BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G32170.1
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473398 jgi|Araly1|473398|fgenesh2_kg.1__3352__AT1G32170.1 1757 0.0
> Ahg473398 jgi|Araly1|473398|fgenesh2_kg.1__3352__AT1G32170.1
Length=1171
Score = 1757 bits (951), Expect = 0.0
Identities = 1072/1129 (95%), Gaps = 13/1129 (1%)
Strand=Plus/Plus
Query 76 AAACACAAATCATAAATC---TTTTTCTTC-TTCCGAGAAAGAATGTCTAAATCATCGTA 131
|||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||
Sbjct 43 AAACACAAATCATAAATCTTTTTTTTTTTCATTCCCAGAAAGAATGTCTAAATCATCGTA 102
Query 132 TAAT--CA-------CATCTTCATCTTGATCTTGTGTTTATGTTTGAGATCATCATCAGC 182
|||| || |||| |||||||||||||| |||| ||||||||||||||| |||
Sbjct 103 TAATAACATCTTTTTCATCATCATCTTGATCTTGGGTTTGGGTTTGAGATCATCATTAGC 162
Query 183 CTTCACGAATCTCAACACCTTAAGCTTTGAAGAATCACTTTCTCCTCTCTTTGGAGATGC 242
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 163 CTTCACGAATCTCAACAGCTTAAGCTTTGAAGAATCACTTTCTCCTCTCTTTGGCGATGC 222
Query 243 CAATCTCGTCCGTTCACCTGATGATCTCTCCGTTCGTCTTCTCCTCGATCGCTATACCGG 302
|||||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct 223 AAATCTCGTCCGTTCTCCTGATGATCTCTCTGTTCGTCTCCTCCTTGATCGATATACCGG 282
Query 303 TTCTGGTTTCATATCATCGAATATGTATCAACATGGATTTTACAGCTCCATGATTAAGCT 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 283 TTCTGGTTTCATATCATCGAATATGTATCAACATGGATTTTACAGCTCCATGATCAAGCT 342
Query 363 TCCCGCTGATTATACTGCCGGCGTCGTCGTCGCCTTTTATACATCAAACGGAGACGTGTT 422
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 343 TCCCGCTGATTATACCGCCGGCGTCGTCGTCGCATTTTATACATCAAACGGGGACGTGTT 402
Query 423 CGAGAAAACACACGACGAGTTAGACATAGAGTTTCTAGGGAACATAAAAGGAAAGCCGTG 482
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 403 CGAGAAAACACACGACGAATTAGACATAGAGTTTCTAGGGAACATAAAAGGAAAGCCATG 462
Query 483 GAGGTTTCAGACAAATCTATACGGAAATGGAAGTACACATAGAGGTCGTGAAGAGAGATA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GAGGTTTCAGACAAATCTATACGGAAATGGAAGTACACATAGAGGTCGTGAAGAGAGATA 522
Query 543 TCGTCTCTGGTTTGATCCTTCTAAGGAGTTTCATCGTTATAGCATTCTCTGGACTCCTCA 602
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 523 TCGTCTCTGGTTCGATCCTTCTAAAGAGTTTCATCGTTATAGCATTCTCTGGACTCCTCA 582
Query 603 CAAGATCATATTTTGGGTAGATGATGTGCCAATAAGAGAAGTGATCAGAAACGATGCAAT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 CAAGATCATATTTTGGGTAGATGATGTGCCAATAAGAGAAGTGATCAGAAACGATGCAAT 642
Query 663 GGGAGCAGATTATCCGGCAAAGCCAATGGCTCTTTACGCCACCATTTGGGACGCTTCTGA 722
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 643 GGGAGCAGATTATCCGGCGAAGCCAATGGCTCTTTACGCCACCATTTGGGATGCTTCCGA 702
Query 723 TTGGGCTACTTCCGGCGGCAAATACAAAGCTAATTACAAATTTGCCCCTTTCGTAGCTGA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 703 TTGGGCTACTTCCGGCGGCAAATACAAAGCTAATTACAAATTTGCCCCTTTCGTAGCCGA 762
Query 783 ATTCAAATCTTTCTCTCTAGACGGTTGCTCCGTTGATCCTATTCAAGAAGTCCCCATGGA 842
|||||||||||||||||| ||||| ||||||||||||||||| |||||||| ||| ||||
Sbjct 763 ATTCAAATCTTTCTCTCTTGACGGCTGCTCCGTTGATCCTATCCAAGAAGTTCCCGTGGA 822
Query 843 TTGTTCCGACTCAGTCGATTTCCTTGAGTCTCAAGATTACTCTTCCATTAATTCCCATCA 902
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 823 TTGTTCCGACTCAGTCGATTTCCTTGAGTCTCAAGATTACTCTTCCATTAATGCCCATCA 882
Query 903 ACGCGCCGCCATGCGAAGATTTCGACAACGTTTCATGTACTATTCTTACTGTTACGATAC 962
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 ACGAGCTGCCATGCGAAGATTTCGACAACGTTTCATGTACTATTCTTACTGTTACGATAC 942
Query 963 ACTTAGGTATCCTGAGCCTCTACCGGAATGTGTGATTGTTCCGGCTGAGAAAGATAGGTT 1022
||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||||||
Sbjct 943 ACTTAGGTATCCTGAGCCTCTGCCAGAGTGTGTCATTGTTCCGGCCGAGAAAGATAGGTT 1002
Query 1023 TAAGGAAACGGGAAGGTTGAAGTTTGGTGGTACGGAGGCGCGTGAACGGCGGAGAAATCG 1082
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TAAGGAAACGGGAAGGTTGAAATTTGGTGGTACGGAGGCGCGTGAACGGCGGAGAAATCG 1062
Query 1083 CCGGCAGCAACGTCGGCCTGAGATTGAGATTGAGAGTGATCCTGACGACAGAAAACTTTT 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ACGGCAGCAACGTCGGCCTGAGATTGAGATTGAGAGTGATCCTGACGACAGAAAACTTTT 1122
Query 1143 ATAAGATTTGTTTGTGCCATTCTTTTTACTTAAAATTCGTTTGTGAGTa 1191
||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1123 ATAAGATTTGTTTGTGCCATTTTTTTTACTTAAGATTCGTTTGTGAGTA 1171
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5