BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32160.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473397 jgi|Araly1|473397|fgenesh2_kg.1__3351__AT1G32160.1 2113 0.0
> Ahg473397 jgi|Araly1|473397|fgenesh2_kg.1__3351__AT1G32160.1
Length=1408
Score = 2113 bits (1144), Expect = 0.0
Identities = 1328/1414 (94%), Gaps = 24/1414 (2%)
Strand=Plus/Plus
Query 8 TTTTCGAAATATC-AAA-AG-AAGG---AACAAAAATGCAAGCCATCGGTAGCAGCCATG 61
||||||||||||| ||| || |||| || |||||||||||||||||| ||||||||||
Sbjct 1 TTTTCGAAATATCAAAAGAGAAAGGAAAAAAAAAAATGCAAGCCATCGGCAGCAGCCATG 60
Query 62 GCAGGAGGCTCTGCTTCAACCACTAtctctccgattccttctccaaattcctctctcctt 121
| |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 61 GGAGGAGGCTGTGCTTCAACCATTATCTCTCCGATTCCTTCTCCAAGTTCCTCTCTCCTT 120
Query 122 cttcttctccttcccttctccctcAGAGATGCCATTCGTTCTGTATCCCCAAGCTTGGAA 181
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTTCTTCTCCTTCCCTTCTCCCTCAGAGATGCCATTCGTTTTGTATCCCCAAGCTTGGAA 180
Query 182 GTAGTAGTACCAATGAGAATGGCAGAGGAAGAAGTGTAACAGTGAGAGCTTCAGGAGATG 241
||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 181 GTAGTAGTATCAATGAGAATGGCAGAGGAAGAATTGTGACAGTGAGAGCTTCAGGAGAAG 240
Query 242 AAGATTCTAATGAG-AACTTTGCTCCTCTTGCTCCTGTTGAGCTTGAATCTCCTGTAGGA 300
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGATTCTAATG-GCAACTTTGCTCCTCTTGCTCCTGTTGAGCTTGAATCTCCTGTAGGA 299
Query 301 CAGCTTTTGGAGCAGATTCTTAGAACTCATCCTCATCTT-TTACCCGTTACTGTCGATGA 359
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 300 CAGCTTTTGGAGCAGATTCTTAGAACTCATCCTCAT-TTGTTACCCGTTACTGTCGATGA 358
Query 360 GCAGCTCGAGAAATTCGCCGCGGAAAGCGAGTCTCGTAAAGCTGATTCGTCTTCCACACA 419
||||||| ||||||||||||| |||| |||| ||| |||||| ||||||||| | |||||
Sbjct 359 GCAGCTCCAGAAATTCGCCGCAGAAAACGAGGCTCTTAAAGCCGATTCGTCTGCAACACA 418
Query 420 AGACATTCTCCAAAAGAGGATATCTGAAGTTAGAGATAAGGAAAGACGTAAAACTTTAGC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AGACATTCTCCAAAAGAGGATATCTGAAGTTAGAGATAAGGAAAGACGTAAAACTTTAGC 478
Query 480 AGAGATCATTTACTGTTTAGTGGTACACAGATTTGTGGAAAAAGGAATCTCTATGATTCC 539
|||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 479 GGAGATCATTTACTGTTTAGTGGTACAAAGGTTTGTGGAGAAAGGAATCTCTATGATTCC 538
Query 540 TCGGATTAAACCAACTTCAGACCCAGCAGGACGGATAGACTTATGGCCGAATCAAGAAGA 599
|| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 539 TCAGATTAAACCAACTTCAGACCCAGCGGGACGGATAGACTTATGGCCGAACCAAGAAGA 598
Query 600 GAAGCTCGAAGTCATTCACTCTGCGGATGCGTTCGAGATGATACAGAGTCACTTGTCTTC 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 GAAGCTCGAAGTCATTCACTCTGCGGATGCTTTCGAGATGATACAGAGTCACTTGTCTTC 658
Query 660 AGTTCTTGGAGACGGACCAGCAGTTGGTCCGTTAAGCTCTATAGTTCAGATAGGCAAAAT 719
