BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32140.1
Length=1776
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273 1480 0.0
Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1 122 6e-27
Ahg327685 jgi|Araly1|327685|fgenesh1_pm.C_scaffold_6002905 78.7 1e-13
Ahg900496 jgi|Araly1|900496|Al_scaffold_0004_1146 63.9 4e-09
> Ahg913019 jgi|Araly1|913019|Al_scaffold_0001_3273
Length=1800
Score = 1480 bits (801), Expect = 0.0
Identities = 1061/1184 (90%), Gaps = 28/1184 (2%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTCCGACCTTTCACTTGATTTAGTCGAAGAGATATTGTGTAGGGTTCCG 60
||||||| ||||||||| ||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 1 ATGACGAAGATGTCCGATCTTTCACATGATTTGGTCGAAGAGATATTGTGTATGGTTCCG 60
Query 61 ATAACTTCTCTTAA-AGCAGTGAGATCTA-GTTGCAAACTATGGAACGTTCTT-TCCAAG 117
|||||||||| ||| |||||||||||| | | |||||||||||||||||| || |||||
Sbjct 61 ATAACTTCTC-TAAGAGCAGTGAGATCCACG-TGCAAACTATGGAACGTT-TTATCCAAA 117
Query 118 AACCGGATTTTATGTAAAACAGAAGCTAGAAATCAGTTTTTAGGGTTCACGATAATGAAT 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 118 AACCGGATTTTATGTAAAGCAGAAGCTAGAAATCAGTTTTTAGGGTTCACGATGATGAAT 177
Query 178 CATAGGCTTTATTCCATGAGATTCAATCTCCATGGAATCGGCCTCAATGAAAACAGTGAA 237
|||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 178 CATAGGCTTTATTCGATGAGATTCAATCTCCATGGAATCGGCCTCAACGAAGACGGTGAA 237
Query 238 GAGTTCATTGATCCATCTATAAAGCCAATAGGTAATTTACTTAATCAAGTCGAGATATCT 297
||||||| ||||||||| ||||||||||||||| || |||||||||| ||||||||||||
Sbjct 238 GAGTTCACTGATCCATCAATAAAGCCAATAGGTGATATACTTAATCAGGTCGAGATATCT 297
Query 298 AAAGTGTTTTATTGCGAAGGTTTATTGTTATGCGTCACAAGGAACCACTCAAGCAAGCTC 357
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAAGTCTTTTATTGCGAAGGTTTATTGTTATGCGTCACAAGGAACCACTCAAGCAAGCTC 357
Query 358 GTAGTTTGGAACCCGTATTTGGGAGAAATTCGTTGGATCAAAACTAGGAATGATTACCAC 417
|||||||||||||| ||||||||| ||| | | |||||| || |||| ||||||||||||
Sbjct 358 GTAGTTTGGAACCCCTATTTGGGACAAACTAGGTGGATCCAACCTAGCAATGATTACCAC 417
Query 418 ATAGGCGTTACATATGCTCTCGGGTACGACAACAACAAGAACCACATGATCTTGAGGttt 477
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 418 ATAGGCGTTACATACGCTCTAGGGTACGACAACAACAAGAACCACAAGATCTTGAGGTTT 477
Query 478 ttttCTGAACAAGGCTACTACGAGATTTACGACATGAACTCTTCTGACTCATGG-GATTG 536
||| ||| |||||||| |||||| |||||||| |||| ||| | || ||| | |||
Sbjct 478 TTTGCTGGACAAGGCTCCTACGAAATTTACGATTTGAAGTCTAAT---TCGTGGAGTTTG 534
Query 537 TTTTTATGGCATTCCCAACAAGGGGTTAAAA-TGTTATCAGCCCGGCGCGTCGTTAAATG 595
| || ||| |||||||| || |||||||||| | ||||||||||||| ||||||||||||
Sbjct 535 TCTT-ATGTCATTCCCATCAGGGGGTTAAAAAT-TTATCAGCCCGGCACGTCGTTAAATG 592
Query 596 GAAATGCTTATTTTTTGACTGAGGGAAGAGAAGTAATGGAAGGGTATGATTGCTTACTCG 655
