA 3621
|||||||| |||||||||
Sbjct 778 TTTGGAGTTAGTAGATGA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143210647199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5