||||||||||||| || |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 659 AGTTCTTGGAGACCGAACAGCGGTTGGTCCTTTAAGCTCTATAGTTCAGATAGGCAAAAT 718
Query 720 CAAGCTAGGAAAACTCTATGCTGCTTCTGCTATGTATGGATATTTTCTCAGAAGAGTAGA 779
||| || ||||||||||| |||||||| || |||||||| |||||||| |||||||||||
Sbjct 719 CAAACTCGGAAAACTCTACGCTGCTTCAGCCATGTATGGCTATTTTCTTAGAAGAGTAGA 778
Query 780 CCAAAGATACCAACTTGAGAGAACCATGAACACACTTCCGAAACGCCCTGAGAAAACCAG 839
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 779 CCAAAGATACCAACTTGAGAGAACCATGAACACACTTCCGAAACGGCCTGAGCAAACCAG 838
Query 840 AGAACGGTTCGAAGAACCTTCGCCTCCTTACCCGTTATGGGACCCGGATTCCTTGATCAG 899
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 839 AGAACGATTCGAAGAACCTTCGCCTCCTTACCCGTTATGGGATCCAGATTCCTTGATCAG 898
Query 900 GATTCAACCAGAGGAATATGATCCCGATGAATACGCGATACAAAGAAATGAAGATGAGTC 959
||| |||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||
Sbjct 899 GATCCAACCAGAGGAATACGATCCTGATGAATACGGGATACAAAGAAATGAAGACGAGTC 958
Query 960 ATCGTCTTATGGATTGAGATCATATGTTACGTATTTGGACTCGGATACGCTTCAGAGATA 1019
|||||||||||||||||| ||||| ||||| || |||||||| ||||| |||||||||||
Sbjct 959 ATCGTCTTATGGATTGAGGTCATACGTTACATACTTGGACTCAGATACACTTCAGAGATA 1018
Query 1020 TGCCACGATACGTTCTAAAGAAGCCATGACTCTGATTGAGAAGCAGACTCAGGCGCTCTT 1079
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CGCCACGATACGTTCTAAAGAAGCCATGACTCTGATTGAGAAGCAGACTCAGGCGCTCTT 1078
Query 1080 TGGACGACCGGATATAAGGATACTCGAGGATGGAAAGCTCGATACTTCTAACGACGAGGT 1139
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1079 TGGACGACCGGACATAAGGATACTCGAGGACGGTAAGCTCGATACTTCTAACGACGAGGT 1138
Query 1140 TCTGTCTCTGAGTGTCTCTGGACTTGCGATGTTGGTTTTGGAAGCTGTGGCTTTTGGGTC 1199
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCTGTCTCTGAGTGTCTCAGGACTTGCGATGTTGGTTTTGGAAGCTGTGGCTTTTGGGTC 1198
Query 1200 TTTCTTATGGGATTCAGAGAGTTACGTTGAATCCAAATACCATTTCCTCAAGGCTTGAGT 1259
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1199 TTTCTTATGGGATTCAGAGAGCTACGTTGAATCCAAATACCATTTTCTCAAGGCTTGAGT 1258
Query 1260 TTAGTCCTCCTTGACATTTGTACCTTTTTGAGAGTAGTGAAT--GTAAATGTTAAATCTC 1317
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1259 TTAGTCCTCCTTGACATTTGTAC-TTTTTGAGAGTAGTGAATATGTAAATGTTAAATCTC 1317
Query 1318 TCAT---GTGAAATTGGTAGCAACTCCTAT-T-CGTAAAATGTAATAAACTT-CACTTCA 1371
|||| ||||||||||||||||||| ||| | |||||||||||||||| || |||||||
Sbjct 1318 TCATCATGTGAAATTGGTAGCAACTCATATATTCGTAAAATGTAATAAA-TTACACTTCA 1376
Query 1372 AAACTTTAGACTT-AAATCAAGCAT-ATTAGCTC 1403
|||||||||| || ||||||||||| || |||||
Sbjct 1377 AAACTTTAGA-TTCAAATCAAGCATTAT-AGCTC 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5