|||||||||||||||||||||| | |||| |||| |||||||||| ||||||||||||||
Sbjct 593 GAAATGCTTATTTTTTGACTGATGCAAGAAAAGTTATGGAAGGGTGTGATTGCTTACTCG 652
Query 656 GTTTTGATTTTACAACAAAGAAATTTGGACCA-CTTCTTTCTTTGTCGTTTTCGCATGAT 714
||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||
Sbjct 653 GTTTTGATTTTACAACAGAGAAATTTGGGC-AGCTTCTTTCTTTGTCGTTTTCGCATGAT 711
Query 715 TTTATAGAGACTGGGAGACTATCTTGTGTTAAAGGAGAGAAACTTGCGGTC-TTATATCA 773
|||| |||||||||||||||||||||||||| ||||||||||| |||| | ||||||||
Sbjct 712 TTTACGGAGACTGGGAGACTATCTTGTGTTAATGGAGAGAAACTCGCGG-CATTATATCA 770
Query 774 GCGCTGCTATACCTATGAGATGGAGGTATGGGTGACAACTAAGATAGAGCCGAATGCGGT 833
|||| | | || | ||||| |||| ||||||||||||||||||| |||||||||| |||
Sbjct 771 CCGCTACGAGACATTTGAGACGGAGATATGGGTGACAACTAAGATTGAGCCGAATGAGGT 830
Query 834 GTCATGGAGCAAATTCTTAGCAGTTGAAATGGAACCACTCACTAGTCTAAAGTTTAACGA 893
||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||
Sbjct 831 GTCGTGGAGCAAATTCTTAGCAGTTGATATGGAACCATTCACTAGTCTTAAGTTTCACGA 890
Query 894 TGAT-TCTGGCAGTTTCTTCATTGACGAAGAGAAGAAAATCGTC-GTGGTTTTTGATATA 951
|||| | |||||||||||||||||| |||||||||||||||| | ||| |||| ||| ||
Sbjct 891 TGATGT-TGGCAGTTTCTTCATTGAAGAAGAGAAGAAAATCG-CAGTGCTTTTCGATTTA 948
Query 952 GACGAATCTGAACGCAACAATACGGCTTACATCATTGGAGATTATGGATGCTTGAAAGAA 1011
|| |||||||||||| |||||| | |||||||||||| ||| |||||||||||||||||
Sbjct 949 GATGAATCTGAACGCTACAATATAGTTTACATCATTGGTGATAATGGATGCTTGAAAGAA 1008
Query 1012 GTTGATCTTGATGAAGTTGTGAACCCACAAGAATCTGTGGAGGTCGGAGACCGCAT-TTA 1070
|| ||||||||||||||||||||||| ||||||||||| ||||||| | |||||| ||
Sbjct 1009 GTGGATCTTGATGAAGTTGTGAACCCCCAAGAATCTGTCGAGGTCG-A--CCGCATGTT- 1064
Query 1071 TTCTTTTTCACCATTTGTGTGCTCTTGCTCTTATGTTCCAAGTTTAGTGAAATTTAAAGA 1130
|| |||||| ||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 1065 TTATTTTTCGCCATTTGTGTGCTCTTGCTCTTATGTTCCAAGTGTAGTGAAAATCAACCA 1124
Query 1131 AGAT-GCAGAACATGAAAGGAAAGATAAGAAGAGGAAGAGTAAG 1173
| || |||||||||||||||||| |||||||||||||||| |||
Sbjct 1125 A-ATTGCAGAACATGAAAGGAAATATAAGAAGAGGAAGAGGAAG 1167
Score = 534 bits (289), Expect = 7e-151
Identities = 470/550 (85%), Gaps = 41/550 (7%)
Strand=Plus/Plus
Query 1194 TGGATATGATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCC 1253
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1266 TGGATATGATTTTATACTGTGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCC 1325
Query 1254 TCTGCCGTTTAAACATTCTTTTAGGGATACTTGGACTCTATCTTCTGTTAAAGAAGAGAA 1313
||||||||||||||| || ||| |||||||||||||| ||| |||||||||||
Sbjct 1326 TCTGCCGTTTAAACA-----TT----ATATTTGGACTCTATCTTGTGTCAAAGAAGAGAA 1376
Query 1314 ACTTGCAGTCGCAGTGTTATACTGGAAAAATACATGTGTGATGATAGAGATATGGATGAC 1373
||| |||||||| ||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct 1377 ACTCGCAGTCGCGGTGTTATGTTGGGAAAATACA--TATG-TGATAGAGATATGGATGAC 1433
Query 1374 AATTAAGATTGATCCTAATGTCGAGTCGTGGAGCAAATTCTTAAGAGTTGATAGGAAACC 1433
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1434 AATTAAGATTGATCCTAATGCCGCGTCGTGGAGCAAATTCTTAAGAGTTGATAGGAAACC 1493
Query 1434 ATGCATTGATCTTCGCTTTGA-T--G--A-TCGTAATGACAGTTTTTTCATTGACGAAGA 1487
| ||||| |||| |||||| | | | |||| |||||||||| ||||||||||||||
Sbjct 1494 ACCCATTGGTCTTGGCTTTGTGTTTGCTAATCGTGATGACAGTTTCTTCATTGACGAAGA 1553
Query 1488 GAAGAAAGTTGTCGTGTTTTTTAGTTCAGACAAAGTTAAAACCTCTACGGCTTACGTCAT 1547
||||||||| | |||| |||||||||||||| ||||| |||||||||| ||||| ||||
Sbjct 1554 GAAGAAAGTCGCCGTGGTTTTTAGTTCAGACGAAGTTGAAACCTCTACTGCTTATATCAT 1613
Query 1548 TGGAGATAATAGATATTTGAGAACAGTGGATCTTGAAAAAGCTGCAAACTCCCAAGAATC 1607
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1614 TAGAGATAATAAATATTTGAAAACAGTGGATCTTGAAAAAGCTGCAAACTTCCAAGAATC 1673
Query 1608 TGTGGAGGTCGGAGAACGCGTGTATTGTTTTTCGCCGCTTGTGTGCTCTTGC---TCTTA 1664
| | | | | ||||||||| ||| ||||||||||| ||| |||||
Sbjct 1674 T-T-----T-G---------T--ATTGTTTTTTGCCACTTGTGTGCTCCTGCAGCTCTTA 1715
Query 1665 TTATGTTCCAAGTTTGGTGAAAATCAACCACAAT-GCAGGACGCAAAAGGAAAGAGAAGA 1723
||||||||||||||||||| |||||||||| ||| ||||||| |||||| ||||| ||||
Sbjct 1716 TTATGTTCCAAGTTTGGTGCAAATCAACCA-AATTGCAGGACACAAAAGTAAAGATAAGA 1774
Query 1724 AGACGAAGCG 1733
||| ||||||
Sbjct 1775 AGAGGAAGCG 1784
Score = 119 bits (64), Expect = 8e-26
Identities = 319/433 (74%), Gaps = 53/433 (12%)
Strand=Plus/Plus
Query 640 TATGATTGCT-TACTCG-GTTTTGATTTTACAACAAAGAAATTTGGACCA-CTTCTTTCT 696
||||||| | |||| | ||||||||||||||||| ||| ||||||| || ||||| ||
Sbjct 1270 TATGATT-TTATACT-GTGTTTTGATTTTACAACAGAGAGATTTGGA-CAGATTCTTCCT 1326
Query 697 TTGTCGTTTTCGCATGATTTTATAGAGACTGGGAGACTATCTTGTGTTAAAGGAGAGAAA 756
|| ||||| ||| || || | | |||| ||||||||||| |||| |||||||
Sbjct 1327 CTGCCGTTTAAACATTATATT-T-G-GACT------CTATCTTGTGTCAAAGAAGAGAAA 1377
Query 757 CT-----T-GCGGTCTTATATCAGCGCTG-CTATACCTATGAGATGGAGGTATGGGTGAC 809
|| | ||||| |||| | | | | |||| |||| ||| ||| ||||| ||||
Sbjct 1378 CTCGCAGTCGCGGTGTTATGT-TG-G--GAAAATACATATGTGATAGAGATATGGATGAC 1433
Query 810 AACTAAGATAGAGCCGAATGCGGTGTCATGGAGCAAATTCTT-AGCAGTTGAAATGG-AA 867
|| |||||| || || ||||| | ||| |||||||||||||| || |||||| | || ||
Sbjct 1434 AATTAAGATTGATCCTAATGCCGCGTCGTGGAGCAAATTCTTAAG-AGTTGATA-GGAAA 1491
Query 868 CCACTCACTAGTCTAAAG-TTTAACG-ATG--ATTC-TG--G-CAGTTTCTTCATTGACG 919
|||| || | |||| | ||| | || | || || | |||||||||||||||||
Sbjct 1492 CCACCCATTGGTCT-TGGCTTT-GTGTTTGCTAATCGTGATGACAGTTTCTTCATTGACG 1549
Query 920 AAGAGAAGAAAATCGTCGTGGTTTTT-GATATAGACGAA-TCTGAA-CGCAACAATACGG 976
||||||||||| ||| |||||||||| | | ||||||| | |||| | | | ||| |
Sbjct 1550 AAGAGAAGAAAGTCGCCGTGGTTTTTAGTTC-AGACGAAGT-TGAAAC-CT-C--TACTG 1603
Query 977 CTTACATCATTGGAGATTATGGATGCTTGAAAGA-AGTTGATCTTGATGAAGTTGTGAAC 1035
|||| |||||| ||||| || || |||||| | ||| |||||||| ||| || |||
Sbjct 1604 CTTATATCATTAGAGATAATAAATATTTGAAA-ACAGTGGATCTTGAAAAAGCTGCAAAC 1662
Query 1036 C-CACAAGAATCT 1047
| |||||||||
Sbjct 1663 TTC-CAAGAATCT 1674
> Ahg472870 jgi|Araly1|472870|fgenesh2_kg.1__2824__AT1G25141.1
Length=3192
Score = 122 bits (66), Expect = 6e-27
Identities = 175/225 (78%), Gaps = 18/225 (8%)
Strand=Plus/Plus
Query 235 GAAGAGTTCATTGATCCATCTATAAAGCCAATAGGTA-ATTTACTTAATCAAGTCGAGAT 293
||||| || ||||||| |||||||||| | ||||| |||| |||||||||||||||||
Sbjct 2179 GAAGACTTGATTGATCTATCTATAAAG-C---AGGTAGATTTGCTTAATCAAGTCGAGAT 2234
Query 294 ATCTAAAGTGTTTTATTGCGAAGGTTTATTGTTATGCGTCAC-AAGGAACCACTCAAGCA 352
||||||||||| | | ||||| || || ||||||||||| | ||||| | |||| ||
Sbjct 2235 ATCTAAAGTGTATCACTGCGACGGCTTGTTGTTATGCGTGGCTAAGGA-CAACTCGAGG- 2292
Query 353 AGCTCGTAGTTTGGAACCCGTATTTGGGAG-AAATTCGTTGGATCAAAACTAGGA-ATGA 410
| |||| ||||||||||| |||||||| | ||| | ||||||| | | || | | ||
Sbjct 2293 -G-TCGTGGTTTGGAACCCTTATTTGGG-GCAAACAAGATGGATCAGACCCAGAACA-GA 2348
Query 411 TTACCA-CATAGGCGTTA-CATATGCTCTCGGGTACGACAACAAC 453
| ||| |||||| | | | |||||||| || ||||||| ||||
Sbjct 2349 AT-CCAACATAGGAGACAGC-TATGCTCTTGGATACGACATCAAC 2391
> Ahg327685 jgi|Araly1|327685|fgenesh1_pm.C_scaffold_6002905
Length=1017
Score = 78.7 bits (42), Expect = 1e-13
Identities = 98/124 (79%), Gaps = 8/124 (6%)
Strand=Plus/Plus
Query 1200 TGATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCCTCTGCC 1259
|||||| |||| | ||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct 534 TGATTTCCTACTCTCTTTTGATTTTACAACCGAGAGATTTGGACCGCTTCTGCCTCTGCC 593
Query 1260 GTTTAAACA-TT-CTTTTAGG-GATACT-TGGACTCTATCTTCTGTTAAAGAAGAGAAAC 1315
||| || || |||| || |||||| | ||||| ||| ||||| |||| || | |
Sbjct 594 -TTTCCACGCTTTCTTT--GGAGATACTGTC-ACTCTTTCTAGTGTTAGAGAAAAGCAGC 649
Query 1316 TTGC 1319
||||
Sbjct 650 TTGC 653
> Ahg900496 jgi|Araly1|900496|Al_scaffold_0004_1146
Length=1275
Score = 63.9 bits (34), Expect = 4e-09
Identities = 53/62 (85%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 1202 ATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCCTCTGCCGT 1261
||||| |||| | |||||||||||||||||||||||||||| | ||| |||||||| |
Sbjct 770 ATTTTCTACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-T 828
Query 1262 TT 1263
||
Sbjct 829 TT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66657928750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5